View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5501_low_5 (Length: 296)
Name: NF5501_low_5
Description: NF5501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5501_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 5135004 - 5135133
Alignment:
| Q |
148 |
ctataagcagcttttaaccccaatcacgactatgacactgttagccaccactcagtacatagttgaagccagattgttcagcttttagcgtcgcctaatg |
247 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5135004 |
ctataagcagcttttaacccgaatcacgactatgacactgttagtcaccactcagtacatagttgaagccagattgttcagcttttagcgtcgcctaatg |
5135103 |
T |
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| Q |
248 |
caacttataatcacatttcagtatcaggat |
277 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5135104 |
caacttataatcacatttcagtatcaggat |
5135133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 148 - 277
Target Start/End: Original strand, 5099736 - 5099871
Alignment:
| Q |
148 |
ctataagcagcttttaaccccaatcacgactatgacactgttagccaccactcagtacatagttgaagccagattgttcagcttttagcgtcgcctaatg |
247 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5099736 |
ctataagcagcttttaacccgaatcacgactatgacactgttagccaccactaagtacatagttgaagccagattattcagcttttagcgtcgcctaata |
5099835 |
T |
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| Q |
248 |
caacttata------atcacatttcagtatcaggat |
277 |
Q |
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||||||||| ||||||||||||||||||||| |
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| T |
5099836 |
caacttataatacgcatcacatttcagtatcaggat |
5099871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 5058132 - 5058036
Alignment:
| Q |
150 |
ataagcagcttttaaccccaatcacgactatgacactgttagccaccactcagtacatagttgaagccagattgttcagcttttagcgtcgcctaatg |
247 |
Q |
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|||||||||||| ||| ||| |||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
5058132 |
ataagcagcttt-aactccagtcacgattatgacactgttagccaccactaaatacatagttgaagccagattgttcagcttttatcgtcacctaatg |
5058036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 30975364 - 30975250
Alignment:
| Q |
37 |
ccttcgaaatttgatgtcactggttgcctgagatttaaagtaatgtttggcgattctattattcattttttctctgttttattctcattaatctcatttg |
136 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||| ||| | ||||| ||||||||||||||| || |||||| |||||||||||||||| |
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| T |
30975364 |
cctttgaaatttgatgtcactggttgccttagatttaaagtaatttttagttattctgttattcattttttctttgctttattttcattaatctcatttg |
30975265 |
T |
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| Q |
137 |
aatgataccaactat |
151 |
Q |
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||||||||||||||| |
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| T |
30975264 |
aatgataccaactat |
30975250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 19909626 - 19909688
Alignment:
| Q |
89 |
attctattattcattttttctctgttttattctcattaatctcatttgaatgataccaactat |
151 |
Q |
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||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
19909626 |
attctgttattcattttttctttgctttattctcattaatctcatttgaatgataccaactat |
19909688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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