View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5502-Insertion-6 (Length: 870)

Name: NF5502-Insertion-6
Description: NF5502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5502-Insertion-6
NF5502-Insertion-6
[»] chr5 (18 HSPs)
chr5 (8-867)||(1162356-1163214)
chr5 (635-771)||(1850468-1850604)
chr5 (396-611)||(39400763-39400982)
chr5 (414-579)||(40419289-40419460)
chr5 (8-190)||(40418896-40419069)
chr5 (282-480)||(40412251-40412460)
chr5 (554-861)||(40412480-40412778)
chr5 (613-690)||(40419467-40419544)
chr5 (775-834)||(1850781-1850840)
chr5 (721-861)||(39880558-39880689)
chr5 (567-760)||(38988459-38988658)
chr5 (269-363)||(39400652-39400746)
chr5 (8-62)||(39880441-39880495)
chr5 (823-867)||(40419663-40419707)
chr5 (28-62)||(3300113-3300147)
chr5 (28-62)||(3393006-3393040)
chr5 (284-329)||(38988414-38988459)
chr5 (121-158)||(39400512-39400549)
[»] chr4 (4 HSPs)
chr4 (392-568)||(25911177-25911356)
chr4 (56-238)||(25911510-25911683)
chr4 (616-736)||(25911041-25911161)
chr4 (8-57)||(25911700-25911749)
[»] chr8 (1 HSPs)
chr8 (635-725)||(34401891-34401981)
[»] chr6 (1 HSPs)
chr6 (481-543)||(16727438-16727500)


Alignment Details
Target: chr5 (Bit Score: 820; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 820; E-Value: 0
Query Start/End: Original strand, 8 - 867
Target Start/End: Complemental strand, 1163214 - 1162356
Alignment:
Q  8 cttcccaaaccatggctgtcattatattcggcatataaagttcctttcaccatttactttcctgtcttccatgcatgtgttacactaggaatcttacaga 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163214 cttcccaaaccatgcctgtcattatattcggcatataaagttcctttcaccatttactttcctgtcttccatgcatgtgttacactaggaatcttacaga 1163115  T
Q  108 tgcaggtaagcagctaatatgcattggtttgatcttctctgctatgtaaatatctgtttcgtaaattttaaacagttgtttgtttgtggtatagtactac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163114 tgcaggtaagcagctaatatgcattggtttgatcttctctgctatgtaaatatctgtttcgtaaattttaaacagttgtttgtttgtggtatagtactac 1163015  T
Q  208 cttttacatgggattcattcatgtgctggatggatgtaagtattttgtggatctgtttttattatattgtttgttataaacaaatagttcactccatttg 307  Q
    |||||| |||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163014 cttttatatgg-attcgttcatgtgctggatggatgtaaatattttgtggatctgtttttattatattgtttgttataaacaaatagttcactccatttg 1162916  T
Q  308 tacttgagttttgattaatctaatacctatcgtacgaagcaaaactggcaaaccatctttataattattaggagattttcaactctacataaatagatta 407  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1162915 tacttgagttttgattaatctaatacctatcatacgaagcaaaactggcaaactatctttataattattaggagattttcaactctacataaatagatta 1162816  T
Q  408 aagtatagtgtggctgcttctcatatgcgtcctttctttcatttgctgaagcatggtgccaattgctactgttagaatcaaactcatggatcaaggtatt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162815 aagtatagtgtggctgcttctcatatgcgtcctttctttcatttgctgaagcatggtgccaattgctactgttagaatcaaactcatggatcaaggtatt 1162716  T
Q  508 gactactttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggccgcgaagaatctctttaagataagcaac 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1162715 gactactttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggccgcgaagaatctctttaagataaacaac 1162616  T
Q  608 ttgtttttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattatag 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162615 ttgtttttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattatag 1162516  T
Q  708 gctactcaagttgttacaacacgagcttgaaaattattgtctcaaaccccttctcaatctctctatgcaatcctgtctcaaagccttagggatgcagatt 807  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1162515 gctactcaagttgttacaacacgagcttgaaaattattgtctcaaaccccttctcaatctctctatacaatcctgtctcaaagccttagggatgcagatt 1162416  T
Q  808 ttgcagcaaaactggctggtttatacaactcttgcaatcaaacatggctagttttacttc 867  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1162415 ttgcagcaaaactggctggtttatacaactcttgcaatcaaacatggctagttttacttc 1162356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 635 - 771
Target Start/End: Original strand, 1850468 - 1850604
Alignment:
Q  635 tcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactcaagttgttacaacacgagct 734  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850468 tcaattatgagattgctgaatttgctgattgcatttagatgacattttgagatgttcagttatatcattataggctactcaagttgttacaacacgagct 1850567  T
Q  735 tgaaaattattgtctcaaaccccttctcaatctctct 771  Q
    |||||||||||||||||||||||||| ||||||||||    
T  1850568 tgaaaattattgtctcaaaccccttcgcaatctctct 1850604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 396 - 611
Target Start/End: Original strand, 39400763 - 39400982
Alignment:
Q  396 ataaatagattaaagtatagtgtggctgcttctcatatgcgtcctttctttcatttgctgaagcatggtgccaattgctactgtta---gaatcaaactc 492  Q
    |||||||| | ||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||| |||| ||||| ||||    |||||||||      
T  39400763 ataaatagttgaaagtattgtgtggctgcttctcacatgcctcctttctttcatttgctgaagcatggttccaactgctaatgttgtgtgaatcaaaccg 39400862  T
Q  493 atggatcaaggtattgactactttt-tctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggccgcgaagaatct 591  Q
    | |||| ||||||||||||  |||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||    
T  39400863 acggattaaggtattgactttttttttctgtagtcaaagtcatgctcaaaagtagtttgtgtattttataaaggaactagttcctggctgcaaagaatct 39400962  T
Q  592 ctttaagataagcaacttgt 611  Q
     |||||||||| ||||||||    
T  39400963 ttttaagataaccaacttgt 39400982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 414 - 579
Target Start/End: Original strand, 40419289 - 40419460
Alignment:
Q  414 agtgtggctgcttctcatatgcgtcctttctttcatttgctgaagcatggtgc---caattgctactgtt---agaatcaaactcatggatcaaggtatt 507  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||||||||||||    ||| |||| |||||   ||||||||||  | |||||||||||||    
T  40419289 agtgttgctgcttctaatatgcgtcctttctttcattcgctgaagcatggtggtggcaactgcttctgttgtgagaatcaaacggacggatcaaggtatt 40419388  T
Q  508 gactactttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggc 579  Q
    |||| ||||||||||||| || |||||||||||||| |||||||||||| ||||||||||||||||| ||||    
T  40419389 gacttctttttctgtagttaaagtcatgctcaaaagtagtttgtgcattgtataaaggaactagttcttggc 40419460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 40418896 - 40419069
Alignment:
Q  8 cttcccaaaccatggctgtcattatattcggcatataaagttcctttcaccatttactttcctgtcttccatgcatgtgttacactaggaatcttacaga 107  Q
    |||| ||||||||| |||||||||||||||||||| |||||||||||||||||||     | |||||||||||    || |||||||| || ||||||||    
T  40418896 cttcacaaaccatgcctgtcattatattcggcataaaaagttcctttcaccattt-----catgtcttccatg----tggtacactagaaagcttacaga 40418986  T
Q  108 tgcaggtaagcagctaatatgcattggtttgatcttctctgctatgtaaatatctgtttcgtaaattttaaacagttgtttgt 190  Q
    | ||  ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| || ||||||| |||||    
T  40418987 tacaattaagcagctaatatgcattggttcgatcttctctgctacgtaaatatctgtttcataaatctttaacagttatttgt 40419069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 282 - 480
Target Start/End: Original strand, 40412251 - 40412460
Alignment:
Q  282 tataaacaaatagttcactccatttgtacttgagttttgattaatctaatacctatcgtacgaagcaaaactggcaaaccatctttataattattaggag 381  Q
    |||||| ||||||||||||| |||||| |||||||| ||||||||||| ||  ||||||| |||||||||||||||||||||||      ||||||||||    
T  40412251 tataaataaatagttcactctatttgttcttgagttctgattaatctactaagtatcgtaagaagcaaaactggcaaaccatct------ttattaggag 40412344  T
Q  382 att--------------ttcaactctacataaatagattaaagtatagtgtggctgcttctcatatgcgtcctttctttcatttgctgaagcat---ggt 464  Q
    |||              || |||| ||||||||||| | ||||||||||||||||||||||||||   ||||||||||||||||||||||||||   |||    
T  40412345 attaatctactactctatttaactttacataaatagttgaaagtatagtgtggctgcttctcatacatgtcctttctttcatttgctgaagcatggcggt 40412444  T
Q  465 gccaattgctactgtt 480  Q
    ||||| ||||||||||    
T  40412445 gccaactgctactgtt 40412460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 554 - 861
Target Start/End: Original strand, 40412480 - 40412778
Alignment:
Q  554 attttataaaggaactagttcctggccgcgaagaatctcttt--aagataagcaacttg-tttttctcatgatacatttgtctgtcaattatgagattgc 650  Q
    ||||||||||||||||||||||||||  | ||||||||||||  ||||||||||||||| |||||||  |||||||||||||  ||||||||||||        
T  40412480 attttataaaggaactagttcctggctactaagaatctctttaaaagataagcaacttgttttttcttgtgatacatttgtccatcaattatgaga---- 40412575  T
Q  651 tgaatttgctgattgcatttatacgacattttgagatgttcagtt------atatcattataggctactcaagttg-------ttacaacacgagcttga 737  Q
         ||||||||| || ||||| || ||| |||| |||||||||      |||||||||||||||| | ||||||       |||||||| ||||||||    
T  40412576 -----ttgctgattacaattatatgatattctgaggtgttcagttatatcaatatcattataggctattgaagttgttgcaacttacaacatgagcttga 40412670  T
Q  738 aaattattgtctcaaaccccttctcaatctctctatgcaatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttatacaact 837  Q
    |||||||||||| ||||||| |||||     | ||   ||     ||||||||||||||||||| ||||||||||||||||    |||||||||||||||    
T  40412671 aaattattgtcttaaacccc-tctca---ggttta---aa-----tctcaaagccttagggatgtagattttgcagcaaaa----ctggtttatacaact 40412754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 613 - 690
Target Start/End: Original strand, 40419467 - 40419544
Alignment:
Q  613 tttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgtt 690  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  40419467 tttctcatgatacatttgtccatcaattatgagattgctgaatttgctgattgcaattatacgacattttgaggtgtt 40419544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 775 - 834
Target Start/End: Original strand, 1850781 - 1850840
Alignment:
Q  775 caatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttataca 834  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1850781 caatcctgtctcaaagccttagggatgcagattttgcagcaaaactggctggtttataca 1850840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 721 - 861
Target Start/End: Original strand, 39880558 - 39880689
Alignment:
Q  721 ttacaacacgagcttgaaaattattgtctcaaaccccttctcaatctctctatgcaatcctgtctcaaagccttagggatgcagattttgcagcaaaact 820  Q
    |||||||| |||||||||||||||||||| |||||||||| |||||||    |  ||||     ||||||||||||||||| ||||||||||||||||      
T  39880558 ttacaacatgagcttgaaaattattgtcttaaaccccttcacaatctcaggtttaaatc-----tcaaagccttagggatgtagattttgcagcaaaa-- 39880650  T
Q  821 ggctggtttatacaactcttgcaatcaaacatggctagttt 861  Q
      ||||||||||||||||||||| |||||||||||||||||    
T  39880651 --ctggtttatacaactcttgcattcaaacatggctagttt 39880689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 567 - 760
Target Start/End: Original strand, 38988459 - 38988658
Alignment:
Q  567 actagttcctggccgcgaagaatctctttaa--gataagcaacttgtttttctcatgatacatttgtctgtcaattatgagattgctgaatttgctgatt 664  Q
    |||||||||||||  ||||||||||||||||  ||||||||||||||||||||  |||||||||||||  ||||||||||||          ||||||||    
T  38988459 actagttcctggctacgaagaatctctttaaaagataagcaacttgtttttcttgtgatacatttgtccatcaattatgaga---------atgctgatt 38988549  T
Q  665 gcatttatacgacattttgagatgttcagtt------atatcattataggctactcaagttg-------ttacaacacgagcttgaaaattattgtctca 751  Q
    ||| ||||| |||||| |||| |||||||||      |||||||||||||||| | ||||||       |||||||| ||||||||| |||||||||| |    
T  38988550 gcaattatatgacattatgaggtgttcagttatatcaatatcattataggctattgaagttgttacaacttacaacatgagcttgaacattattgtctta 38988649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 269 - 363
Target Start/End: Original strand, 39400652 - 39400746
Alignment:
Q  269 ttatattgtttgttataaacaaatagttcactccatttgtacttgagttttgattaatctaatacctatcgtacgaagcaaaactggcaaaccat 363  Q
    ||||||||||||||||||| |||| |||||||| |||| |||||||| ||||||||||||  | | ||| ||| ||||||||||| |||||||||    
T  39400652 ttatattgtttgttataaataaatggttcactctatttctacttgagctttgattaatctcttgcgtattgtaagaagcaaaactagcaaaccat 39400746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 39880441 - 39880495
Alignment:
Q  8 cttcccaaaccatggctgtcattatattcggcatataaagttcctttcaccattt 62  Q
    ||||||||| |||| |||||| ||||||||||||| |||||| ||||||||||||    
T  39880441 cttcccaaaacatgtctgtcaatatattcggcataaaaagttactttcaccattt 39880495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 823 - 867
Target Start/End: Original strand, 40419663 - 40419707
Alignment:
Q  823 ctggtttatacaactcttgcaatcaaacatggctagttttacttc 867  Q
    |||||||||| |||||||||| ||||| |||||||||||||||||    
T  40419663 ctggtttatataactcttgcactcaaatatggctagttttacttc 40419707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 3300113 - 3300147
Alignment:
Q  28 attatattcggcatataaagttcctttcaccattt 62  Q
    ||||||||||||||||||||| |||||||||||||    
T  3300113 attatattcggcatataaagtacctttcaccattt 3300147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 3393006 - 3393040
Alignment:
Q  28 attatattcggcatataaagttcctttcaccattt 62  Q
    ||||||||||||||||||||| |||||||||||||    
T  3393006 attatattcggcatataaagtacctttcaccattt 3393040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 329
Target Start/End: Original strand, 38988414 - 38988459
Alignment:
Q  284 taaacaaatagttcactccatttgtacttgagttttgattaatcta 329  Q
    |||| ||||||||||||| |||||| |||||||| |||||||||||    
T  38988414 taaataaatagttcactctatttgttcttgagttctgattaatcta 38988459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 39400512 - 39400549
Alignment:
Q  121 ctaatatgcattggtttgatcttctctgctatgtaaat 158  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  39400512 ctaatatgcattggtttgattttctatgctatgtaaat 39400549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 1e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 392 - 568
Target Start/End: Complemental strand, 25911356 - 25911177
Alignment:
Q  392 ctacataaatagattaaagtatagtgtggctgcttctcatatgcgtcctttctttcatttgctgaagcatggtgccaattgctactgtt---agaatcaa 488  Q
    |||||||||||  | |||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||    ||||||||    
T  25911356 ctacataaataattgaaagtatagtctggttgcttctcagatgcgtcctttctttcatttgctgaagcatggtgctaactgctactgtagtgagaatcaa 25911257  T
Q  489 actcatggatcaaggtattgactactttttctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaac 568  Q
     |  | |||||||||| |||||| ||||||||||||  || |||||||||||||| | ||||||||||||||||||||||    
T  25911256 tcgtacggatcaaggttttgacttctttttctgtagataaagtcatgctcaaaagtaatttgtgcattttataaaggaac 25911177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 56 - 238
Target Start/End: Complemental strand, 25911683 - 25911510
Alignment:
Q  56 accatttactttcctgtcttccatgcatgtgttacactaggaatcttacagatgcaggtaagcagctaatatgcattggtttgatcttctctgctatgta 155  Q
    |||||||||||||||||||||||||    || |||||||| |||||||||||  ||| |||||||||||||| |||||||||||||||||||||||||||    
T  25911683 accatttactttcctgtcttccatg----tggtacactagaaatcttacagacacagttaagcagctaatatacattggtttgatcttctctgctatgta 25911588  T
Q  156 aatatctgtttcgtaaattttaaacagttgtttgtttgtggtatagtactaccttttacatgggattcattcatgtgctggat 238  Q
    |||||||||||| ||||| || |||||||||    |||| |||| ||| ||||||||| || |||||||||| ||||||||||    
T  25911587 aatatctgtttcataaatctttaacagttgt----ttgtagtatcgtattaccttttatat-ggattcattcctgtgctggat 25911510  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 616 - 736
Target Start/End: Complemental strand, 25911161 - 25911041
Alignment:
Q  616 ctcatgatacatttgtctgtcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactca 715  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||| ||||||||||||| |    
T  25911161 ctcatgatacatttgtccatcaattatgagattgctgaatttgctgattgcaattatatgatattttgaggtgttcagttatattattataggctactga 25911062  T
Q  716 agttgttacaacacgagcttg 736  Q
    |||||||||| || |||||||    
T  25911061 agttgttacaccatgagcttg 25911041  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 25911749 - 25911700
Alignment:
Q  8 cttcccaaaccatggctgtcattatattcggcatataaagttcctttcac 57  Q
    |||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  25911749 cttcccaaaccatgtctgtcattatattcggcataaaaaattcctttcac 25911700  T

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Target: chr8 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 635 - 725
Target Start/End: Original strand, 34401891 - 34401981
Alignment:
Q  635 tcaattatgagattgctgaatttgctgattgcatttatacgacattttgagatgttcagttatatcattataggctactcaagttgttaca 725  Q
    ||||||||||||| | |||| ||||||||| || ||||| |||||||||||  |||||||||||| ||||||||||||| |||||||||||    
T  34401891 tcaattatgagatgggtgaaattgctgatttcaattatatgacattttgaggagttcagttatattattataggctactgaagttgttaca 34401981  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 481 - 543
Target Start/End: Complemental strand, 16727500 - 16727438
Alignment:
Q  481 agaatcaaactcatggatcaaggtattgactactttttctgtagtcaacgtcatgctcaaaag 543  Q
    ||||||||||  | ||||||||||||||||| ||||||||||| | || |||||| |||||||    
T  16727500 agaatcaaacatacggatcaaggtattgacttctttttctgtacttaaagtcatggtcaaaag 16727438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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