View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5501_low_1 (Length: 490)
Name: NF5501_low_1
Description: NF5501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5501_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 262 - 482
Target Start/End: Complemental strand, 18134763 - 18134543
Alignment:
| Q |
262 |
gatcacttaccaacaacaatcaacgaccagttggagtattaagagacatgatcatgttatttccaccgggaagataagtaacattaggcgatttcgctaa |
361 |
Q |
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| T |
18134763 |
gatcacttaccaacaacaatcaacgaccagttggagtattaagagacatgatcatgttatttccaccaggaagataagtaacattaggcgatttcgctaa |
18134664 |
T |
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| Q |
362 |
cgtccttgcaatttccctagcagcctcaatcatcctaagttcaatcaaccccttcccaaaagcagcagtagcatcagaaatcaacttagcagcctcactt |
461 |
Q |
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| T |
18134663 |
cgtccttgcaatttccctagcagcctcaatcatcctaagttcaatcaaccccttcccaaaagcagcagtagcatcagaaatcaacttagcagcctcactc |
18134564 |
T |
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| Q |
462 |
tcaccttcagccagaataatc |
482 |
Q |
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| T |
18134563 |
tcaccttcagcccgaataatc |
18134543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 57 - 208
Target Start/End: Complemental strand, 18134967 - 18134816
Alignment:
| Q |
57 |
ataaataaagagaatcaacactcatgcagattgtaatgtagcaattaacccgggttataaaaaaggtttgcaaccacaatatgaacagtaaccttaaggt |
156 |
Q |
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| T |
18134967 |
ataaataaagagaataaacactcatgcagattgtaatgtagcaataaacccgagttataaaaaaggtttgcagccacaatatgaacagtaaccttaaggt |
18134868 |
T |
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| Q |
157 |
ttttgttgatatatgtgcaatgtgactgcaatccacaactattgccacaatt |
208 |
Q |
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| T |
18134867 |
ttttgttgatatatgtgcaatgtgactgcaatccacaactattgccacaatt |
18134816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 18135022 - 18134981
Alignment:
| Q |
18 |
gaaattaatgtaaattattaaaccattaaatatccatctata |
59 |
Q |
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| T |
18135022 |
gaaattaatgcaaattattaaaccattaaatatccatctata |
18134981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 369 - 472
Target Start/End: Original strand, 1382102 - 1382205
Alignment:
| Q |
369 |
gcaatttccctagcagcctcaatcatcctaagttcaatcaaccccttcccaaaagcagcagtagcatcagaaatcaacttagcagcctcactttcacctt |
468 |
Q |
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||||||||||| | |||||||||| ||||||| ||||||| |||| | ||| | ||||||||||||||||||||| ||| ||||| |||||||| || | |
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| T |
1382102 |
gcaatttccctggaagcctcaatcctcctaagctcaatcagccccataccagcaacagcagtagcatcagaaatcagctttgcagcatcactttctccct |
1382201 |
T |
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| Q |
469 |
cagc |
472 |
Q |
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|||| |
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| T |
1382202 |
cagc |
1382205 |
T |
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