View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5502_high_1 (Length: 235)
Name: NF5502_high_1
Description: NF5502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5502_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 7716017 - 7715800
Alignment:
| Q |
17 |
aatagcattaaaaacattacaatnnnnnnncagatgatttatcgattcaaaagcactacagccacttacacaaaacttcgatcatgattgatgatacctc |
116 |
Q |
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| T |
7716017 |
aatagcaataaaaacattacaatcaaaaaacagatgatttatcgattcaaagacactacaaccacttacacaaaacttcgatcatgattgatgatatctc |
7715918 |
T |
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| Q |
117 |
gtctaaacaaattatccttgataaaaagctgattacgtaagaaccgccaaacaaataaagataccttaaatggagcatcattataccaagttaaatctaa |
216 |
Q |
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| T |
7715917 |
gtctaaacaaattatccttgattaaaagccaattacgtaagaacagccaaacaaataaagataccttaaatgaagcatcattataccaagttaaatctaa |
7715818 |
T |
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| Q |
217 |
aatattttaaaggacact |
234 |
Q |
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| T |
7715817 |
aacatgtgaaaggacact |
7715800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 7729916 - 7729745
Alignment:
| Q |
47 |
cagatgatttatcgattcaaaagcactacagccacttacacaaaacttcgatcatgattgatgatacctcgtctaaacaaattatccttgataaaaagct |
146 |
Q |
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| T |
7729916 |
cagatgatttgtcaattcaaaggcactacaaccacttacacaaaactgcgatcgtgattgatgatacctcatctaaataaggtatccttgataataaacc |
7729817 |
T |
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| Q |
147 |
gattacgtaagaaccgccaaacaaataaagataccttaaatggagcatcattataccaagttaaatctaaaa |
218 |
Q |
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| T |
7729816 |
gattatgtaaaaaacaccaaacaaataaagataccttaaatggagcctccttataccaaattgaatctaaaa |
7729745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 7723758 - 7723665
Alignment:
| Q |
47 |
cagatgatttatcgattcaaaagcactacagccacttacacaaaacttcgatcatgattgatgatacctcgtctaaacaaattatccttgataa |
140 |
Q |
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| T |
7723758 |
cagatgatttgtccattcaaagacgctacaaccacttacacaaaattgtgatcatgattgatgatacctcgtctaaacaagttatccttgataa |
7723665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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