View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5501-Insertion-8 (Length: 340)
Name: NF5501-Insertion-8
Description: NF5501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5501-Insertion-8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 340
Target Start/End: Complemental strand, 34393692 - 34393376
Alignment:
| Q |
8 |
caacatacatctaaaagcaagtatttgtatttctgctaattaaatcatttattatagcgtacttgtacgttttaagcaaatttaagaataaattagacat |
107 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34393692 |
caacatacatctaaaagcaagtatatgtatttctgctaattaaatcatttattgtagtgtacttgtgcgttttaagcaaatttaagaataaattagacat |
34393593 |
T |
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| Q |
108 |
ttgagatgtataatcttatagatagaattatgttgcatgtgtacttggacgtttttaagctaatttcttgtaatctctttgtatcaactttatcacagtt |
207 |
Q |
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| T |
34393592 |
ttgagctgtataatcttatagatagaattatgttgcatgtgtacttgtacgtttttaagctaattttctgtaatctctttgtatcaactttatcacagtt |
34393493 |
T |
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| Q |
208 |
gatttgttagctgctctctcccccaaatgctctctccctcaaagtatatcatattttgaccaatctggatnnnnnnnnttggtgtgttagtgtccttatt |
307 |
Q |
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| T |
34393492 |
gatttgtgagctgctctc----------------tccctcaaagtatatcatattttgaccaatctggataaaaaaaattggtgtgttagtgtccttatt |
34393409 |
T |
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| Q |
308 |
atcttctttcttatctttgttgctttgaatgtg |
340 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34393408 |
atcttctttcttatctttgttgctttgaatgtg |
34393376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 28770761 - 28770794
Alignment:
| Q |
160 |
ttttaagctaatttcttgtaatctctttgtatca |
193 |
Q |
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| T |
28770761 |
ttttaagctaatttcttgtaatatctttgtatca |
28770794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 21711332 - 21711261
Alignment:
| Q |
160 |
ttttaagctaatttcttgtaatctctttgtatcaactttatcacagttgatttgttagctgctctctccccca |
232 |
Q |
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| T |
21711332 |
ttttaagctaatttcttgtaa-ctctttgtaacactttcatcatagtggatttgagagctgctctctccccca |
21711261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 8370464 - 8370535
Alignment:
| Q |
160 |
ttttaagctaatttcttgtaatctctttgtatcaactttatcacagttgatttgttagctgctctctccccca |
232 |
Q |
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| T |
8370464 |
ttttaagctaatttcttgtaa-ctctttgtaacactttcatcatagtggattggagagctgctctctccccca |
8370535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 193
Target Start/End: Complemental strand, 37781974 - 37781939
Alignment:
| Q |
158 |
gtttttaagctaatttcttgtaatctctttgtatca |
193 |
Q |
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| T |
37781974 |
gtttttaagctaatttcttgtaacctctttgtatca |
37781939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 32736983 - 32737033
Alignment:
| Q |
160 |
ttttaagctaatttcttgtaatctctttgtatcaactttatcacagttgat |
210 |
Q |
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|||||||||||||| |||||| |||||||||||| ||| |||| ||||||| |
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| T |
32736983 |
ttttaagctaattttttgtaacctctttgtatcaccttcatcatagttgat |
32737033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 761161 - 761129
Alignment:
| Q |
305 |
attatcttctttcttatctttgttgctttgaat |
337 |
Q |
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| T |
761161 |
attattttctttcttatctttgttgctttgaat |
761129 |
T |
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