View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5502-Insertion-1 (Length: 1104)

Name: NF5502-Insertion-1
Description: NF5502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5502-Insertion-1
NF5502-Insertion-1
[»] chr3 (20 HSPs)
chr3 (564-764)||(6821153-6821354)
chr3 (761-795)||(38999517-38999551)
chr3 (761-794)||(48910514-48910547)
chr3 (573-657)||(7129121-7129205)
chr3 (761-795)||(8176430-8176464)
chr3 (761-795)||(47241235-47241269)
chr3 (765-795)||(50106232-50106262)
chr3 (761-794)||(2929864-2929897)
chr3 (761-794)||(5137646-5137679)
chr3 (761-794)||(8104304-8104337)
chr3 (761-794)||(9794546-9794579)
chr3 (761-794)||(24978903-24978936)
chr3 (761-794)||(28227045-28227078)
chr3 (761-794)||(28686337-28686370)
chr3 (761-794)||(32078093-32078126)
chr3 (761-794)||(32100256-32100289)
chr3 (761-794)||(39144581-39144614)
chr3 (761-794)||(47915996-47916029)
chr3 (761-794)||(51166457-51166490)
chr3 (761-794)||(54747882-54747915)
[»] chr4 (22 HSPs)
chr4 (626-740)||(21781998-21782114)
chr4 (761-795)||(51817118-51817152)
chr4 (761-794)||(17609152-17609185)
chr4 (761-793)||(35877017-35877049)
chr4 (761-793)||(37390570-37390602)
chr4 (763-794)||(3761812-3761843)
chr4 (762-793)||(41855063-41855094)
chr4 (215-254)||(53232830-53232869)
chr4 (759-793)||(23949709-23949743)
chr4 (761-795)||(37669989-37670023)
chr4 (761-794)||(4294103-4294136)
chr4 (761-794)||(7258083-7258116)
chr4 (761-794)||(22128794-22128827)
chr4 (762-795)||(33501394-33501427)
chr4 (761-794)||(34246829-34246862)
chr4 (757-794)||(36507495-36507532)
chr4 (761-794)||(39915844-39915877)
chr4 (761-794)||(42507710-42507743)
chr4 (761-794)||(48380647-48380680)
chr4 (761-794)||(50690592-50690625)
chr4 (761-794)||(51779607-51779640)
chr4 (761-794)||(54270843-54270876)
[»] scaffold0131 (1 HSPs)
scaffold0131 (461-530)||(5411-5480)
[»] chr6 (8 HSPs)
chr6 (458-540)||(6849663-6849745)
chr6 (761-794)||(3787166-3787199)
chr6 (761-795)||(8493572-8493606)
chr6 (761-795)||(14310941-14310975)
chr6 (761-794)||(1114488-1114521)
chr6 (761-794)||(2010243-2010276)
chr6 (761-794)||(10364644-10364677)
chr6 (761-794)||(27080508-27080541)
[»] chr1 (22 HSPs)
chr1 (704-764)||(37492934-37492995)
chr1 (216-262)||(9949139-9949185)
chr1 (761-795)||(50942694-50942728)
chr1 (761-794)||(8462455-8462488)
chr1 (761-794)||(41529183-41529216)
chr1 (761-794)||(42334432-42334465)
chr1 (216-263)||(31730885-31730932)
chr1 (761-795)||(11353633-11353667)
chr1 (761-795)||(14203005-14203039)
chr1 (761-795)||(25792229-25792263)
chr1 (761-795)||(40132300-40132334)
chr1 (761-794)||(8712052-8712085)
chr1 (761-794)||(8768623-8768656)
chr1 (761-794)||(13985444-13985477)
chr1 (761-794)||(25984449-25984482)
chr1 (761-794)||(34967505-34967538)
chr1 (762-795)||(35150190-35150223)
chr1 (761-794)||(39501757-39501790)
chr1 (761-794)||(39640342-39640375)
chr1 (761-794)||(41457878-41457911)
chr1 (761-794)||(47038486-47038519)
chr1 (761-794)||(47393556-47393589)
[»] scaffold0197 (1 HSPs)
scaffold0197 (212-262)||(26286-26336)
[»] chr7 (12 HSPs)
chr7 (212-262)||(21312013-21312063)
chr7 (210-262)||(23572423-23572475)
chr7 (761-794)||(3264418-3264451)
chr7 (761-795)||(10200482-10200516)
chr7 (761-795)||(22624387-22624421)
chr7 (212-254)||(41082258-41082300)
chr7 (761-794)||(1643680-1643713)
chr7 (761-794)||(6696795-6696828)
chr7 (762-795)||(14314641-14314674)
chr7 (761-794)||(24685602-24685635)
chr7 (761-794)||(24924346-24924379)
chr7 (761-794)||(28234315-28234348)
[»] scaffold0006 (1 HSPs)
scaffold0006 (210-262)||(71680-71732)
[»] chr8 (16 HSPs)
chr8 (761-795)||(44012283-44012317)
chr8 (215-263)||(26647249-26647297)
chr8 (761-793)||(35455479-35455511)
chr8 (761-791)||(4135764-4135794)
chr8 (761-795)||(34865697-34865731)
chr8 (761-795)||(42159184-42159218)
chr8 (761-794)||(8378263-8378296)
chr8 (761-794)||(17911031-17911064)
chr8 (761-794)||(18673442-18673475)
chr8 (761-794)||(20091150-20091183)
chr8 (761-794)||(26746902-26746935)
chr8 (761-794)||(27667542-27667575)
chr8 (761-794)||(30852048-30852081)
chr8 (761-794)||(32629768-32629801)
chr8 (761-794)||(38896633-38896666)
chr8 (761-794)||(42927189-42927222)
[»] chr2 (16 HSPs)
chr2 (761-794)||(36443587-36443620)
chr2 (761-794)||(39293420-39293453)
chr2 (761-795)||(12123043-12123077)
chr2 (761-795)||(36068177-36068211)
chr2 (761-794)||(1684311-1684344)
chr2 (761-794)||(5669181-5669214)
chr2 (761-794)||(8341655-8341688)
chr2 (761-794)||(12467703-12467736)
chr2 (761-794)||(13196436-13196469)
chr2 (761-794)||(14943438-14943471)
chr2 (761-794)||(16062602-16062635)
chr2 (761-794)||(22050642-22050675)
chr2 (761-794)||(25899074-25899107)
chr2 (761-794)||(27244960-27244993)
chr2 (761-794)||(40833542-40833575)
chr2 (761-794)||(44710008-44710041)
[»] chr5 (14 HSPs)
chr5 (215-263)||(10711679-10711727)
chr5 (215-254)||(3293746-3293785)
chr5 (215-254)||(28641691-28641730)
chr5 (753-795)||(8077306-8077348)
chr5 (761-795)||(39895974-39896008)
chr5 (761-795)||(39990375-39990409)
chr5 (761-794)||(12503919-12503952)
chr5 (761-794)||(15268448-15268481)
chr5 (761-794)||(21582692-21582725)
chr5 (761-794)||(21772822-21772855)
chr5 (761-794)||(25784705-25784738)
chr5 (761-794)||(29816278-29816311)
chr5 (761-794)||(36487357-36487390)
chr5 (761-794)||(40555143-40555176)
[»] scaffold0154 (1 HSPs)
scaffold0154 (761-795)||(4154-4188)
[»] scaffold0041 (1 HSPs)
scaffold0041 (212-254)||(99390-99432)
[»] scaffold0160 (1 HSPs)
scaffold0160 (761-794)||(25935-25968)
[»] scaffold0057 (1 HSPs)
scaffold0057 (762-795)||(39837-39870)


Alignment Details
Target: chr3 (Bit Score: 72; Significance: 3e-32; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 564 - 764
Target Start/End: Complemental strand, 6821354 - 6821153
Alignment:
Q  564 aaagtcaaaagaaactgatatattaagaaaccaaatcaaatcatctcagcacaaattgtaccgaagagagcttgactagaaacagagtactacaa--tat 661  Q
    ||||| ||||||||||||||||||||||||  ||||||  || |||||||||||  |||| ||||||||| ||||| ||||||| |||| |||||  |||    
T  6821354 aaagttaaaagaaactgatatattaagaaaataaatcatgtcgtctcagcacaaggtgtatcgaagagagtttgaccagaaacaaagtattacaaagtat 6821255  T
Q  662 tagaaagatatgattaacaagcaaatgaagttaaataactatagttaaactgaaaataggatttagcctcaataattgataatcaaagtcgaataaaata 761  Q
     ||||| ||||||| |||||||||| |||    ||||| | ||||||||| ||||||||||||||||||| || ||||| | |||||||||||||||| |    
T  6821254 cagaaaaatatgatgaacaagcaaa-gaaagccaataattgtagttaaacagaaaataggatttagcctccatgattgacagtcaaagtcgaataaaaca 6821156  T
Q  762 tat 764  Q
    |||    
T  6821155 tat 6821153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 761 - 795
Target Start/End: Complemental strand, 38999551 - 38999517
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    |||||||||||||||||||||||||||||||||||    
T  38999551 atataatagaaaaaataacattaatgtttcattga 38999517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 48910514 - 48910547
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||||||||||||    
T  48910514 atataatagaaaaaataacattaatgtttcattg 48910547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 573 - 657
Target Start/End: Original strand, 7129121 - 7129205
Alignment:
Q  573 agaaactgatatattaagaaaccaaatcaaatcatctcagcacaaattgtaccgaagagagcttgactagaaacagagtactaca 657  Q
    |||||||||||||||||||||||||||||| | | ||||| | ||  ||| | ||||| |||||||| ||||||| |||| ||||    
T  7129121 agaaactgatatattaagaaaccaaatcaagttacctcagtaaaaggtgttctgaagaaagcttgacaagaaacaaagtaataca 7129205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Complemental strand, 8176464 - 8176430
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    |||||||||||||||||| ||||||||||||||||    
T  8176464 atataatagaaaaaataaaattaatgtttcattga 8176430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Complemental strand, 47241269 - 47241235
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    ||||||||| |||||||||||||||||||||||||    
T  47241269 atataataggaaaaataacattaatgtttcattga 47241235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 765 - 795
Target Start/End: Original strand, 50106232 - 50106262
Alignment:
Q  765 aatagaaaaaataacattaatgtttcattga 795  Q
    |||||||||||||||||||||||||||||||    
T  50106232 aatagaaaaaataacattaatgtttcattga 50106262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 2929864 - 2929897
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  2929864 atataataggaaaaataacattaatgtttcattg 2929897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 5137646 - 5137679
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  5137646 atataataggaaaaataacattaatgtttcattg 5137679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 8104337 - 8104304
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  8104337 atataataggaaaaataacattaatgtttcattg 8104304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 9794579 - 9794546
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||| ||||||||    
T  9794579 atataatagaaaaaataacattaatatttcattg 9794546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 24978936 - 24978903
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  24978936 atataataggaaaaataacattaatgtttcattg 24978903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 28227078 - 28227045
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  28227078 atataataggaaaaataacattaatgtttcattg 28227045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 28686337 - 28686370
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||| |||||||||||||||||||    
T  28686337 atataatagaaaaagtaacattaatgtttcattg 28686370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 32078126 - 32078093
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  32078126 atataataggaaaaataacattaatgtttcattg 32078093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 32100256 - 32100289
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  32100256 atataataggaaaaataacattaatgtttcattg 32100289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 39144581 - 39144614
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  39144581 atataataggaaaaataacattaatgtttcattg 39144614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 47915996 - 47916029
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||| ||||||||    
T  47915996 atataatagaaaaaataacattaatatttcattg 47916029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 51166457 - 51166490
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  51166457 atataataggaaaaataacattaatgtttcattg 51166490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 54747882 - 54747915
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||| ||||||||    
T  54747882 atataatagaaaaaataacattaatttttcattg 54747915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 8e-24; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 626 - 740
Target Start/End: Original strand, 21781998 - 21782114
Alignment:
Q  626 gaagagagcttgactagaaacagagtactaca--atattagaaagatatgattaacaagcaaatgaagttaaataactatagttaaactgaaaataggat 723  Q
    |||||||||||||| | ||||| |||||||||  |||| ||||| ||||||| |||||||||| |||| ||||||||| ||||||||| ||||||| |||    
T  21781998 gaagagagcttgaccaaaaacaaagtactacacaatatgagaaaaatatgataaacaagcaaacgaagctaaataactgtagttaaacagaaaataagat 21782097  T
Q  724 ttagcctcaataattga 740  Q
    |||||||| ||||||||    
T  21782098 ttagcctccataattga 21782114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 761 - 795
Target Start/End: Original strand, 51817118 - 51817152
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    |||||||||||||||||||||||||||||||||||    
T  51817118 atataatagaaaaaataacattaatgtttcattga 51817152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 17609152 - 17609185
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||||||||||||    
T  17609152 atataatagaaaaaataacattaatgtttcattg 17609185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 761 - 793
Target Start/End: Original strand, 35877017 - 35877049
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcatt 793  Q
    |||||||||||||||||||||||||||||||||    
T  35877017 atataatagaaaaaataacattaatgtttcatt 35877049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 761 - 793
Target Start/End: Complemental strand, 37390602 - 37390570
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcatt 793  Q
    |||||||||||||||||||||||||||||||||    
T  37390602 atataatagaaaaaataacattaatgtttcatt 37390570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 763 - 794
Target Start/End: Complemental strand, 3761843 - 3761812
Alignment:
Q  763 ataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||||||||||    
T  3761843 ataatagaaaaaataacattaatgtttcattg 3761812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 762 - 793
Target Start/End: Complemental strand, 41855094 - 41855063
Alignment:
Q  762 tataatagaaaaaataacattaatgtttcatt 793  Q
    ||||||||||||||||||||||||||||||||    
T  41855094 tataatagaaaaaataacattaatgtttcatt 41855063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 53232830 - 53232869
Alignment:
Q  215 tttgtgcaggcaggaacccacacaatcttgtgtgtggctc 254  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  53232830 tttgtgcaggcaggagcccacacaagcttgtgtgtggctc 53232869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 759 - 793
Target Start/End: Original strand, 23949709 - 23949743
Alignment:
Q  759 atatataatagaaaaaataacattaatgtttcatt 793  Q
    |||||||||||||||||||||||||||||| ||||    
T  23949709 atatataatagaaaaaataacattaatgttgcatt 23949743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Complemental strand, 37670023 - 37669989
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    ||||||||| |||||||||||||||||||||||||    
T  37670023 atataataggaaaaataacattaatgtttcattga 37669989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 4294103 - 4294136
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  4294103 atataataggaaaaataacattaatgtttcattg 4294136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 7258083 - 7258116
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||| |||||||||||||||||||    
T  7258083 atataatagaaaaagtaacattaatgtttcattg 7258116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 22128827 - 22128794
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||| ||||||||||||||||||||    
T  22128827 atataatagaaaagataacattaatgtttcattg 22128794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 762 - 795
Target Start/End: Complemental strand, 33501427 - 33501394
Alignment:
Q  762 tataatagaaaaaataacattaatgtttcattga 795  Q
    ||||||||||||| ||||||||||||||||||||    
T  33501427 tataatagaaaaagtaacattaatgtttcattga 33501394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 34246862 - 34246829
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||| |||||||||||||||||||||||||||||    
T  34246862 atattatagaaaaaataacattaatgtttcattg 34246829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 757 - 794
Target Start/End: Original strand, 36507495 - 36507532
Alignment:
Q  757 aaatatataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  36507495 aaatatataataggaaaaataaaattaatgtttcattg 36507532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 39915877 - 39915844
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  39915877 atataataggaaaaataacattaatgtttcattg 39915844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 42507710 - 42507743
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||| |||||||||||||||||||    
T  42507710 atataatagaaaaagtaacattaatgtttcattg 42507743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 48380680 - 48380647
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  48380680 atataataggaaaaataacattaatgtttcattg 48380647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 50690592 - 50690625
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  50690592 atataataggaaaaataacattaatgtttcattg 50690625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 51779640 - 51779607
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||| |||||||||||||||||||    
T  51779640 atataatagaaaaagtaacattaatgtttcattg 51779607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 54270876 - 54270843
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||| ||||||||    
T  54270876 atataatagaaaaaataacattaatatttcattg 54270843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 50; Significance: 5e-19; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 461 - 530
Target Start/End: Original strand, 5411 - 5480
Alignment:
Q  461 cacacacacttaacatcccgttgctatttcaacgtataaaacaatatcttttttaactactagtattctt 530  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| ||||||    
T  5411 cacaaacacttaacatccagttactatttcaacgtataaaacaatatctcttttaactactagaattctt 5480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 458 - 540
Target Start/End: Original strand, 6849663 - 6849745
Alignment:
Q  458 agtcacacacacttaacatcccgttgctatttcaacgtataaaacaatatcttttttaactactagtattcttttacccattt 540  Q
    |||||||||||||||||| || |||||||||| || |||| |||||| |||| |||||||||||||| ||| |||| ||||||    
T  6849663 agtcacacacacttaacaaccagttgctatttgaatgtatgaaacaaaatctcttttaactactagtgttcgtttaaccattt 6849745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 3787199 - 3787166
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||||||||||||    
T  3787199 atataatagaaaaaataacattaatgtttcattg 3787166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Original strand, 8493572 - 8493606
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    ||||||||| |||||||||||||||||||||||||    
T  8493572 atataataggaaaaataacattaatgtttcattga 8493606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Original strand, 14310941 - 14310975
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    ||||||||| |||||||||||||||||||||||||    
T  14310941 atataataggaaaaataacattaatgtttcattga 14310975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 1114488 - 1114521
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  1114488 atataataggaaaaataacattaatgtttcattg 1114521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 2010243 - 2010276
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  2010243 atataataggaaaaataacattaatgtttcattg 2010276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 10364644 - 10364677
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||| |||||||||||||||||||    
T  10364644 atataatagaaaaagtaacattaatgtttcattg 10364677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 27080508 - 27080541
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  27080508 atataataggaaaaataacattaatgtttcattg 27080541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 704 - 764
Target Start/End: Original strand, 37492934 - 37492995
Alignment:
Q  704 agttaaactgaaaataggatttagcctcaataattgataatcaaag-tcgaataaaatatat 764  Q
    |||||||||||||||||||||||||||| |||||||||| |||||| |||||||||| ||||    
T  37492934 agttaaactgaaaataggatttagcctccataattgatagtcaaagatcgaataaaacatat 37492995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 9949139 - 9949185
Alignment:
Q  216 ttgtgcaggcaggaacccacacaatcttgtgtgtggctcagccactg 262  Q
    |||||||||||||| ||||||||| |||||||||||||| |||||||    
T  9949139 ttgtgcaggcaggagcccacacaaccttgtgtgtggctccgccactg 9949185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 761 - 795
Target Start/End: Complemental strand, 50942728 - 50942694
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    |||||||||||||||||||||||||||||||||||    
T  50942728 atataatagaaaaaataacattaatgtttcattga 50942694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 8462455 - 8462488
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||||||||||||    
T  8462455 atataatagaaaaaataacattaatgtttcattg 8462488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 41529216 - 41529183
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||||||||||||    
T  41529216 atataatagaaaaaataacattaatgtttcattg 41529183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 42334432 - 42334465
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||||||||||||    
T  42334432 atataatagaaaaaataacattaatgtttcattg 42334465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 31730932 - 31730885
Alignment:
Q  216 ttgtgcaggcaggaacccacacaatcttgtgtgtggctcagccactgc 263  Q
    |||||||||||||| | ||||||| |||||||||||||| ||||||||    
T  31730932 ttgtgcaggcaggagctcacacaaccttgtgtgtggctccgccactgc 31730885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Complemental strand, 11353667 - 11353633
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    |||||||||||||| ||||||||||||||||||||    
T  11353667 atataatagaaaaagtaacattaatgtttcattga 11353633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Complemental strand, 14203039 - 14203005
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    ||||||||| |||||||||||||||||||||||||    
T  14203039 atataataggaaaaataacattaatgtttcattga 14203005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Complemental strand, 25792263 - 25792229
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    ||||||||| |||||||||||||||||||||||||    
T  25792263 atataataggaaaaataacattaatgtttcattga 25792229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Complemental strand, 40132334 - 40132300
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    ||||||||| |||||||||||||||||||||||||    
T  40132334 atataataggaaaaataacattaatgtttcattga 40132300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 8712052 - 8712085
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||| |||||||||||||||||||    
T  8712052 atataatagaaaaagtaacattaatgtttcattg 8712085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 8768623 - 8768656
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||| ||||||||    
T  8768623 atataatagaaaaaataacattaatatttcattg 8768656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 13985444 - 13985477
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  13985444 atataataggaaaaataacattaatgtttcattg 13985477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 25984482 - 25984449
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  25984482 atataataggaaaaataacattaatgtttcattg 25984449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 34967505 - 34967538
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||| ||||||||    
T  34967505 atataatagaaaaaataacattaatttttcattg 34967538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 762 - 795
Target Start/End: Original strand, 35150190 - 35150223
Alignment:
Q  762 tataatagaaaaaataacattaatgtttcattga 795  Q
    ||||||||||||||||||||||| ||||||||||    
T  35150190 tataatagaaaaaataacattaaagtttcattga 35150223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 39501790 - 39501757
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||| ||||||||    
T  39501790 atataatagaaaaaataacattaatatttcattg 39501757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 39640375 - 39640342
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||| ||||||||    
T  39640375 atataatagaaaaaataacattaatatttcattg 39640342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 41457878 - 41457911
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||| ||||||||    
T  41457878 atataatagaaaaaataacattaatatttcattg 41457911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 47038486 - 47038519
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  47038486 atataataggaaaaataacattaatgtttcattg 47038519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 47393556 - 47393589
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||| |||||||||||||||||||    
T  47393556 atataatagaaaaagtaacattaatgtttcattg 47393589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 26286 - 26336
Alignment:
Q  212 atgtttgtgcaggcaggaacccacacaatcttgtgtgtggctcagccactg 262  Q
    |||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  26286 atgtttgtgcaggcaggagcccacacaaccttgtgtgtggctccgccactg 26336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 21312013 - 21312063
Alignment:
Q  212 atgtttgtgcaggcaggaacccacacaatcttgtgtgtggctcagccactg 262  Q
    |||||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  21312013 atgtttgtgcaggcaggagcccacacaaccttgtgtgtggctccgccactg 21312063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 23572423 - 23572475
Alignment:
Q  210 aaatgtttgtgcaggcaggaacccacacaatcttgtgtgtggctcagccactg 262  Q
    ||||||||||| |||||||| ||||||||| |||||||||||||| |||||||    
T  23572423 aaatgtttgtgtaggcaggagcccacacaaccttgtgtgtggctccgccactg 23572475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 3264451 - 3264418
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||||||||||||    
T  3264451 atataatagaaaaaataacattaatgtttcattg 3264418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Original strand, 10200482 - 10200516
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    ||||||||| |||||||||||||||||||||||||    
T  10200482 atataataggaaaaataacattaatgtttcattga 10200516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Complemental strand, 22624421 - 22624387
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    |||||||||||||| ||||||||||||||||||||    
T  22624421 atataatagaaaaagtaacattaatgtttcattga 22624387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 41082258 - 41082300
Alignment:
Q  212 atgtttgtgcaggcaggaacccacacaatcttgtgtgtggctc 254  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||    
T  41082258 atgtttgtgcaggcaggagcccactcaaccttgtgtgtggctc 41082300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 1643680 - 1643713
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  1643680 atataataggaaaaataacattaatgtttcattg 1643713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 6696795 - 6696828
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||| |||||||||||||||||||||||||    
T  6696795 atataataaaaaaaataacattaatgtttcattg 6696828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 762 - 795
Target Start/End: Complemental strand, 14314674 - 14314641
Alignment:
Q  762 tataatagaaaaaataacattaatgtttcattga 795  Q
    |||||||||||||||||||||||| |||||||||    
T  14314674 tataatagaaaaaataacattaatatttcattga 14314641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 24685602 - 24685635
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  24685602 atataataggaaaaataacattaatgtttcattg 24685635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 24924346 - 24924379
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||| ||||||||    
T  24924346 atataatagaaaaaataacattaatttttcattg 24924379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 28234315 - 28234348
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  28234315 atataataggaaaaataacattaatgtttcattg 28234348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 71680 - 71732
Alignment:
Q  210 aaatgtttgtgcaggcaggaacccacacaatcttgtgtgtggctcagccactg 262  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  71680 aaatatttgtgcaggcaggagcccacacaaccttgtgtgtggctccgccactg 71732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 761 - 795
Target Start/End: Complemental strand, 44012317 - 44012283
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    |||||||||||||||||||||||||||||||||||    
T  44012317 atataatagaaaaaataacattaatgtttcattga 44012283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 26647297 - 26647249
Alignment:
Q  215 tttgtgcaggcaggaacccacacaatcttgtgtgtggctcagccactgc 263  Q
    ||||||||||||||| ||||||||| |||||||||||||| ||| ||||    
T  26647297 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcccctgc 26647249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 761 - 793
Target Start/End: Complemental strand, 35455511 - 35455479
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcatt 793  Q
    |||||||||||||||||||||||||||||||||    
T  35455511 atataatagaaaaaataacattaatgtttcatt 35455479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 791
Target Start/End: Complemental strand, 4135794 - 4135764
Alignment:
Q  761 atataatagaaaaaataacattaatgtttca 791  Q
    |||||||||||||||||||||||||||||||    
T  4135794 atataatagaaaaaataacattaatgtttca 4135764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Complemental strand, 34865731 - 34865697
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    |||||||||||||||||||||||||| ||||||||    
T  34865731 atataatagaaaaaataacattaatgattcattga 34865697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Original strand, 42159184 - 42159218
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    ||||||||||||||||||||||||||||| |||||    
T  42159184 atataatagaaaaaataacattaatgttttattga 42159218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 8378263 - 8378296
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  8378263 atataataggaaaaataacattaatgtttcattg 8378296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 17911064 - 17911031
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||| |||||||||||||||||||    
T  17911064 atataatagaaaaattaacattaatgtttcattg 17911031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 18673475 - 18673442
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||| |||||||||||||||||||    
T  18673475 atataatagaaaaagtaacattaatgtttcattg 18673442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 20091150 - 20091183
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  20091150 atataataggaaaaataacattaatgtttcattg 20091183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 26746935 - 26746902
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||||||| |||||||||||||||    
T  26746935 atataatagaaaaaataatattaatgtttcattg 26746902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 27667575 - 27667542
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  27667575 atataataggaaaaataacattaatgtttcattg 27667542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 30852081 - 30852048
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  30852081 atataataggaaaaataacattaatgtttcattg 30852048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 32629768 - 32629801
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||||||| ||||    
T  32629768 atataatagaaaaaataacattaatgttttattg 32629801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 38896633 - 38896666
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  38896633 atataataggaaaaataacattaatgtttcattg 38896666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 42927222 - 42927189
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  42927222 atataataggaaaaataacattaatgtttcattg 42927189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 36443620 - 36443587
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||||||||||||    
T  36443620 atataatagaaaaaataacattaatgtttcattg 36443587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 39293453 - 39293420
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||||||||||||    
T  39293453 atataatagaaaaaataacattaatgtttcattg 39293420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Original strand, 12123043 - 12123077
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    ||||||||||||||||||||||||||||| |||||    
T  12123043 atataatagaaaaaataacattaatgttttattga 12123077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Complemental strand, 36068211 - 36068177
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    ||||||||| |||||||||||||||||||||||||    
T  36068211 atataataggaaaaataacattaatgtttcattga 36068177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 1684311 - 1684344
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||| |||||||||||||||||||    
T  1684311 atataatagaaaaagtaacattaatgtttcattg 1684344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 5669181 - 5669214
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  5669181 atataataggaaaaataacattaatgtttcattg 5669214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 8341655 - 8341688
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||| |||||||||||||||||||    
T  8341655 atataatagaaaaagtaacattaatgtttcattg 8341688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 12467736 - 12467703
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||| ||||||||||||||||    
T  12467736 atataatagaaaaaatagcattaatgtttcattg 12467703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 13196469 - 13196436
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||||||| |||||||||||||||    
T  13196469 atataatagaaaaaataatattaatgtttcattg 13196436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 14943438 - 14943471
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  14943438 atataataggaaaaataacattaatgtttcattg 14943471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 16062635 - 16062602
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  16062635 atataataggaaaaataacattaatgtttcattg 16062602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 22050642 - 22050675
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||| ||||||||    
T  22050642 atataatagaaaaaataacattaatatttcattg 22050675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 25899107 - 25899074
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||| |||||||||||||||||||    
T  25899107 atataatagaaaaagtaacattaatgtttcattg 25899074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 27244993 - 27244960
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  27244993 atataataggaaaaataacattaatgtttcattg 27244960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 40833575 - 40833542
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||| |||||||||||||||||||    
T  40833575 atataatagaaaaagtaacattaatgtttcattg 40833542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 44710008 - 44710041
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||| ||||||||    
T  44710008 atataatagaaaaaataacattaatatttcattg 44710041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 10711679 - 10711727
Alignment:
Q  215 tttgtgcaggcaggaacccacacaatcttgtgtgtggctcagccactgc 263  Q
    ||||||||||||||| ||||||||| |||||||||||||| ||| ||||    
T  10711679 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcccctgc 10711727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 3293785 - 3293746
Alignment:
Q  215 tttgtgcaggcaggaacccacacaatcttgtgtgtggctc 254  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  3293785 tttgtgcaggcaggagcccacacaaccttgtgtgtggctc 3293746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 28641691 - 28641730
Alignment:
Q  215 tttgtgcaggcaggaacccacacaatcttgtgtgtggctc 254  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  28641691 tttgtgcaggcaggagcccacacaaccttgtgtgtggctc 28641730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 753 - 795
Target Start/End: Complemental strand, 8077348 - 8077306
Alignment:
Q  753 aataaaatatataatagaaaaaataacattaatgtttcattga 795  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||    
T  8077348 aataaaagatataatagaaaaaataacattaatattttattga 8077306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Original strand, 39895974 - 39896008
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    |||||||||||||||||||| ||||||||||||||    
T  39895974 atataatagaaaaaataacagtaatgtttcattga 39896008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Original strand, 39990375 - 39990409
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    ||||||||| |||||||||||||||||||||||||    
T  39990375 atataataggaaaaataacattaatgtttcattga 39990409  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 12503952 - 12503919
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  12503952 atataataggaaaaataacattaatgtttcattg 12503919  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 15268448 - 15268481
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||| ||||||||||||||||||    
T  15268448 atataatagaaaaaacaacattaatgtttcattg 15268481  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 21582692 - 21582725
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||| ||||||||    
T  21582692 atataatagaaaaaataacattaatatttcattg 21582725  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 21772822 - 21772855
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  21772822 atataataggaaaaataacattaatgtttcattg 21772855  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 25784705 - 25784738
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  25784705 atataataggaaaaataacattaatgtttcattg 25784738  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 29816311 - 29816278
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  29816311 atataataggaaaaataacattaatgtttcattg 29816278  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 36487390 - 36487357
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    |||||||||||||||||||||||||| |||||||    
T  36487390 atataatagaaaaaataacattaatgcttcattg 36487357  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Complemental strand, 40555176 - 40555143
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||||||||||||||||||| ||||||||    
T  40555176 atataatagaaaaaataacattaatatttcattg 40555143  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 761 - 795
Target Start/End: Original strand, 4154 - 4188
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattga 795  Q
    |||||||||||||| ||||||||||||||||||||    
T  4154 atataatagaaaaagtaacattaatgtttcattga 4188  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 99390 - 99432
Alignment:
Q  212 atgtttgtgcaggcaggaacccacacaatcttgtgtgtggctc 254  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||    
T  99390 atgtttgtgcaggcaggagcccactcaaccttgtgtgtggctc 99432  T

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Target: scaffold0160 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 794
Target Start/End: Original strand, 25935 - 25968
Alignment:
Q  761 atataatagaaaaaataacattaatgtttcattg 794  Q
    ||||||||| ||||||||||||||||||||||||    
T  25935 atataataggaaaaataacattaatgtttcattg 25968  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 762 - 795
Target Start/End: Complemental strand, 39870 - 39837
Alignment:
Q  762 tataatagaaaaaataacattaatgtttcattga 795  Q
    ||||| ||||||||||||||||||||||||||||    
T  39870 tataacagaaaaaataacattaatgtttcattga 39837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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