View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5502_low_1 (Length: 348)
Name: NF5502_low_1
Description: NF5502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5502_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 15899861 - 15899547
Alignment:
| Q |
17 |
aatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcaattcttcaatattatcttcaatctttttaagcaaaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15899861 |
aatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcaaatcttcaatattatcttcaatctttttaagcaaaa |
15899762 |
T |
|
| Q |
117 |
gcttacatgcttcgctatcatctttatcaannnnnnngccataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatt |
216 |
Q |
| |
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|| ||||||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15899761 |
gcatacatgcttcgttagcatctttatcaatttttttgccataatcagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatt |
15899662 |
T |
|
| Q |
217 |
tttagcattgtgatgaataggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15899661 |
tttagcattgtgatgaataggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatc |
15899562 |
T |
|
| Q |
317 |
ttaggaatcaaaatt |
331 |
Q |
| |
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|||||||||||||| |
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| T |
15899561 |
ctaggaatcaaaatt |
15899547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 15920889 - 15920575
Alignment:
| Q |
17 |
aatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcaattcttcaatattatcttcaatctttttaagcaaaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
15920889 |
aatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcaaatattcaatattatcttcaatctttttaagcaaaa |
15920790 |
T |
|
| Q |
117 |
gcttacatgcttcgctatcatctttatcaannnnnnngccataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatt |
216 |
Q |
| |
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|| ||||||||||| || |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15920789 |
gcatacatgcttcgttaacatctttatcaatttttttgccataataagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatt |
15920690 |
T |
|
| Q |
217 |
tttagcattgtgatgaataggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15920689 |
tttagcattgtgatgaataggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatc |
15920590 |
T |
|
| Q |
317 |
ttaggaatcaaaatt |
331 |
Q |
| |
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|||||||||||||| |
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| T |
15920589 |
ctaggaatcaaaatt |
15920575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 15874208 - 15874522
Alignment:
| Q |
17 |
aatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcaattcttcaatattatcttcaatctttttaagcaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
15874208 |
aatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcacattttcaatattatcttcaatctttttaagcaaaa |
15874307 |
T |
|
| Q |
117 |
gcttacatgcttcgctatcatctttatcaannnnnnngccataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatt |
216 |
Q |
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|||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15874308 |
gcttacatgcttcgttatcatctttatcaatttttttggcataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttcagatt |
15874407 |
T |
|
| Q |
217 |
tttagcattgtgatgaataggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaaccctttggatc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15874408 |
tttagcattgtgatgaataggaccaaatgatataatctttggtgaacaatacttataaaatctttcattttgccgcaaaaatattggaaccctttggatc |
15874507 |
T |
|
| Q |
317 |
ttaggaatcaaaatt |
331 |
Q |
| |
|
||||||||| ||||| |
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| T |
15874508 |
ttaggaatcgaaatt |
15874522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 14060618 - 14060930
Alignment:
| Q |
12 |
cgaagaatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcaattcttcaatattatcttcaatctttttaag |
111 |
Q |
| |
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|||| |||||||||||||||||||| |||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
14060618 |
cgaacaatatccaagcaagatcattgtcattgaatccttcaattgcatcttcagtgaacatgttcttcaattcttcaatattatcttcaatcttgttaag |
14060717 |
T |
|
| Q |
112 |
caaaagcttacatgcttcgctatcatctttatcaannnnnnngccataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttc |
211 |
Q |
| |
|
|||||| || ||||||| | || |||||| || | |||||| | ||| |||| | || ||||||||||| ||||| |||||||||||||| |
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| T |
14060718 |
caaaagtttgcatgcttggttaccatcttgattgatttctttgccatattcctcaagaaatgtagaggtccatagaagtttgtactgctctccttcttta |
14060817 |
T |
|
| Q |
212 |
agatttttagcattgtgatgaataggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaacccttt |
311 |
Q |
| |
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||| |||| ||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | |||||||||| |
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| T |
14060818 |
agacatttattattgtgatggatcggaccaaatgatataatctttggtgagcaatacttataaaatctttcattttgtcgcaaaaacttaggaacccttt |
14060917 |
T |
|
| Q |
312 |
ggatcttaggaat |
324 |
Q |
| |
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| ||||||||||| |
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| T |
14060918 |
gaatcttaggaat |
14060930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 14049247 - 14049545
Alignment:
| Q |
12 |
cgaagaatatccaagcaagatcattatcattgtagccttcaattgcatcctcagtgaacatattcttcaattcttcaatattatcttcaatctttttaag |
111 |
Q |
| |
|
|||| ||||||||||||||||| || |||||| | |||||||||||||| || |||||||| |||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
14049247 |
cgaacaatatccaagcaagatcgttgtcattgaatccttcaattgcatcttccgtgaacatgttcttcaattctacaatattatcttcaatcttgttaag |
14049346 |
T |
|
| Q |
112 |
caaaagcttacatgcttcgctatcatctttatcaannnnnnngccataattagcaacaaatattgatgtccatagaagcttgtaatgctctccttctttc |
211 |
Q |
| |
|
|||||| || || |||| | |||||| || | |||||| | |||||||| | |||||||| |||||||||||||||||||||||||| |
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| T |
14049347 |
caaaagtttgcaggcttggtggccatcttgattgatttgtttgccatattcctcaacaaatgtagatgtccacagaagcttgtaatgctctccttcttta |
14049446 |
T |
|
| Q |
212 |
agatttttagcattgtgatgaataggaccaaatgatataatctttggtgtacaatacttataaaatctttcattttgccgcaaaaacattggaacccttt |
311 |
Q |
| |
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||| || | ||||||||| || ||||||||||| || ||||||||||||||||||||||||| | ||||||| |||||||||||| |
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| T |
14049447 |
agacattcactattgtgatggatgggaccaaatgagat--------------aatacttataaaatctttcattttgtctcaaaaactttggaacccttt |
14049532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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