View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5501_low_4 (Length: 303)
Name: NF5501_low_4
Description: NF5501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5501_low_4 |
 | |
|
| [»] chr5 (6 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 1032876 - 1033164
Alignment:
| Q |
16 |
ttctgtcagatttggcatgtcggaagagtttctaattcaggtatgtatttatttcctcatataa-tttgaagattattttagttcgatgttgtttgttat |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1032876 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgtatttatttcctcatataaatttgaagattattttagttcgatgttgtttgttat |
1032975 |
T |
|
| Q |
115 |
tgttggatttagattgtgtgtcagcgtgcatgcagtcaaccacatcaagatcggctgtctagatttcaatgaaaattttgacttttttaaatctaaatta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1032976 |
tgttggatttagattgtgtgtcagcgtgcatgcagtcaaccacatcaagatcggctgtctagatttcaatgaaaattttgacttttttaaatctaaatta |
1033075 |
T |
|
| Q |
215 |
gtgagcttgaaatccagactgtccaatattgatcggacgtgtctgaataaatgcagtcacaactccttgattatacacaacccaaatct |
303 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1033076 |
gtgagcttgaaatccggactgtccaatattgatcggacgtgtctgaataaatgcagtcacaactccttgattatacacaacccaaatct |
1033164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 1052199 - 1052249
Alignment:
| Q |
16 |
ttctgtcagatttggcatgtcggaagagtttctaattcaggtatgtattta |
66 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
1052199 |
ttctgtcagatttggcatgttggaagagtttctaattctagtatgtattta |
1052249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 1043275 - 1043327
Alignment:
| Q |
7 |
ggtagattattctgtcagatttggcatgtcggaagagtttctaattcaggtat |
59 |
Q |
| |
|
|||| ||| |||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
1043275 |
ggtatatttttctgtcagatttggcatgttggaagagtttcaaattcaggtat |
1043327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 1049369 - 1049439
Alignment:
| Q |
7 |
ggtagattattctgtcagatttggcatgtcggaagagtttctaattcaggtatgtatttatttcctcatat |
77 |
Q |
| |
|
|||| ||| |||||||| |||||||||| ||||| ||||| ||||||||||||||| |||||| |||||| |
|
|
| T |
1049369 |
ggtatatttttctgtcaaatttggcatgctggaagggtttcaaattcaggtatgtatctatttcgtcatat |
1049439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Original strand, 1049579 - 1049641
Alignment:
| Q |
7 |
ggtagattattctgtcagatttggcatgtcggaagagtttctaattcaggtatgtatttattt |
69 |
Q |
| |
|
|||| ||| |||||||| ||||||||||| ||||||||||| ||||||| ||| ||||||||| |
|
|
| T |
1049579 |
ggtatatttttctgtcaaatttggcatgttggaagagtttcaaattcagctatttatttattt |
1049641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 1065046 - 1065088
Alignment:
| Q |
19 |
tgtcagatttggcatgtcggaagagtttctaattcaggtatgt |
61 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
1065046 |
tgtcagatttggcatgttggaagagtttctgattcaggtatgt |
1065088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University