View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5502-Insertion-2 (Length: 1061)

Name: NF5502-Insertion-2
Description: NF5502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5502-Insertion-2
NF5502-Insertion-2
[»] chr6 (11 HSPs)
chr6 (8-894)||(7978631-7979531)
chr6 (29-381)||(8031867-8032219)
chr6 (20-183)||(7971788-7971951)
chr6 (20-183)||(8041737-8041900)
chr6 (804-934)||(34179264-34179395)
chr6 (736-852)||(32853539-32853655)
chr6 (879-934)||(256748-256803)
chr6 (734-817)||(3484235-3484318)
chr6 (734-817)||(10142829-10142912)
chr6 (736-789)||(20611250-20611303)
chr6 (707-808)||(27534361-27534462)
[»] scaffold0531 (1 HSPs)
scaffold0531 (29-381)||(3113-3465)
[»] chr7 (12 HSPs)
chr7 (31-389)||(14198547-14198905)
chr7 (734-852)||(35074166-35074284)
chr7 (734-852)||(16865867-16865985)
chr7 (738-852)||(21702381-21702495)
chr7 (734-817)||(38152598-38152681)
chr7 (734-817)||(42908363-42908446)
chr7 (736-798)||(31425680-31425742)
chr7 (734-822)||(17884930-17885018)
chr7 (708-933)||(29292299-29292526)
chr7 (855-910)||(5432255-5432310)
chr7 (879-933)||(19440268-19440322)
chr7 (736-773)||(33840774-33840811)
[»] chr2 (17 HSPs)
chr2 (31-236)||(41382134-41382339)
chr2 (29-122)||(43853132-43853225)
chr2 (813-911)||(17845662-17845758)
chr2 (826-910)||(34544592-34544676)
chr2 (734-852)||(24414409-24414527)
chr2 (855-911)||(29657015-29657071)
chr2 (877-933)||(34214913-34214969)
chr2 (737-852)||(13830432-13830547)
chr2 (734-817)||(30846638-30846721)
chr2 (878-933)||(31601023-31601078)
chr2 (734-808)||(9632091-9632165)
chr2 (734-852)||(10208707-10208825)
chr2 (734-852)||(36128385-36128503)
chr2 (736-810)||(37473049-37473123)
chr2 (861-911)||(37786954-37787004)
chr2 (736-817)||(18485334-18485415)
chr2 (734-851)||(45256517-45256634)
[»] chr4 (17 HSPs)
chr4 (707-912)||(19549178-19549383)
chr4 (734-817)||(48459185-48459268)
chr4 (838-910)||(33915904-33915976)
chr4 (736-808)||(44317245-44317317)
chr4 (734-817)||(568093-568176)
chr4 (837-932)||(25265405-25265500)
chr4 (736-817)||(11172646-11172727)
chr4 (869-910)||(12505802-12505843)
chr4 (736-817)||(21544257-21544338)
chr4 (832-932)||(21957070-21957171)
chr4 (855-934)||(12075888-12075967)
chr4 (759-853)||(31782318-31782413)
chr4 (837-911)||(3505008-3505082)
chr4 (837-911)||(3513933-3514007)
chr4 (836-934)||(25299089-25299187)
chr4 (734-808)||(31918882-31918956)
chr4 (735-852)||(11027772-11027889)
[»] chr5 (10 HSPs)
chr5 (707-911)||(39422026-39422229)
chr5 (734-853)||(23045289-23045409)
chr5 (847-924)||(12709222-12709299)
chr5 (736-842)||(6093393-6093499)
chr5 (758-909)||(18452165-18452318)
chr5 (734-799)||(10822869-10822934)
chr5 (814-910)||(35583829-35583925)
chr5 (755-864)||(12457171-12457281)
chr5 (875-924)||(12770500-12770549)
chr5 (734-811)||(13402322-13402399)
[»] chr3 (7 HSPs)
chr3 (743-817)||(40796472-40796546)
chr3 (736-817)||(2487466-2487547)
chr3 (31-126)||(38827385-38827480)
chr3 (734-817)||(44252434-44252517)
chr3 (830-912)||(30905047-30905129)
chr3 (876-934)||(40890140-40890198)
chr3 (734-852)||(44179020-44179138)
[»] chr8 (8 HSPs)
chr8 (833-934)||(4280136-4280237)
chr8 (31-158)||(34409200-34409327)
chr8 (734-817)||(1063202-1063285)
chr8 (743-817)||(2183957-2184031)
chr8 (861-934)||(39379834-39379907)
chr8 (736-852)||(34301431-34301547)
chr8 (734-852)||(24927642-24927760)
chr8 (736-817)||(15174185-15174266)
[»] scaffold0036 (1 HSPs)
scaffold0036 (734-858)||(33088-33212)
[»] chr1 (5 HSPs)
chr1 (734-817)||(36187534-36187617)
chr1 (707-817)||(13390121-13390231)
chr1 (758-907)||(8880107-8880256)
chr1 (734-822)||(17134640-17134728)
chr1 (734-852)||(20774325-20774443)
[»] scaffold0157 (1 HSPs)
scaffold0157 (869-910)||(14634-14675)
[»] scaffold0244 (1 HSPs)
scaffold0244 (878-911)||(4859-4892)


Alignment Details
Target: chr6 (Bit Score: 728; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 8 - 894
Target Start/End: Complemental strand, 7979531 - 7978631
Alignment:
Q  8 caggtataaccctacttgttctatcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatag 107  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  7979531 caggtataaccctacttgttctttcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatag 7979432  T
Q  108 ataccatgaattgggtcaacatgcttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggtagaaattggtgttaacattgtttat 207  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7979431 ataccatgaattaggtcaacatgcttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggtagaaattggtgttaacattgtttat 7979332  T
Q  208 atggtcactgggggaacatcattgcaaaagttccatgatattgtgtgtccaagctgcaaaaagataaagttgacctatttcatcatgatatttgcttcag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7979331 atggtcactgggggaacatcattgcaaaagttccatgatattgtgtgtccaagctgcaaaaagataaagttgacctatttcatcatgatatttgcttcag 7979232  T
Q  308 ttcactttgtgttatctcatctccctgatttcaactcaatttctggtgtgtccttggcagcagcagtcatgtccttcaggtataaaacatttatattttt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7979231 ttcactttgtgttatctcatctccctgatttcaactcaatttctggtgtgtccttggcagcagcagtcatgtccttcaggtataaaacttttatattttt 7979132  T
Q  408 caaaatactttcaatcaatgataattctcaagttattaaata-ttttgattgggatgtgttatagttaatgtggcatacagtttcacgctataagcgatc 506  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7979131 caaaatattttcaatcaatgataattctcaagttattaaatatttttgattgggatgtgttatagttaatgtggcatacagtttcacgctataagcgatc 7979032  T
Q  507 ttcgtcactgatttaatactagacagttcatattatacatttaagtttcacacaaataactgaactcatctctcgacttagatcgagcggcccagatgta 606  Q
    || | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7979031 tttgccaccgatttaatactagacagttcatattatacatttaagtttcacacaaataactgaactcatctctcgacttagatcgagcagcccagatgta 7978932  T
Q  607 gtactgcgtgatgtagttgttgcacctaatccaaatccaatttatctagttgaatgaggaaaatactacgaagaatggggcagggtggggacatgtttta 706  Q
    |||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||  |||||    
T  7978931 gtactgtgtgatgtagttgttgcgcctaatccaaatccaatttttctagttgaatgagaaaaatactacgaagaatggggcaaggtggggacagctttta 7978832  T
Q  707 ----------ccccataccctactctcaaaggcttgaccgttaccatacccatac---ttaacggggatgagaaatcgaatactatccccatccccaata 793  Q
              |||||||||||||||||||||||||| | |||||| ||  |||||   ||||||||||||||||||||||||| |||||||||||||| |    
T  7978831 cctttcacgtccccataccctactctcaaaggcttgtcggttaccctaatcatactaattaacggggatgagaaatcgaataccatccccatccccaaca 7978732  T
Q  794 ggttcggatatccccaccacatcctcatctctgcaatggataattttttcaattaaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcatt 893  Q
    ||||||| |||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7978731 ggttcgggtatctccaccccatcctcatccccgcaatggataattttttcaattaaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcatt 7978632  T
Q  894 a 894  Q
    |    
T  7978631 a 7978631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 29 - 381
Target Start/End: Original strand, 8031867 - 8032219
Alignment:
Q  29 tatcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaattgggtcaaca 128  Q
    ||||||||| ||||||  | || ||| | ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||    
T  8031867 tatcatggaccatcactctgtatacattgtggcaaatggttgagatgcatgaaatgattccgggaaaacgttttgatagataccatgaattaggtcaaca 8031966  T
Q  129 tgcttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggtagaaattggtgttaacattgtttatatggtcactgggggaacatca 228  Q
    ||| |||||  |||| ||||| |||||||||||||| |||||||||||| | |||||| |||| |   ||||||| || |||||||| || ||  |||||    
T  8031967 tgcgtttggcgaaaagttaggcctttatattgtggttcctcaacaacttatagtagaagttgggggcgacattgtctacatggtcaccggaggtgcatca 8032066  T
Q  229 ttgcaaaagttccatgatattgtgtgtccaagctgcaaaaagataaagttgacctatttcatcatgatatttgcttcagttcactttgtgttatctcatc 328  Q
    ||||  ||||||||  |||  |||||| |||| |||||||| || || |||||||||||||| ||||| ||||| || | ||| ||||| || | |||||    
T  8032067 ttgcggaagttccacaatacagtgtgttcaagttgcaaaaatatcaaattgacctatttcattatgatctttgcctctgctcaatttgtattgtgtcatc 8032166  T
Q  329 tccctgatttcaactcaatttctggtgtgtccttggcagcagcagtcatgtcc 381  Q
    | ||  | || ||||| ||||| ||||| |||||||  |||||||||||||||    
T  8032167 taccaaacttgaactccatttccggtgtatccttggttgcagcagtcatgtcc 8032219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 7971951 - 7971788
Alignment:
Q  20 tacttgttctatcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaatt 119  Q
    |||||||||| ||||||||||||||| | |||||  | ||||||||||||||||||||||| |||||||| ||||||||| |||||| |||  |||||||    
T  7971951 tacttgttctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaatt 7971852  T
Q  120 gggtcaacatgcttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggta 183  Q
     || ||||||||||||||  |||| |||||  | |  |||||| ||||||||||||||||||||    
T  7971851 agggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggta 7971788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 8041737 - 8041900
Alignment:
Q  20 tacttgttctatcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaatt 119  Q
    ||||||| || ||||||||||||||| | |||||  | ||||||||||||||||||||||| |||||||| ||||||||| |||||| |||  |||||||    
T  8041737 tacttgtcctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaatt 8041836  T
Q  120 gggtcaacatgcttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggta 183  Q
     || ||||||||||||||  |||| |||||  | |  |||||| ||||||||||||||||||||    
T  8041837 agggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggta 8041900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 804 - 934
Target Start/End: Complemental strand, 34179395 - 34179264
Alignment:
Q  804 tccccaccacatcctcatctctgcaatggataattttttcaattaaaaaa-gaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaa 902  Q
    ||||| || ||||| ||||||||||||||||||||||||  | ||||||| |||||| |||||| ||   |||   ||||||| ||||||||||||||||    
T  34179395 tccccgccccatccccatctctgcaatggataattttttttagtaaaaaaagaagtatttttcaaccctaggcgtgatgttgtaatgcattatccagcaa 34179296  T
Q  903 agagatgatagggatcagtgactatggtgatg 934  Q
    ||||||||||  ||||  ||| ||||||||||    
T  34179295 agagatgatattgatcgatgagtatggtgatg 34179264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 736 - 852
Target Start/End: Original strand, 32853539 - 32853655
Alignment:
Q  736 gttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatggata 835  Q
    |||||| |||||||||  |||||||||||||||| ||||   |||||||||||| |  ||||||| ||||||| || ||||| | || | ||| || |||    
T  32853539 gttaccctacccatacccaacggggatgagaaattgaatctcatccccatccccgacgggttcgggtatccccgccccatccccgtccccgcattgaata 32853638  T
Q  836 attttttcaattaaaaa 852  Q
    ||||||| ||| |||||    
T  32853639 atttttttaataaaaaa 32853655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 879 - 934
Target Start/End: Complemental strand, 256803 - 256748
Alignment:
Q  879 atgttgtcatgcattatccagcaaagagatgatagggatcagtgactatggtgatg 934  Q
    ||||||| ||||||||||||||||| |||||||   ||||| ||||||||||||||    
T  256803 atgttgtaatgcattatccagcaaatagatgatgacgatcaatgactatggtgatg 256748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 734 - 817
Target Start/End: Complemental strand, 3484318 - 3484235
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||||| |||||||||  |||||||||||||||| |||| | |||||| ||||| |  ||||||| ||||||| || |||||    
T  3484318 ccgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtatccccgccccatcc 3484235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 734 - 817
Target Start/End: Complemental strand, 10142912 - 10142829
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||||| |||||||||| |||||||||||||||| |||| | |||| | ||||| |  ||||||| ||||||| || |||||    
T  10142912 ccgttaccctacccatactcaacggggatgagaaattgaatcccatcctcgtccccgacgggttcgggtatccccgccccatcc 10142829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 736 - 789
Target Start/End: Complemental strand, 20611303 - 20611250
Alignment:
Q  736 gttaccatacccatacttaacggggatgagaaatcgaatactatccccatcccc 789  Q
    ||||||||||||||||  |||||||||||||||| ||||   ||||||||||||    
T  20611303 gttaccatacccatacccaacggggatgagaaattgaatctcatccccatcccc 20611250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 707 - 808
Target Start/End: Original strand, 27534361 - 27534462
Alignment:
Q  707 ccccataccctactctcaaaggcttgaccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatcc 806  Q
    |||||||||| | ||||| |  ||| ||||||||| |||||||||  |||||||||||||||| ||||   |||||| ||||| |  ||||||| |||||    
T  27534361 ccccatacccgattctcatatacttaaccgttaccctacccatacccaacggggatgagaaattgaatcacatccccgtccccgacgggttcgggtatcc 27534460  T
Q  807 cc 808  Q
    ||    
T  27534461 cc 27534462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 137; Significance: 5e-71; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 29 - 381
Target Start/End: Complemental strand, 3465 - 3113
Alignment:
Q  29 tatcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaattgggtcaaca 128  Q
    ||||||||||||||||  | || ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||    
T  3465 tatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgataggtaccatgaactgggacaaca 3366  T
Q  129 tgcttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggtagaaattggtgttaacattgtttatatggtcactgggggaacatca 228  Q
     || |||||  |||| ||||| ||||||||||||||||||||||||||||| |||||| |||| || ||||||||||| |||||||| || ||  |||||    
T  3365 cgcgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgtagtagaagttggggtgaacattgtttacatggtcaccggaggtgcatca 3266  T
Q  229 ttgcaaaagttccatgatattgtgtgtccaagctgcaaaaagataaagttgacctatttcatcatgatatttgcttcagttcactttgtgttatctcatc 328  Q
     ||| |||||||||  |||  ||||||||||| |||||||| || || ||||| |||||||| ||||| ||||| || | ||| ||||| || | |||||    
T  3265 ctgcgaaagttccacaatacagtgtgtccaagttgcaaaaatatcaaattgacatatttcattatgatctttgcctctgctcaatttgtattgtgtcatc 3166  T
Q  329 tccctgatttcaactcaatttctggtgtgtccttggcagcagcagtcatgtcc 381  Q
    | ||  | || ||||| ||||||||||| || ||||  |||||||||||||||    
T  3165 taccaaacttgaactccatttctggtgtatctttggtggcagcagtcatgtcc 3113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 3e-48; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 31 - 389
Target Start/End: Complemental strand, 14198905 - 14198547
Alignment:
Q  31 tcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaattgggtcaacatg 130  Q
    |||||| |||||||||| |||||  | ||||||||||||||||||||||||||||| || || |||||||| |||||||| |||||| |||||||| |||    
T  14198905 tcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatg 14198806  T
Q  131 cttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggtagaaattggtgttaacattgtttatatggtcactgggggaacatcatt 230  Q
    |||||||  |||| || ||||| |||||||| ||||| ||||||||| | || ||| | || ||||||||||| || ||||| || || |||| ||| ||    
T  14198805 cttttggtgaaaagttgggtctgtatattgttgtgccacaacaacttattgttgaagtcggcgttaacattgtctacatggtaaccggaggaaaatcttt 14198706  T
Q  231 gcaaaagttccatgatattgtgtgtccaagctgcaaaaagataaagttgacctatttcatcatgatatttgcttcagttcactttgtgttatctcatctc 330  Q
    ||| ||||| |||||||  |||||| |    |||||||| || || ||||| ||||| || ||||| ||||| || ||||||||||| || ||||| |||    
T  14198705 gcagaagtttcatgataccgtgtgttccgattgcaaaaaaatcaaattgacttattttataatgatttttgcctctgttcactttgtcttgtctcacctc 14198606  T
Q  331 cctgatttcaactcaatttctggtgtgtccttggcagcagcagtcatgtccttcaggta 389  Q
    ||| | || ||||| ||||||||||| || || || || || |||||||| || |||||    
T  14198605 cctaacttgaactctatttctggtgtctctttagccgccgctgtcatgtcgttaaggta 14198547  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 734 - 852
Target Start/End: Original strand, 35074166 - 35074284
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatgga 833  Q
    |||||||| |||||||||  ||||||||||||||||||||| | |||||| ||||| |  ||||||| ||||||| || ||||||| || | ||| || |    
T  35074166 ccgttaccctacccatacccaacggggatgagaaatcgaatcccatccccgtccccgacgggttcgggtatccccgccccatcctcgtccccgcattgaa 35074265  T
Q  834 taattttttcaattaaaaa 852  Q
    ||||||||| ||| |||||    
T  35074266 taatttttttaataaaaaa 35074284  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 734 - 852
Target Start/End: Original strand, 16865867 - 16865985
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatgga 833  Q
    |||||||| |||||||||  |||||||||||||||| |||| | |||||| ||||| |  ||||||| |||||||||| ||||| | || | ||| || |    
T  16865867 ccgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtatccccaccccatccccgtccccgcattgaa 16865966  T
Q  834 taattttttcaattaaaaa 852  Q
    ||||||||| ||| |||||    
T  16865967 taatttttttaataaaaaa 16865985  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 738 - 852
Target Start/End: Original strand, 21702381 - 21702495
Alignment:
Q  738 taccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatggataat 837  Q
    |||| |||||||||| |||||||||||||||| |||| |||||||| ||||| |  ||||||| ||||||| || ||||| | || | ||| || |||||    
T  21702381 taccctacccatactcaacggggatgagaaattgaatcctatccccgtccccgacgggttcgggtatccccgccccatccccgtccccgcattgaataat 21702480  T
Q  838 tttttcaattaaaaa 852  Q
    ||||| ||| |||||    
T  21702481 ttttttaataaaaaa 21702495  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 734 - 817
Target Start/End: Original strand, 38152598 - 38152681
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||||| |||||||||| |||||||||||||||| |||| | |||||| ||||| || |||| || ||||||| || |||||    
T  38152598 ccgttaccctacccatactcaacggggatgagaaattgaatcccatccccgtccccgatgggtttgggtatccccgccccatcc 38152681  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 734 - 817
Target Start/End: Complemental strand, 42908446 - 42908363
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||||| |||||||||  || ||||||||||||| |||| | |||||| |||| ||| ||||||| ||| ||||||||||||    
T  42908446 ccgttaccctacccatacccaaaggggatgagaaattgaatcccatccccgtcccgaatgggttcgggtattcccaccacatcc 42908363  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 736 - 798
Target Start/End: Original strand, 31425680 - 31425742
Alignment:
Q  736 gttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttc 798  Q
    |||||| |||||||||  |||||||||||||||| ||||   |||||||||||||||||||||    
T  31425680 gttaccctacccatacacaacggggatgagaaattgaatctcatccccatccccaataggttc 31425742  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 734 - 822
Target Start/End: Original strand, 17884930 - 17885018
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatc 822  Q
    |||||||| |||||||| | |||||||||||||||| ||||   |||||| ||||| |  |||| || |||||||||| ||||||||||    
T  17884930 ccgttaccctacccatattcaacggggatgagaaattgaatctcatccccgtccccgacgggtttgggtatccccacctcatcctcatc 17885018  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 708 - 933
Target Start/End: Original strand, 29292299 - 29292526
Alignment:
Q  708 cccataccctactctcaaaggcttgaccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccc 807  Q
    ||||||| ||||| ||| | ||||  |||||||| |||||||||  ||||| |||| ||||||||||   |||| | |||||||  || |||| ||||||    
T  29292299 cccatactctactttcatatgcttatccgttaccctacccatacccaacggagatgtgaaatcgaatctcatcctcgtccccaacgggatcgggtatccc 29292398  T
Q  808 caccacatcctcatctctgcaatggataatttttt--caattaaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaaga 905  Q
    |  | ||||| |||| ||| | |||||||||||||  | | ||||||  ||||| |||| || | || ||  |||||||| |||||||||||| ||||||    
T  29292399 cgacccatccccatccctgtagtggataattttttttctaataaaaataaagtattttttaggcccgagcagaatgttgtaatgcattatccaacaaaga 29292498  T
Q  906 gatgatagggatcagtgactatggtgat 933  Q
    ||| ||   ||||| ||| |||||||||    
T  29292499 gattatgatgatcaatgattatggtgat 29292526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 855 - 910
Target Start/End: Complemental strand, 5432310 - 5432255
Alignment:
Q  855 aagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatga 910  Q
    ||||| ||||||||| ||  ||||||||||| ||||||||||| ||||||||||||    
T  5432310 aagtatttttcagccccgaactcaatgttgtaatgcattatcctgcaaagagatga 5432255  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 879 - 933
Target Start/End: Complemental strand, 19440322 - 19440268
Alignment:
Q  879 atgttgtcatgcattatccagcaaagagatgatagggatcagtgactatggtgat 933  Q
    ||||||| ||||||||||||||||| |||||||   ||||| |||||||||||||    
T  19440322 atgttgtaatgcattatccagcaaatagatgatgacgatcaatgactatggtgat 19440268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 736 - 773
Target Start/End: Original strand, 33840774 - 33840811
Alignment:
Q  736 gttaccatacccatacttaacggggatgagaaatcgaa 773  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  33840774 gttaccctacccatactcaacggggatgagaaatcgaa 33840811  T

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Target: chr2 (Bit Score: 78; Significance: 9e-36; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 31 - 236
Target Start/End: Complemental strand, 41382339 - 41382134
Alignment:
Q  31 tcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaattgggtcaacatg 130  Q
    ||||||||||||||  ||||||| || ||||||||||||||||||||||| |||||||| ||||||||| |||||| |||  |||||||||| |||||||    
T  41382339 tcatggatcatcactctctacaccctgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaacatg 41382240  T
Q  131 cttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggtagaaattggtgttaacattgtttatatggtcactgggggaacatcatt 230  Q
    | |||||  |||| |||||  | |  |||||| |||||||||||||||||||| || |||| ||  ||||||| || |||||||| || ||  |||||||    
T  41382239 cgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtggacattgtctacatggtcaccggaggtgcatcatt 41382140  T
Q  231 gcaaaa 236  Q
    ||||||    
T  41382139 gcaaaa 41382134  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 43853132 - 43853225
Alignment:
Q  29 tatcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaattggg 122  Q
    |||||||||| |||||  ||||||| || |||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||| |||||    
T  43853132 tatcatggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgagttggg 43853225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 813 - 911
Target Start/End: Complemental strand, 17845758 - 17845662
Alignment:
Q  813 catcctcatctctgcaatggataattttttcaattaaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatgat 911  Q
    |||| ||||| | ||| ||||||| ||||| |||  ||||||||||| ||||||||||| |||||||||||||  |||||||| ||||||||| |||||    
T  17845758 catcttcatccccgcagtggataaattttttaat--aaaaagaagtatttttcagcctcaggctcaatgttgtattgcattattcagcaaagaaatgat 17845662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 826 - 910
Target Start/End: Complemental strand, 34544676 - 34544592
Alignment:
Q  826 gcaatggataattttttcaattaaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatga 910  Q
    |||||||||| ||| || ||| |||| | ||||| ||||||||| || || ||||||||| |||||||||||| |||||||||||    
T  34544676 gcaatggatattttatttaataaaaataaaagtatttttcagccccgagcgcaatgttgtaatgcattatccaacaaagagatga 34544592  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 734 - 852
Target Start/End: Complemental strand, 24414527 - 24414409
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatgga 833  Q
    |||||||| |||||||||  |||||||||||||||| |||| | |||||| ||||| |  ||||||| ||||||| || ||||| | || | ||| || |    
T  24414527 ccgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtatccccgccccatccccgtccccgcattgaa 24414428  T
Q  834 taattttttcaattaaaaa 852  Q
    ||||||||| ||| |||||    
T  24414427 taatttttttaataaaaaa 24414409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 855 - 911
Target Start/End: Complemental strand, 29657071 - 29657015
Alignment:
Q  855 aagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatgat 911  Q
    ||||| ||||||||| || || ||||||||| ||||||||||||| |||||||||||    
T  29657071 aagtatttttcagccccgagcgcaatgttgtaatgcattatccaggaaagagatgat 29657015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 877 - 933
Target Start/End: Complemental strand, 34214969 - 34214913
Alignment:
Q  877 caatgttgtcatgcattatccagcaaagagatgatagggatcagtgactatggtgat 933  Q
    ||||||||| |||||||||||||||||||||||||   ||||  |||||||||||||    
T  34214969 caatgttgtaatgcattatccagcaaagagatgatgatgatctatgactatggtgat 34214913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 737 - 852
Target Start/End: Original strand, 13830432 - 13830547
Alignment:
Q  737 ttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatggataa 836  Q
    ||||| |||||||||  |||||||||||||||| ||||   |||||| ||||| |  ||||||| ||||||| || ||||| |||| | ||| || ||||    
T  13830432 ttaccctacccatacccaacggggatgagaaattgaatcacatccccgtccccgacgggttcgggtatccccgccccatccccatccccgcattgaataa 13830531  T
Q  837 ttttttcaattaaaaa 852  Q
    |||||| ||| |||||    
T  13830532 tttttttaataaaaaa 13830547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 734 - 817
Target Start/End: Original strand, 30846638 - 30846721
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||||| |||||||||  |||||||||||||||| |||| | |||||| ||||| |  ||||||| ||||||| || |||||    
T  30846638 ccgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtatccccgccccatcc 30846721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 878 - 933
Target Start/End: Complemental strand, 31601078 - 31601023
Alignment:
Q  878 aatgttgtcatgcattatccagcaaagagatgatagggatcagtgactatggtgat 933  Q
    |||||||| |||||||||||| ||||||||||||   ||||| |||||||||||||    
T  31601078 aatgttgtaatgcattatccaacaaagagatgatgacgatcaatgactatggtgat 31601023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 734 - 808
Target Start/End: Original strand, 9632091 - 9632165
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatcccc 808  Q
    |||||||| |||||||||  |||||||||||||||| ||||   |||||| |||||||  ||||||| |||||||    
T  9632091 ccgttaccctacccatacccaacggggatgagaaattgaatctcatccccgtccccaacgggttcgggtatcccc 9632165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 734 - 852
Target Start/End: Complemental strand, 10208825 - 10208707
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatgga 833  Q
    |||||||| ||||||||   |||||||||||||||| ||||   |||||| ||||| |  ||||||| ||||||| || ||||||| || | ||| || |    
T  10208825 ccgttaccctacccatatccaacggggatgagaaattgaatctcatccccgtccccgacgggttcgggtatccccgccccatcctcttccccgcattgaa 10208726  T
Q  834 taattttttcaattaaaaa 852  Q
    ||||||||| ||| |||||    
T  10208725 taatttttttaataaaaaa 10208707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 734 - 852
Target Start/End: Complemental strand, 36128503 - 36128385
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatgga 833  Q
    |||||||| |||||||||  ||||||||||| |||| ||||   |||||| ||||| |  ||||| | ||||||| || ||||| | |||||||| || |    
T  36128503 ccgttaccctacccatacccaacggggatgaaaaattgaatctcatccccgtccccgacgggttcaggtatccccgccccatccccgtctctgcattgaa 36128404  T
Q  834 taattttttcaattaaaaa 852  Q
    ||||||||| ||| |||||    
T  36128403 taatttttttaataaaaaa 36128385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 736 - 810
Target Start/End: Complemental strand, 37473123 - 37473049
Alignment:
Q  736 gttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccac 810  Q
    |||||| |||||||||  |||||||||||||||| ||||   |||||||||||| |  ||||||| |||||||||    
T  37473123 gttaccctacccatacccaacggggatgagaaattgaatctcatccccatccccgacgggttcgggtatccccac 37473049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 861 - 911
Target Start/End: Complemental strand, 37787004 - 37786954
Alignment:
Q  861 ttttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatgat 911  Q
    |||||| ||||| || ||||||||| ||||||||| |||||||||||||||    
T  37787004 ttttcaacctcgtgcacaatgttgtaatgcattattcagcaaagagatgat 37786954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 736 - 817
Target Start/End: Original strand, 18485334 - 18485415
Alignment:
Q  736 gttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||| ||||||||   |||||||||||||||| |||| | |||||| |||||||| ||||||| |||  ||||| |||||    
T  18485334 gttaccctacccatatccaacggggatgagaaattgaatcccatccccgtccccaatgggttcgggtatttccacctcatcc 18485415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 734 - 851
Target Start/End: Original strand, 45256517 - 45256634
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatgga 833  Q
    |||||||| |||| |||  ||||||||||||||||| ||||   |||||| ||||| || |||| || |||||||||| ||||| | || | ||| || |    
T  45256517 ccgttaccctacctatatctaacggggatgagaaattgaatctcatccccgtccccgatgggtttgggtatccccaccccatccccgtccccgcattgaa 45256616  T
Q  834 taattttttcaattaaaa 851  Q
    ||||||||| ||| ||||    
T  45256617 taatttttttaataaaaa 45256634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 707 - 912
Target Start/End: Complemental strand, 19549383 - 19549178
Alignment:
Q  707 ccccataccctactctcaaaggcttgaccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatcc 806  Q
    |||||||||| |||||||||  |||  |  ||||| |||||||||  |||||| | ||||||||||||   |||||| ||||| |  | ||||| || ||    
T  19549383 ccccataccccactctcaaatacttaccatttaccctacccatacccaacgggaaagagaaatcgaatctcatccccgtccccgacggattcgggtagcc 19549284  T
Q  807 ccaccacatcctcatctctgcaatggataattttttcaattaaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagag 906  Q
    || |  |||||| ||| | ||||||||||||| ||| ||| || ||||||||| ||||||||  ||||||||||||| | |||||||||||| |||| ||    
T  19549283 ccgctccatccttatccccgcaatggataattattttaataaataaagaagtatttttcagctccgggctcaatgttttaatgcattatccaacaaaaag 19549184  T
Q  907 atgata 912  Q
    ||||||    
T  19549183 atgata 19549178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 734 - 817
Target Start/End: Original strand, 48459185 - 48459268
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||||| ||| |||||| |||||||||||||||| ||||   |||||| |||||||| ||||||| |||||||||| |||||    
T  48459185 ccgttaccctactcatactcaacggggatgagaaattgaatctcatccccgtccccaatgggttcgggtatccccaccccatcc 48459268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 838 - 910
Target Start/End: Original strand, 33915904 - 33915976
Alignment:
Q  838 tttttcaattaaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatga 910  Q
    ||||| ||| |||||||||||| |||||||||  | |||||||||||| |||||||| ||| |||||||||||    
T  33915904 tttttaaataaaaaaagaagtatttttcagcccagagctcaatgttgtaatgcattacccaacaaagagatga 33915976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 736 - 808
Target Start/End: Original strand, 44317245 - 44317317
Alignment:
Q  736 gttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatcccc 808  Q
    |||||| |||||||||| |||||||||||||||| |||| | |||||||||||| |  ||||||| |||||||    
T  44317245 gttaccctacccatactcaacggggatgagaaattgaatcccatccccatccccgacgggttcgggtatcccc 44317317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 734 - 817
Target Start/End: Original strand, 568093 - 568176
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||||| |||||||| |||| | ||||||||||| |||| | |||||| ||||||||  |||||| ||| ||||||||||||    
T  568093 ccgttaccctacccatatttaatgaggatgagaaattgaatcccatccccgtccccaatgagttcgggtattcccaccacatcc 568176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 837 - 932
Target Start/End: Complemental strand, 25265500 - 25265405
Alignment:
Q  837 ttttttcaattaaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatgatagggatcagtgactatggtga 932  Q
    |||||| ||| |||| | ||||| |||| ||| ||| || ||||||||| ||||||||||||||||||| ||| | | ||||| ||||||||||||    
T  25265500 ttttttaaataaaaataaaagtattttttagcttcgagcgcaatgttgtaatgcattatccagcaaagaaatgttggcgatcaatgactatggtga 25265405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 736 - 817
Target Start/End: Original strand, 11172646 - 11172727
Alignment:
Q  736 gttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||| ||||||||   |||||||||||||||| |||| | |||||| |||||||| ||||||| ||| |||||| |||||    
T  11172646 gttaccctacccatatccaacggggatgagaaattgaatcccatccccgtccccaatgggttcgggtattcccaccgcatcc 11172727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 869 - 910
Target Start/End: Complemental strand, 12505843 - 12505802
Alignment:
Q  869 ctcgggctcaatgttgtcatgcattatccagcaaagagatga 910  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  12505843 ctcggactcaatgttgtaatgcattatccagcaaagagatga 12505802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 736 - 817
Target Start/End: Original strand, 21544257 - 21544338
Alignment:
Q  736 gttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||| |||||||||  |||||||||||||||| ||||   ||| || ||||||||| |||||| ||| ||||||||||||    
T  21544257 gttaccttacccatacccaacggggatgagaaattgaatctaatctccgtccccaataagttcgggtattcccaccacatcc 21544338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 832 - 932
Target Start/End: Complemental strand, 21957171 - 21957070
Alignment:
Q  832 gataattttttcaattaaaaa-agaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatgatagggatcagtgactatggt 930  Q
    ||||||||||| || |||||| | ||||| |||||||||||  |  ||||||||| |||||||||||| ||||||||| || | ||||  ||||||||||    
T  21957171 gataatttttttaaataaaaataaaagtatttttcagcctcatgtgcaatgttgtaatgcattatccaacaaagagattatggtgatcgatgactatggt 21957072  T
Q  931 ga 932  Q
    ||    
T  21957071 ga 21957070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 855 - 934
Target Start/End: Complemental strand, 12075967 - 12075888
Alignment:
Q  855 aagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatgatagggatcagtgactatggtgatg 934  Q
    ||||| |||||| ||||| || || |||||| |||||||||||| ||||||||||||   ||||| || |||||||||||    
T  12075967 aagtatttttcaacctcgagcgcattgttgtaatgcattatccaacaaagagatgatgacgatcaatggctatggtgatg 12075888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 759 - 853
Target Start/End: Original strand, 31782318 - 31782413
Alignment:
Q  759 ggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatggat-aattttttcaattaaaaaa 853  Q
    ||||||||||| |||| |||||||| |||||||| ||||||| |||  ||||| ||||| |||| | ||| ||||| |||||||| ||| ||||||    
T  31782318 ggatgagaaattgaatcctatccccgtccccaatgggttcgggtatttccaccccatccccatccccgcagtggatcaatttttttaataaaaaaa 31782413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 837 - 911
Target Start/End: Original strand, 3505008 - 3505082
Alignment:
Q  837 ttttttcaattaaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatgat 911  Q
    |||||| || ||||||||||||| |||||| ||   ||| ||||||||| ||||||||||||| ||| |||||||    
T  3505008 tttttttaaataaaaaagaagtatttttcatccgttggcgcaatgttgtaatgcattatccagtaaaaagatgat 3505082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 837 - 911
Target Start/End: Original strand, 3513933 - 3514007
Alignment:
Q  837 ttttttcaattaaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatgat 911  Q
    |||||| || |||||||||| || |||| | ||  |||| ||||||||| ||||||||||||||||| |||||||    
T  3513933 tttttttaaataaaaaagaaatattttttatccgtgggcgcaatgttgtaatgcattatccagcaaaaagatgat 3514007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 836 - 934
Target Start/End: Complemental strand, 25299187 - 25299089
Alignment:
Q  836 attttttcaattaaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatgatagggatcagtgactatggtgatg 934  Q
    ||||||| ||| |||| | ||||| |||||||||| | |  |||| |||| ||||||||||||||||| |||  ||   ||||||||||||||||||||    
T  25299187 atttttttaataaaaataaaagtatttttcagccttgagtgcaattttgtaatgcattatccagcaaaaagactatgacgatcagtgactatggtgatg 25299089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 734 - 808
Target Start/End: Complemental strand, 31918956 - 31918882
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatcccc 808  Q
    |||||||| || ||||||  |||||||||||||||| |||| | |||||| ||||| || ||||||| |||||||    
T  31918956 ccgttaccctatccatacccaacggggatgagaaattgaatcccatccccgtccccgatgggttcgggtatcccc 31918882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 735 - 852
Target Start/End: Original strand, 11027772 - 11027889
Alignment:
Q  735 cgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatggat 834  Q
    ||||||| |||||||||   ||||||||||||||| ||||   |||||| ||||| | |||||||| ||||||| || ||||| | || | ||| || ||    
T  11027772 cgttaccctacccataccctacggggatgagaaattgaatctcatccccgtccccgacaggttcgggtatccccgcctcatccccgtccccgcattgaat 11027871  T
Q  835 aattttttcaattaaaaa 852  Q
    |||||||| ||| |||||    
T  11027872 aatttttttaataaaaaa 11027889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 3e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 707 - 911
Target Start/End: Original strand, 39422026 - 39422229
Alignment:
Q  707 ccccataccctactctcaaaggcttgaccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatcc 806  Q
    ||||||||||||||| ||||  ||| ||||||| |||||  ||||  ||||  |||||||| |||||||| ||||||||||   | |||||||| |||||    
T  39422026 ccccataccctactcacaaatacttaaccgttatcatacttatacccaacgatgatgagaagtcgaataccatccccatccttgacaggttcgggtatcc 39422125  T
Q  807 ccaccacatcctcatctctgcaatggataattt-tttcaattaaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaaga 905  Q
     | || ||||| |||| | |||||||||||||| ||| ||| |||||| ||||| |||||||||||   ||||||||| | ||  |||||||| |||| |    
T  39422126 gcgccccatccccatccccgcaatggataatttattttaataaaaaaataagtatttttcagcctcatactcaatgttttaat--attatccatcaaata 39422223  T
Q  906 gatgat 911  Q
    ||||||    
T  39422224 gatgat 39422229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 734 - 853
Target Start/End: Complemental strand, 23045409 - 23045289
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatgga 833  Q
    |||||||| ||||||||   |||||||||||||||| |||| | |||||| |||||||| ||||||| ||| ||| || ||||| |||| | ||||||||    
T  23045409 ccgttaccctacccatatccaacggggatgagaaattgaatcccatccccgtccccaatgggttcgggtattcccgccccatccccatccccgcaatgga 23045310  T
Q  834 t-aattttttcaattaaaaaa 853  Q
    | |||||||| ||| ||||||    
T  23045309 tcaatttttttaataaaaaaa 23045289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 847 - 924
Target Start/End: Original strand, 12709222 - 12709299
Alignment:
Q  847 taaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatgatagggatcagtgac 924  Q
    ||||||||||||| ||||||||| |   |||||||||||  ||||||||||||||||||||||||   ||||||||||    
T  12709222 taaaaaagaagtatttttcagccacaaactcaatgttgtattgcattatccagcaaagagatgatgacgatcagtgac 12709299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 736 - 842
Target Start/End: Complemental strand, 6093499 - 6093393
Alignment:
Q  736 gttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatggata 835  Q
    |||||| ||||||||   |||||||||||||||| |||| |||||||| ||||| |  ||||||||||||||| || ||||| | || | ||| || |||    
T  6093499 gttaccctacccatatccaacggggatgagaaattgaatcctatccccgtccccgacgggttcggatatccccgcctcatccccgtccccgcattgaata 6093400  T
Q  836 atttttt 842  Q
    |||||||    
T  6093399 atttttt 6093393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 758 - 909
Target Start/End: Complemental strand, 18452318 - 18452165
Alignment:
Q  758 gggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatggataatttt--ttcaattaaaaaaga 855  Q
    ||||||||||| ||||| | |||||| ||||| || ||||||   |||||| |||||| | ||||   |||||| ||||||||  || ||| |||| | |    
T  18452318 gggatgagaaaccgaatcccatccccttccccgatgggttcgtgcatccccgccacattcccatcctcgcaatgtataattttcttttaataaaaataaa 18452219  T
Q  856 agtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatg 909  Q
    ||||||||| |||| ||  | ||||||||| ||||||||||||||||| |||||    
T  18452218 agtaatttttagccccgaacgcaatgttgtaatgcattatccagcaaaaagatg 18452165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 734 - 799
Target Start/End: Complemental strand, 10822934 - 10822869
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcg 799  Q
    |||||||||||| |||||  |||| |||||||||||||||  | |||||| |||||||||||||||    
T  10822934 ccgttaccatactcatacccaacgaggatgagaaatcgaaccccatccccgtccccaataggttcg 10822869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 814 - 910
Target Start/End: Original strand, 35583829 - 35583925
Alignment:
Q  814 atcctcatctctgcaatggataattttttcaattaaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatga 910  Q
    |||||||||  |||| |||||| ||||||  |  |||| | ||||| ||||||||| || || ||||||||| |||||||||||| |||||||||||    
T  35583829 atcctcatccatgcagtggatacttttttttaaaaaaataaaagtatttttcagccacgagcgcaatgttgtaatgcattatccaacaaagagatga 35583925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 755 - 864
Target Start/End: Original strand, 12457171 - 12457281
Alignment:
Q  755 acggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatggataa-ttttttcaattaaaaaa 853  Q
    ||||| ||||||||||||||   |||||| ||| |||| ||||| | ||||||| ||| |||| ||| || ||| ||||||| |||||| ||| ||||||    
T  12457171 acgggtatgagaaatcgaatcgcatccccgtcctcaatgggttcaggtatccccgccatatccccatttccgcagtggataatttttttgaataaaaaaa 12457270  T
Q  854 gaagtaatttt 864  Q
    |||||| ||||    
T  12457271 gaagtattttt 12457281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 875 - 924
Target Start/End: Original strand, 12770500 - 12770549
Alignment:
Q  875 ctcaatgttgtcatgcattatccagcaaagagatgatagggatcagtgac 924  Q
    |||||||||||  ||||||||||||||||||||||||   ||||||||||    
T  12770500 ctcaatgttgtattgcattatccagcaaagagatgatgacgatcagtgac 12770549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 734 - 811
Target Start/End: Complemental strand, 13402399 - 13402322
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccacc 811  Q
    |||||||| |||| ||||  |||||||||||||||| ||||   |||||| ||||| || ||||||| ||||||||||    
T  13402399 ccgttaccctacctatacccaacggggatgagaaattgaatctcatccccgtccccgatgggttcgggtatccccacc 13402322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 743 - 817
Target Start/End: Complemental strand, 40796546 - 40796472
Alignment:
Q  743 tacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||||||| |||||||||||||||| ||||   |||||| |||||||||||||||| ||| ||||||||||||    
T  40796546 tacccatactcaacggggatgagaaattgaatctcatccccgtccccaataggttcgggtattcccaccacatcc 40796472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 736 - 817
Target Start/End: Original strand, 2487466 - 2487547
Alignment:
Q  736 gttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||| ||||||||   |||||||||||||||| ||||   ||||||||||||||| ||||||| ||| ||||||||||||    
T  2487466 gttaccttacccatatccaacggggatgagaaattgaatttcatccccatccccaatgggttcgggtattcccaccacatcc 2487547  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 38827480 - 38827385
Alignment:
Q  31 tcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaattgggtcaa 126  Q
    |||||| |||| || ||||||||  | |||||||||||||||||||||||||| ||||| |||||  | || ||||| || ||||| |||||||||    
T  38827480 tcatgggtcattaccttctacactatatggcaaatggttgagatgcatgaaatagttcccggaaagagattggataggtatcatgagttgggtcaa 38827385  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 734 - 817
Target Start/End: Original strand, 44252434 - 44252517
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||||| |||||||||  |||||||||||||||| |||| | |||||| ||||| |  ||||||| ||||||| || |||||    
T  44252434 ccgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtatccccgccccatcc 44252517  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 830 - 912
Target Start/End: Complemental strand, 30905129 - 30905047
Alignment:
Q  830 tggataattttttcaattaaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatgata 912  Q
    ||||||||||||| ||| || | | ||||| |||||| || || || ||||||||| ||||||||| || |||||||||||||    
T  30905129 tggataatttttttaataaatataaaagtatttttcaaccccgagcgcaatgttgtaatgcattattcaacaaagagatgata 30905047  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 876 - 934
Target Start/End: Original strand, 40890140 - 40890198
Alignment:
Q  876 tcaatgttgtcatgcattatccagcaaagagatgatagggatcagtgactatggtgatg 934  Q
    |||||||||| ||||||||||||| ||| ||||||||  ||||| |||||||| |||||    
T  40890140 tcaatgttgtaatgcattatccagtaaatagatgataacgatcaatgactatgatgatg 40890198  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 734 - 852
Target Start/End: Original strand, 44179020 - 44179138
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatgga 833  Q
    |||||||| |||||||||  |||| ||||||||||| ||||   |||||| ||||| | |||||||| ||||||| || ||||| | || | ||| || |    
T  44179020 ccgttaccctacccatacccaacgtggatgagaaattgaatctcatccccgtccccgacaggttcgggtatccccgccccatccccgtccccgcattgaa 44179119  T
Q  834 taattttttcaattaaaaa 852  Q
    ||||||||| ||| |||||    
T  44179120 taatttttttaataaaaaa 44179138  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 833 - 934
Target Start/End: Complemental strand, 4280237 - 4280136
Alignment:
Q  833 ataattttttcaattaaaaaagaagtaattttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatgatagggatcagtgactatggtga 932  Q
    ||||||||||  | |||||||||||||  |||||||| || |||||||||||| ||||||||||||| |||  |||||||| ||| | ||||||| ||||    
T  4280237 ataattttttttaataaaaaagaagtatctttcagccccgagctcaatgttgtaatgcattatccagtaaattgatgatagcgattaatgactatagtga 4280138  T
Q  933 tg 934  Q
    ||    
T  4280137 tg 4280136  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 34409200 - 34409327
Alignment:
Q  31 tcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgatagataccatgaattgggtcaacatg 130  Q
    |||||||| |||||||| | ||| || |||||||||||||| |||||||||||||| || |||| | | ||||| || || |||||  | ||||||||||    
T  34409200 tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg 34409299  T
Q  131 cttttgggaaaaaattaggtctttatat 158  Q
    |||||||   |||||| ||||| |||||    
T  34409300 cttttggaccaaaattgggtctatatat 34409327  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 734 - 817
Target Start/End: Original strand, 1063202 - 1063285
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||||| |||| ||||  |||||||||||||||| ||||   |||||||||||| || ||||||| |||||||||| |||||    
T  1063202 ccgttaccctacctatacccaacggggatgagaaattgaatctcatccccatccccgatgggttcgggtatccccaccccatcc 1063285  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 743 - 817
Target Start/End: Complemental strand, 2184031 - 2183957
Alignment:
Q  743 tacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||||| | |||||||||||||||| ||||   |||||| |||||||| ||||||| ||| ||||||||||||    
T  2184031 tacccatattcaacggggatgagaaattgaatttcatccccgtccccaatgggttcgggtattcccaccacatcc 2183957  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 861 - 934
Target Start/End: Complemental strand, 39379907 - 39379834
Alignment:
Q  861 ttttcagcctcgggctcaatgttgtcatgcattatccagcaaagagatgatagggatcagtgactatggtgatg 934  Q
    ||||||||||||  | ||||||||| |||||||||||| ||||||||||||    |||| ||||||||||||||    
T  39379907 ttttcagcctcgaacacaatgttgtaatgcattatccaacaaagagatgatgtcaatcaatgactatggtgatg 39379834  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 736 - 852
Target Start/End: Complemental strand, 34301547 - 34301431
Alignment:
Q  736 gttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatggata 835  Q
    |||||| |||||||||  |||||||||||||||| |||| | |||||| ||||| |  ||||||| ||||||| || ||||| | || | ||| || |||    
T  34301547 gttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtatccccgccccatccccgtccccgcattgaata 34301448  T
Q  836 attttttcaattaaaaa 852  Q
    ||||||| ||| |||||    
T  34301447 atttttttaataaaaaa 34301431  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 734 - 852
Target Start/End: Original strand, 24927642 - 24927760
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatgga 833  Q
    |||||||| |||||||||  |||||||||||||||| |||| | |||||| ||||| |  ||||||| ||||||   | ||||||| || | ||| || |    
T  24927642 ccgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtatccctgtctcatcctcgtccccgcattgaa 24927741  T
Q  834 taattttttcaattaaaaa 852  Q
    ||||||||| ||| |||||    
T  24927742 taatttttttaataaaaaa 24927760  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 736 - 817
Target Start/End: Complemental strand, 15174266 - 15174185
Alignment:
Q  736 gttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||| |||||||| | || ||||||||||||| ||||  ||||||| |||||||| ||||||| ||| ||| || |||||    
T  15174266 gttaccctacccatattcaatggggatgagaaattgaatcttatccccgtccccaatgggttcgggtattcccgccccatcc 15174185  T

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Target: scaffold0036 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 734 - 858
Target Start/End: Original strand, 33088 - 33212
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatgga 833  Q
    |||||||| |||||||||  |||||| ||||||||| ||||   |||||| ||||| |  | ||||| |||||||||||||||| |||| | ||| || |    
T  33088 ccgttaccctacccatacccaacgggaatgagaaattgaatctcatccccgtccccgacggattcgggtatccccaccacatccccatccccgcattgaa 33187  T
Q  834 taattttttcaattaaaaaagaagt 858  Q
    ||||||||| ||| |||| ||||||    
T  33188 taatttttttaataaaaatagaagt 33212  T

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Target: chr1 (Bit Score: 36; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 734 - 817
Target Start/End: Complemental strand, 36187617 - 36187534
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcc 817  Q
    |||||||| |||||||||  |||||||||||||||| |||| | |||||| ||||| || | ||||| |||||||||| |||||    
T  36187617 ccgttaccctacccatacccaacggggatgagaaattgaatcccatccccgtccccgatggattcgggtatccccaccccatcc 36187534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 707 - 817
Target Start/End: Original strand, 13390121 - 13390231
Alignment:
Q  707 ccccataccctactctcaaaggcttgaccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatcc 806  Q
    |||||||||| | ||||| |  ||| ||||||||| ||||||||   |||||||||||||||| |||| | |||||| ||||| |  ||||||| |||||    
T  13390121 ccccatacccgattctcatatacttaaccgttaccctacccatatccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtatcc 13390220  T
Q  807 ccaccacatcc 817  Q
    ||||| |||||    
T  13390221 ccaccccatcc 13390231  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 758 - 907
Target Start/End: Original strand, 8880107 - 8880256
Alignment:
Q  758 gggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatggataattttttcaattaaaaaagaag 857  Q
    |||||||||||||||||   |||||| | || ||| ||||||| ||||||| || |||| ||||| | | | ||||||  ||||| ||| || | | |||    
T  8880107 gggatgagaaatcgaatctcatccccgttcctaatgggttcgggtatccccgccccatcatcatccccgtagtggatatattttttaataaatataaaag 8880206  T
Q  858 taattttcagcctcgggctcaatgttgtcatgcattatccagcaaagaga 907  Q
    ||||||| |||| || |  |||| |||| |||||||||||||||||||||    
T  8880207 taatttttagccccgagtgcaattttgtaatgcattatccagcaaagaga 8880256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 734 - 822
Target Start/End: Original strand, 17134640 - 17134728
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatc 822  Q
    |||||||| ||| |||||| ||| |||||||||||| ||||   ||| || |||||||  |||||||||||||||||| ||||| ||||    
T  17134640 ccgttaccctactcatactcaacagggatgagaaattgaatctcatctccgtccccaacgggttcggatatccccaccccatccccatc 17134728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 734 - 852
Target Start/End: Original strand, 20774325 - 20774443
Alignment:
Q  734 ccgttaccatacccatacttaacggggatgagaaatcgaatactatccccatccccaataggttcggatatccccaccacatcctcatctctgcaatgga 833  Q
    |||||||| ||||||||   |||||||||||||||| |||| | |||||| ||||| |  ||||||| ||||||| || ||||| | || | ||| || |    
T  20774325 ccgttaccctacccatatccaacggggatgagaaattgaatcccatccccgtccccgacgggttcgggtatccccgccccatccccgtccccgcattgaa 20774424  T
Q  834 taattttttcaattaaaaa 852  Q
    ||||||||| ||| |||||    
T  20774425 taatttttttaataaaaaa 20774443  T

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Target: scaffold0157 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 869 - 910
Target Start/End: Original strand, 14634 - 14675
Alignment:
Q  869 ctcgggctcaatgttgtcatgcattatccagcaaagagatga 910  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  14634 ctcggactcaatgttgtaatgcattatccagcaaagagatga 14675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 878 - 911
Target Start/End: Complemental strand, 4892 - 4859
Alignment:
Q  878 aatgttgtcatgcattatccagcaaagagatgat 911  Q
    |||||||| |||||||||||||||||||||||||    
T  4892 aatgttgtaatgcattatccagcaaagagatgat 4859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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