View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5502-Insertion-5 (Length: 904)
Name: NF5502-Insertion-5
Description: NF5502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5502-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 528; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 6 - 628
Target Start/End: Complemental strand, 41796137 - 41795516
Alignment:
| Q |
6 |
cagaaataacatagttttaacttttgagatatgctaattaattagctataactagttttatgaatcaagaagctttcctgagtttgaaatgactcctaac |
105 |
Q |
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| T |
41796137 |
cagaaataacatagttttaacttttgagatatgctaattaattagctataactagttttatgaatcaagaagctttcctgagtttgaaatgactcctaac |
41796038 |
T |
|
| Q |
106 |
aattcctaagctataataccagttcctcgagccttttagataatgtgtttcggttctttatatcattatatgtatatatggtcatggactaatctcatat |
205 |
Q |
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| T |
41796037 |
aattcctaagctataataccagttcctcgagccttttagataatgtgtttcggttctttatatcattat-tgtatatatggtcatggactaatctcatat |
41795939 |
T |
|
| Q |
206 |
tagtatattccatttattattaacttcttgtttaaggatattccnnnnnnnnnnctccatatacatggcatcttgttaatcatactattatcattattat |
305 |
Q |
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| T |
41795938 |
tagtatattccatttattattaacttcttgcttaaggatattccatttttttt--tccatatacatggcatcttgttaatcatactattatcattattat |
41795841 |
T |
|
| Q |
306 |
ttactccaataacatagcaacggtatgtaatcaaatgcttagagtaagttggttggtaaaaaatagttagagcaatgcaatcaattacttattaaaaaag |
405 |
Q |
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| T |
41795840 |
ttactccaataacatagcaacggtacgtaatcaaatgcttagagtaagttggttggtaaaaaatagttagagcaatgcaatcaattacttattaaaaaag |
41795741 |
T |
|
| Q |
406 |
aaatttggcatgtaaacttgctctttgttaatatggggaaatctttgcaaaatttaatggatgcatacatctaaaatagcatgatcaaaagaaagaagat |
505 |
Q |
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| T |
41795740 |
aaatttggcatgtaaacttgctctttgttaatatggggaaatctttgcaaaatttaatggatgcatacatctaaaatagcatgatcaaaagaaagaagat |
41795641 |
T |
|
| Q |
506 |
catggtt--ttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttctaatgaaatcttcaaattttttg |
603 |
Q |
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| T |
41795640 |
catggttgctgtttacttaaatcaaaccatgactaaatgccgtctagcatcaattcttagatcttctttcatctttctaatgaaatcttcgaattttttg |
41795541 |
T |
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| Q |
604 |
tttaactcttcagtacttagcacac |
628 |
Q |
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| T |
41795540 |
tttaactcttctgtacttaacacac |
41795516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 400 - 630
Target Start/End: Complemental strand, 41760968 - 41760725
Alignment:
| Q |
400 |
aaaaagaaatttggcatgtaaacttgctctttgttaatatggggaaatctttgcaaaatttaatggatgcatacatctaa-------aata------gca |
486 |
Q |
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| T |
41760968 |
aaaaagaaatttggcatggaaacttgctctttgttaatatctg-aaatctttgcaaaatttaatggatgcatacatctaatttctaaaatacaagaagca |
41760870 |
T |
|
| Q |
487 |
tgatcaaaagaaagaagatcatgg-ttttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttctaatg |
585 |
Q |
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| T |
41760869 |
tgatcaaaagaaagaagatcatgggttttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttctaatg |
41760770 |
T |
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| Q |
586 |
aaatcttcaaattttttgtttaactcttcagtacttagcacacaa |
630 |
Q |
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| T |
41760769 |
aaatcttcaaattttttgtttaactcttctgtacttagcacacaa |
41760725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 808 - 904
Target Start/End: Complemental strand, 41795351 - 41795255
Alignment:
| Q |
808 |
ataaatattatcttttcaaccttttcttgtacttctttttcctctactgcagcactgtgttcatctgcgtcattagttctcatctcaacttctctct |
904 |
Q |
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| T |
41795351 |
ataaatattatcttttcaaccttttcttgtacttctttttcctctactgcagcattgtgttcatctgcttcattagttctcatctcaacttctctct |
41795255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 699 - 733
Target Start/End: Complemental strand, 41760656 - 41760622
Alignment:
| Q |
699 |
aattagaatgtaatcaatttccgacaatttatctc |
733 |
Q |
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| T |
41760656 |
aattagaatgtaatcaatttccgacaatttatctc |
41760622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 626
Target Start/End: Complemental strand, 23507455 - 23507400
Alignment:
| Q |
571 |
ttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcac |
626 |
Q |
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| T |
23507455 |
ttcatctttttaatgaagtcatcaaattttttgttcaactcctcagtgcttagcac |
23507400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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