View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5502-Insertion-3 (Length: 1050)
Name: NF5502-Insertion-3
Description: NF5502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5502-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 644 - 1010
Target Start/End: Complemental strand, 31762210 - 31761842
Alignment:
| Q |
644 |
taattggaaatgacgaaaaaagacactggagaaagctgtccgaatccgaactacttgtgttggcttacannnnnnnnnnnnattgggaatataagatggc |
743 |
Q |
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| T |
31762210 |
taattggaaatgacgaaaaaagacactggagaaagctgtccgaatccgaactacttgtgttggcttacatttttattttttattgggaatataagatggc |
31762111 |
T |
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| Q |
744 |
ctaaatttgagaaaaaattaacacaaagacattgaattgaactttaaaagatcagnnnnnnnnnacgagtgtcatgagacacttgttaacattttcaatg |
843 |
Q |
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| T |
31762110 |
ctaaatttgagaaaaaattaacagaaagacattgaattcaactttaaaa-atcagttttttgc--cgagtgtcattagacacttgttaacattttctatg |
31762014 |
T |
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| Q |
844 |
aggattctgaattaacttgagtatcatactccattcaatacatgtgttgtcaaaacatcggtaaaaccatgtacttcattttacgatatgagtgacaa-t |
942 |
Q |
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| T |
31762013 |
agaattgtgaattaacttgagtatcatacttcattcaatacatgtgttgtcaaaacatcgataaaattatgtgcttcattttacgatatgagtgacaatt |
31761914 |
T |
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| Q |
943 |
ttgatttctc-acacttattcgtaaagttatt-atcttt-aaataagattt-ctcatagactctacctctac |
1010 |
Q |
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| T |
31761913 |
ttgatttctcaacacttcttcgtaaagttattaatctttcaaataagatttgctcatagactccacctctac |
31761842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 343 - 547
Target Start/End: Complemental strand, 31762515 - 31762311
Alignment:
| Q |
343 |
ttggtaatgctgttatagaaattaaaactatacctcaatgattatgagtagaagtgtgtgatgaagggtcttcaatgtttgctctgttccgaggtttaga |
442 |
Q |
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| T |
31762515 |
ttggtaatgctgttatagaaaataaaaccatacctcaatgattatgagtagaagtgtttgatgaagggtcttcaatgtttgctctgttctgaggtttaga |
31762416 |
T |
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| Q |
443 |
aaagtggagtgtttttgcagtgttgtgttgtgaagagtaacataagagaagtggggtttttggttttaccctttggtagatggatacagaaatgacacag |
542 |
Q |
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| T |
31762415 |
aaagtggagtgtttttgcagtgttttgttgtgaagagtaacataagagaagtggggtttttggttttaccctttggtggatggatacagaaatgacacag |
31762316 |
T |
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| Q |
543 |
ctgga |
547 |
Q |
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| T |
31762315 |
ctgga |
31762311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 169
Target Start/End: Complemental strand, 31762723 - 31762689
Alignment:
| Q |
135 |
caacaacgttagcaacgaacttcataagaatcatc |
169 |
Q |
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| T |
31762723 |
caacaacgttaacaacgaacttcataagaatcatc |
31762689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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