View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5501_high_2 (Length: 429)

Name: NF5501_high_2
Description: NF5501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5501_high_2
NF5501_high_2
[»] chr5 (17 HSPs)
chr5 (19-419)||(1033278-1033678)
chr5 (19-402)||(1043687-1044065)
chr5 (19-100)||(1071326-1071407)
chr5 (244-348)||(1071086-1071190)
chr5 (244-339)||(1065356-1065451)
chr5 (19-101)||(1065598-1065680)
chr5 (25-102)||(1053240-1053317)
chr5 (244-337)||(1052958-1053051)
chr5 (244-337)||(1046298-1046391)
chr5 (19-101)||(1640878-1640960)
chr5 (244-337)||(1058294-1058387)
chr5 (21-102)||(1058505-1058586)
chr5 (40-120)||(1041528-1041607)
chr5 (19-90)||(1046577-1046648)
chr5 (345-412)||(1049941-1050008)
chr5 (358-419)||(1070997-1071058)
chr5 (358-410)||(1065267-1065319)
[»] chr3 (2 HSPs)
chr3 (19-171)||(44171369-44171521)
chr3 (19-171)||(44191665-44191817)


Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 1033678 - 1033278
Alignment:
Q  19 cattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaatttcaacaccatcaaaacctgcaatttgcatcacattgagcatgtt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1033678 cattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaagttcaacaccatcaaaacctgcaatttgcatcacattgagcatgtt 1033579  T
Q  119 agttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcctgtttctgaaaaatatcaatattgtactatgattgaatcacatttcgtttgg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1033578 agttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcctgtttctgaaaaatatcaatattgtactatgattgaatcacatttcgtttgg 1033479  T
Q  219 gataaatttgtacagatccacaaacttaccagcttcaatagcatttcttgcggcgagtctgaagtcatttacaatattaggaatttcatctgtccttagc 318  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1033478 aataaatttgtacagatccacaaacttaccagcttcaatagcatttcttgcagcgagtctgaagtcatttacaatattaggaatttcatctgtccttagc 1033379  T
Q  319 cttctcggtggtgagaatttttcaaaatcattgcttgtcagtgacttgtctgtagaagatatcggttcttgtccattcggctgaaaacctgttgagaata 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1033378 cttctcggtggtgagaatttttcaaaatcattgcttgtcagtgacttgtctgtagaagatatcggttcttgtccattcggttgaaaacctgttgagaata 1033279  T
Q  419 a 419  Q
    |    
T  1033278 a 1033278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 1044065 - 1043687
Alignment:
Q  19 cattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaatttcaacaccatcaaaacctgcaatttgcatcacattgagcatgtt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||| ||||||||  |||||    
T  1044065 cattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaaccttcaatttgcaccacattgattatgtt 1043966  T
Q  119 agttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcctgtttctg-aaaaatatcaatattgtactatgattgaatcacatttc--gtt 215  Q
    ||  |||||  |||||||||   ||  |||||||||||||||||||| |||||||| |||||||||||||||||||||||       ||  ||||   ||    
T  1043965 aggagatttgaaaaatgtcc--ttgtgctttaaagcaacaaatagtcatgtttctgaaaaaatatcaatattgtactatg------gcatttttcaattt 1043874  T
Q  216 tgggataaatttgtacagatccacaaacttaccagcttcaatagcatttcttgcggcgagtctgaagtcatttacaatattaggaatttcatctgtcctt 315  Q
    | |   ||||||||| | | |   |||||||||||||||||||||||||||||| || |||||||| ||||| ||||||| ||||||||||||||| |||    
T  1043873 tagacaaaatttgtaaaaacctgtaaacttaccagcttcaatagcatttcttgcagcaagtctgaaatcattgacaatatgaggaatttcatctgtgctt 1043774  T
Q  316 agccttctcggtggtgagaatttttcaaaatcattgcttgtcagtgacttgtctgtagaagatatcggttcttgtccattcggctga 402  Q
    |||| |||||||   | ||||| ||  | |||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||||    
T  1043773 agccgtctcggtttcgtgaattgttgtacatcattgcttgtgagtgacttgtccgtagaagatatcggtgcttgtccatttggctga 1043687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 1071407 - 1071326
Alignment:
Q  19 cattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaatttcaacaccatcaaaacctgcaatttg 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||||||    
T  1071407 cattcactttatctttcatgaattgttcaaggaggtagccatgagctccatggatttcaaccccatcaaatcctgcaatttg 1071326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 1071190 - 1071086
Alignment:
Q  244 ttaccagcttcaatagcatttcttgcggcgagtctgaagtcatttacaatattaggaatttcatctgtccttagccttctcggtggtgagaatttttcaa 343  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||  || ||||||| ||||||| |||    
T  1071190 ttaccagcttcaatagcatttcttgcagcgagtctgaagtcattgacaatgtttggaatttcatctgtccttagccgccttggtggtgtgaattttgcaa 1071091  T
Q  344 aatca 348  Q
     ||||    
T  1071090 catca 1071086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 244 - 339
Target Start/End: Complemental strand, 1065451 - 1065356
Alignment:
Q  244 ttaccagcttcaatagcatttcttgcggcgagtctgaagtcatttacaatattaggaatttcatctgtccttagccttctcggtggtgagaatttt 339  Q
    |||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||| ||| || |||| |||||||    
T  1065451 ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaatgttaggaatttcatctgtccttagccgtctaggcggtgtgaatttt 1065356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 1065680 - 1065598
Alignment:
Q  19 cattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaatttcaacaccatcaaaacctgcaatttgc 101  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||    
T  1065680 cattcactttatctttcatgaattgctcaaggaggtagccatgagctccatggatttcaaccccatcaaatcctgcaatttgc 1065598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 1053317 - 1053240
Alignment:
Q  25 ctttatctttcatgaattgttcaagtaggtagccatgagctccatgaatttcaacaccatcaaaacctgcaatttgca 102  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |||||||||    
T  1053317 ctttatctttcatgaattgttcaactaggtagccatgagctccatggatttcaaccccatcaaaacctacaatttgca 1053240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 337
Target Start/End: Complemental strand, 1053051 - 1052958
Alignment:
Q  244 ttaccagcttcaatagcatttcttgcggcgagtctgaagtcatttacaatattaggaatttcatctgtccttagccttctcggtggtgagaatt 337  Q
    |||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||| |||||||| |||||| ||| |||||    
T  1053051 ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgttcttagcctcctcggttgtgtgaatt 1052958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 244 - 337
Target Start/End: Complemental strand, 1046391 - 1046298
Alignment:
Q  244 ttaccagcttcaatagcatttcttgcggcgagtctgaagtcatttacaatattaggaatttcatctgtccttagccttctcggtggtgagaatt 337  Q
    |||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||  |||||||| || ||||||| |||||    
T  1046391 ttaccagcttcaatagcatttcttgcagcaagtctaaagtcattgacaatattaggaatttcttctgatcttagcctccttggtggtgtgaatt 1046298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 1640878 - 1640960
Alignment:
Q  19 cattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaatttcaacaccatcaaaacctgcaatttgc 101  Q
    ||||||||||||||||||| ||||| ||||||||||| || ||||| ||||| || ||||| |||||||||||||||||||||    
T  1640878 cattcactttatctttcataaattgctcaagtaggtaaccgtgagccccatggatctcaactccatcaaaacctgcaatttgc 1640960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 337
Target Start/End: Complemental strand, 1058387 - 1058294
Alignment:
Q  244 ttaccagcttcaatagcatttcttgcggcgagtctgaagtcatttacaatattaggaatttcatctgtccttagccttctcggtggtgagaatt 337  Q
    |||||||||||||||||||||||||| || |||||||||||||| ||||  || |||||||||||| ||||||||| ||| || |||| |||||    
T  1058387 ttaccagcttcaatagcatttcttgcagcaagtctgaagtcattgacaaggtttggaatttcatctatccttagccgtctgggcggtgtgaatt 1058294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 1058586 - 1058505
Alignment:
Q  21 ttcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaatttcaacaccatcaaaacctgcaatttgca 102  Q
    ||||||| ||||||||||||||| ||||||| |||||||| ||| ||||| |||||||| |||||||| |||||||||||||    
T  1058586 ttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaatttgca 1058505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 1041607 - 1041528
Alignment:
Q  40 attgttcaagtaggtagccatgagctccatgaatttcaacaccatcaaaacctgcaatttgcatcacattgagcatgttag 120  Q
    |||| ||||||||||||||||||| | |||| |||||| | ||||||||||||| |||||||| |||||||||||||||||    
T  1041607 attgctcaagtaggtagccatgagttgcatggatttcatc-ccatcaaaacctgaaatttgcaccacattgagcatgttag 1041528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 1046648 - 1046577
Alignment:
Q  19 cattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaatttcaacaccatcaaaac 90  Q
    ||||||||||||||||||||||||| ||||||||||| |||  ||| ||| |||||||||| ||||||||||    
T  1046648 cattcactttatctttcatgaattgctcaagtaggtatccagtagccccacgaatttcaaccccatcaaaac 1046577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 345 - 412
Target Start/End: Complemental strand, 1050008 - 1049941
Alignment:
Q  345 atcattgcttgtcagtgacttgtctgtagaagatatcggttcttgtccattcggctgaaaacctgttg 412  Q
    ||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||| || ||||||    
T  1050008 atcatcgcttgtgagtgacttgtttgtagaagatatcggtgcttgtccattcggctgataaactgttg 1049941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 419
Target Start/End: Complemental strand, 1071058 - 1070997
Alignment:
Q  358 agtgacttgtctgtagaagatatcggttcttgtccattcggctgaaaacctgttgagaataa 419  Q
    |||| |||||||||||||||||| ||| |||| ||||| |||||| || |||||||||||||    
T  1071058 agtggcttgtctgtagaagatattggtgcttgcccatttggctgataaactgttgagaataa 1070997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 410
Target Start/End: Complemental strand, 1065319 - 1065267
Alignment:
Q  358 agtgacttgtctgtagaagatatcggttcttgtccattcggctgaaaacctgt 410  Q
    ||||||||||||||||| ||||| ||| | |||||||| ||||||||| ||||    
T  1065319 agtgacttgtctgtagatgatattggtgcctgtccatttggctgaaaaactgt 1065267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 44171369 - 44171521
Alignment:
Q  19 cattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaatttcaacaccatcaaaacctgcaatttgcatcacattgagcatgtt 118  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44171369 cattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaacctgcaatttgcatcacattgagcatgtt 44171468  T
Q  119 agttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcctgttt 171  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44171469 acttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcatgttt 44171521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 44191665 - 44191817
Alignment:
Q  19 cattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaatttcaacaccatcaaaacctgcaatttgcatcacattgagcatgtt 118  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44191665 cattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaacctgcaatttgcatcacattgagcatgtt 44191764  T
Q  119 agttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcctgttt 171  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44191765 acttgattttcaaaatgtcccactgccctttaaagcaacaaatagtcatgttt 44191817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University