View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5503-Insertion-1 (Length: 735)
Name: NF5503-Insertion-1
Description: NF5503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5503-Insertion-1 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0013 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 8 - 735
Target Start/End: Complemental strand, 40476 - 39747
Alignment:
| Q |
8 |
aaagagataagttagacaccggggagagacagaaacacccaactagattgctacgaaattgaaactctcatcctctactgcgtactcannnnnnnnnnnn |
107 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40476 |
aaagagataagttagacatcggggagagacagaaacacccaactagattgtcacgaaattgaaactctcatcctctactgcgtactcaacacacacacac |
40377 |
T |
|
| Q |
108 |
nnn--tatatttaacaagttatagttaggtaatcctagttgattctttacgaattcagatctcaaaaagttagggagctatgggaaccaaacatatgcag |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40376 |
acacatatatttaacaagttatagttaggtaatcctagttgattctttacgaattcagatctcaaaaagttagggagctatgggaaccaaacatatgcag |
40277 |
T |
|
| Q |
206 |
acagagctaagccaaagttagttaacatatatgcagaagtgtttccctctatatatannnnnnnnnnnnaaaccaaaattttcttgttctttacactttg |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
40276 |
acagagctaagccaaagttagttaacatatatgcacaagtgtttccctctatatatatgtgtgtgtgtgaaaccaaaattttcatgttctttacactttg |
40177 |
T |
|
| Q |
306 |
taaacagttaaatgatctgtttcttagggaccaaggaaccatatgatcagccctaaaagccagaataacttaatgtgattatgtctctaaccacaaattg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
40176 |
taaacagttaaatgatctgtttcttagggaccaaggaaccatatgatcagccctaaaagccagaagaacttaatgtgattctgtctctaaccacaaattg |
40077 |
T |
|
| Q |
406 |
ttccaattcttctcaactgaaatctcaatagccttcgttactctagagatttgacctatgaaagtagtttcagtatttagttttgtgcaaaacagcaatg |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40076 |
ttccaattcttctcaactgaaatctcaatagccttcgttactctagagatttgacctatgaaagtagtttcagtatttagttttgtgcaaaacagcaatg |
39977 |
T |
|
| Q |
506 |
acgaaatgttgtttgttctctattttgacagcagctgcagattgataacatacaaaaatctctttccttcaacttcttataagtggaaaccctatcttgc |
605 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39976 |
acgaaatgttgtttgttctctattctgacagcagctgcagattgataacatacaaaaatctctttccttcaacttcttataagtggaaaccctatcttgc |
39877 |
T |
|
| Q |
606 |
attatcctccaagctagcaaggatttggtgggaggaatatcggacgaccaaacattctttgtccaatgaattttcggaccaataggagctctgaatcggt |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |
|
|
| T |
39876 |
attatcctccaagctagcaaggatttggtgggaggaatatcgaaggaccaaacattctttgtccaatgaattttctgaccaataggagctttgaagcggt |
39777 |
T |
|
| Q |
706 |
aagcttctctaaaggataaatcaccattgt |
735 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39776 |
aagcttctctaaaggataaatcaccattgt |
39747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 516 - 728
Target Start/End: Original strand, 10023812 - 10024023
Alignment:
| Q |
516 |
gtttgttctctattttgacagcagctgcagattgataacatacaaaaatctctttccttcaacttcttataagtggaaaccctatcttgcattatcctcc |
615 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||| ||| || || || | ||||| |||| || |||| || ||||| ||||||| |||||| ||||||| |
|
|
| T |
10023812 |
gtttcttcactattttggcagcagctgcagactgagggcaaactaacacctctt-cctttaatttctcatcagtggggaccctatattgcataatcctcc |
10023910 |
T |
|
| Q |
616 |
aagctagcaaggatttggtgggaggaatatcggacgaccaaacattctttgtccaatgaattttcggaccaataggagctctgaatcggtaagcttctct |
715 |
Q |
| |
|
|| ||||||||||||| | ||||| ||||| || ||||||||||||||||| || | ||||||| |||| |||||||| |||| |||||||||| | |
|
|
| T |
10023911 |
aacctagcaaggatttattaggagggatatcagatgaccaaacattctttgttcatttaattttctgacctataggagccttgaagatgtaagcttcttt |
10024010 |
T |
|
| Q |
716 |
aaaggataaatca |
728 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
10024011 |
aaaagataaatca |
10024023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 255
Target Start/End: Original strand, 10022417 - 10022555
Alignment:
| Q |
125 |
tatagttaggtaatcctagttgattctttacgaattcagatctcaaaaagttagggag-ct-------atgggaaccaaacatatgcagacagagctaag |
216 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||||||| ||||||||| |||||| || | ||||||||||||||| ||||| |||||| |
|
|
| T |
10022417 |
tatagttaggtaatcttaactgattctttacaaattcagatttcaaaaagtcagggagactgggagagaatggaaccaaacatatgaagacatagctaat |
10022516 |
T |
|
| Q |
217 |
ccaaagttagttaacatatatgcagaagtgtttccctct |
255 |
Q |
| |
|
|||||| ||| ||||| | |||| |||||||||||||| |
|
|
| T |
10022517 |
ccaaagatagctaacaagtctgcacaagtgtttccctct |
10022555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University