View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5502-Insertion-8 (Length: 350)

Name: NF5502-Insertion-8
Description: NF5502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5502-Insertion-8
NF5502-Insertion-8
[»] chr5 (1 HSPs)
chr5 (7-346)||(30186079-30186433)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 346
Target Start/End: Original strand, 30186079 - 30186433
Alignment:
Q  7 aactgtcacttcttttctctcattgggtgagaacaagtcgctatagggatgaaagtgtgaccctgattttccaggacttctactccactgaaacattaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30186079 aactgtcacttcttttctctcattgggtgagaacaagtcgctatagggatgaaagtgtgaccctgattttccaggacttctactccactgaaacattaac 30186178  T
Q  107 attttcacattagaatatg--nnnnnnnnttaaattctacaag-------------taataacaatatttttattattttaaataat---nnnnnnnctc 188  Q
    |||||||||||||||||||          ||| ||||||||||             ||| |||||||||| ||||||||||||||||          |||    
T  30186179 attttcacattagaatatgaaaaaaaaaattagattctacaagtatattatcatgataagaacaatatttgtattattttaaataataaaaaaaaaactc 30186278  T
Q  189 accaaataaattggatatgcaaacaatggtaaaggcactgagaatctcacaaattttgtcatgwtgtctagactcttgtaaaccttttctgtcaactaag 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  30186279 accaaataaattggatatgcaaacaatggtaaaggcactgagaatctcacaaattttgtcatgttgtctagactgttgtaaaccttttctgtcaactaag 30186378  T
Q  289 aaaatgacacnnnnnnntattatgaacaaaactcatcaaatgaaagttacttcrtttt 346  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||| ||||    
T  30186379 aaaatgacac---aaaatattatgaacaaaactcatcaaatgaaagttacttcatttt 30186433  T

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