View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5501-Insertion-6 (Length: 344)
Name: NF5501-Insertion-6
Description: NF5501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5501-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 13477308 - 13477133
Alignment:
| Q |
8 |
acttttactttccattccatcatcaaagcctctaacaaaaacctcacacgtgtgatattcttttatatcctttaaataacatcattaactatttagcttt |
107 |
Q |
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| T |
13477308 |
acttttactttccattccatcatcaaagcctctaacaaaaacctcacacgtgtgatattcttttatattctt-aaataacatcattaactatttagcttt |
13477210 |
T |
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| Q |
108 |
tgttgattgcacttaagttatacgactaaatatattttaagaaaatatatggattcaatttgcaactgcaaacacgt |
184 |
Q |
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| T |
13477209 |
tgttgattgcacttaattgatatgactaaatatattttaagaaaatatatggattgaatttgtaactgcaaacacgt |
13477133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 198 - 344
Target Start/End: Complemental strand, 13476612 - 13476470
Alignment:
| Q |
198 |
accttaaatatactatgcattgttcataccaaccgaattaaactcgaagctcaactagcaaaccgtttatatttgaaatatttgaatgtgtaacataagt |
297 |
Q |
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| T |
13476612 |
accttaaatatactatgcattgtccataccagctgagttatactcgaaactca----gcaaaccgtttatatttgaaatatttgaatgtgtaacctaagt |
13476517 |
T |
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| Q |
298 |
cattcataataaatgtgggaatggcccacccaaatcaagatcacata |
344 |
Q |
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| T |
13476516 |
caatcatagtaaatgtgggcatggcccacccaaatcaagatcacata |
13476470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 685010 - 685050
Alignment:
| Q |
199 |
ccttaaatatactatgcattgttcataccaaccgaattaaa |
239 |
Q |
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| T |
685010 |
ccttacatataatatgcattgttcataccaactgaattaaa |
685050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 50380851 - 50380891
Alignment:
| Q |
198 |
accttaaatatactatgcattgttcataccaaccgaattaa |
238 |
Q |
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| T |
50380851 |
accttacatatattatgcattgttcataccaactgaattaa |
50380891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 32957558 - 32957602
Alignment:
| Q |
198 |
accttaaatatactatgcattgttcataccaaccgaattaaactc |
242 |
Q |
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| T |
32957558 |
accttacatatattatgcattgttcataccaaccgagctaaactc |
32957602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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