View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5502-Insertion-7 (Length: 618)

Name: NF5502-Insertion-7
Description: NF5502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5502-Insertion-7
NF5502-Insertion-7
[»] chr8 (1 HSPs)
chr8 (8-618)||(38123801-38124411)


Alignment Details
Target: chr8 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 8 - 618
Target Start/End: Complemental strand, 38124411 - 38123801
Alignment:
Q  8 ctaacaatggaggaatcgtgagtttgcgtttcccacctaagtaaaaatagtaaataaatttagaaagtgtcatatactatgaacaatgaaacttaaacac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38124411 ctaacaatggaggaatcgtgagtttgcgtttcccacctaagtaaaaatagtaaataaatttagaaagtgtcatatactatgaacaatgaaacttaaacac 38124312  T
Q  108 ttcaaattaaatttaatacctatccgcattggaggtactccttcaccccctaaaattccctgatccaatccccttattacctgaaaatcccattgaacct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38124311 ttcaaattaaatttaatacctatccgcattggaggtactccttcaccccctaaaattccctgatccaatccccttattacctgaaaatcccattgaacct 38124212  T
Q  208 tataattacaaactcatcaaaaatacatagccaaatcaatttaactgtaagaaaaacttatccaccttgccaacaccaatacgcatagttaaaggcctag 307  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38124211 tataattacaaactcataaaaaatacatagccaaatcaatttaactgtaagaaaaacttatccaccttgccaacaccaatacgcatagttaaaggcctag 38124112  T
Q  308 cacgtttataactactatcaaatactattccatcggcgaatctagctgtatagtgaatctgcaatgtataataataacaatatcaatcgttaattaacta 407  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38124111 cacgtttataactactatcaaatactattccatcggcgaacctagctgtatagtgaatctgcaatgtataataataacaatatcaatcgttaattaacta 38124012  T
Q  408 attaagtttttgcatatagaaaatgagtaaaagagtaataaacagcttacatcaataagctctcctaaaggagcttcatcaccaaaaccctcaacataat 507  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38124011 attaaatttttgcatatagaaaatgagtaaaagagtaataaacagcttacatcaataagctctcctaaaggagcttcatcaccaaaaccctcaacataat 38123912  T
Q  508 cacagtaaccaagcccagatttaacataattaagctcacacattggttctcccacagtagcatagtattcaattctcgttgcatctgcatccaacgctgt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38123911 cacagtaaccaagcccagatttaacataattaagctcacacattggttctcccacagtagcatagtattcaattctcgttgcatctgcatccaacgctgt 38123812  T
Q  608 taaccccatta 618  Q
    |||||||||||    
T  38123811 taaccccatta 38123801  T

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