View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5505-Insertion-1 (Length: 1100)
Name: NF5505-Insertion-1
Description: NF5505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5505-Insertion-1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 750; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 116 - 1077
Target Start/End: Original strand, 35490427 - 35491381
Alignment:
| Q |
116 |
tgttatttaccgcaaaggtttttatagcgaatgcatcccgaattactattcaccgttacaatcttctcatggccggaaaacacgggcagttgtggggtaa |
215 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35490427 |
tgttatttaacgcgaaggtttttatagcgaatgcatcctgaattactgttcaccatgacaatcttctcatggccggaaaacatgggcagttgtggggtaa |
35490526 |
T |
|
| Q |
216 |
gagttttggtcaaatttcaaatata--gtgacnnnnnnntccttcgggacaatctcgtgattttgatttcgttgtattgatgatttccatttaaaaatat |
313 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
35490527 |
gagttttggtcaaatttcaaatatatagtgacaaaaaaatccttccggacaatctcgtgattttgatttcgttgtattaatcatttccatttaaaaatat |
35490626 |
T |
|
| Q |
314 |
agtgatggaacctctttgagttggccttgtggtgttggtttaggatattagagaatatcaaagtatgagattcgattcttcgagtggtgcaaatttcggt |
413 |
Q |
| |
|
||| |||||||||||||||||||| |||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35490627 |
agtaatggaacctctttgagttggtcttg--------gtttgggatattagagaatatcaaaatatgagattcgattcttcgagtggtgcaaatttcggt |
35490718 |
T |
|
| Q |
414 |
gagctaatttggtttcttaagaaaatagtaacagaatgatttatatattggtcacttttattttcaggcaatatacacttttacttgttagtggcgacaa |
513 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35490719 |
gagctaattttgtttcttaagaaaatagtaacaaaatgatttatatattgctcgcttttattttcaggcaatatacacttttacttgttagtggcgacaa |
35490818 |
T |
|
| Q |
514 |
gactgggaggttaatgaaatatgataagtcaaccaaagaagtgaaggtcttattaagaggccttgcttttcctaatggtgttgctttaagcaaagatggt |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35490819 |
gactgggaggttaatgaaatatgataagtcaaccaaagaagtgaaggtcttattaagaggccttgcttttcctaatggtgttgctttaagcaaagatggt |
35490918 |
T |
|
| Q |
614 |
tcatttcttctggtagctgaaacctcaaattgcagaattcttcggctttggcttcatggaccaaaagctggtaaagtcagtacttttgttgatcttccag |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35490919 |
tcatttcttctggtagctgaaacctcaaattgcagaattcttcggctttggcttcatggaccaaaagctggtaaagtcagtacttttgttgatcttccag |
35491018 |
T |
|
| Q |
714 |
gttttcccgacgatataaggagaaattcatatggtcagttttgggttgctttgtattcatcagctgtaaagctgagtgatgaaggagaaatattagaaac |
813 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35491019 |
gttttcccgacaatataaggagaaattcatatggtcagttttgggttgctttgtattcatcagctgtaaagctgagtgatgaaggagaaatattagaaac |
35491118 |
T |
|
| Q |
814 |
cttagaagatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggt |
913 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35491119 |
cttagaagatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggt |
35491218 |
T |
|
| Q |
914 |
gtttatagtttatgagcatgcaatatattacgttagtgttgtacatgt-caatacaagggacaaatttatgtttttataggtatttatatgttcatttta |
1012 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||| | ||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
35491219 |
gtttatagtttatgagcatgcagtatattacgttagtg-tgtacatgtcccatacaagggacaattttatgtttttattagtatttatatgttcatttta |
35491317 |
T |
|
| Q |
1013 |
aaatattgtatgaaataatattaagtggtgtactgatgc-atgc-atatattattggcaattatatg |
1077 |
Q |
| |
|
|| ||||||||||||| ||||| ||| |||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
35491318 |
aagtattgtatgaaat-atatt-agt-gtgtactgatgcaatgcaatatattattggcaattatatg |
35491381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 450 - 766
Target Start/End: Original strand, 35503590 - 35503906
Alignment:
| Q |
450 |
tgatttatatattggtcacttttattttcaggcaatatacacttttacttgttagtggcgacaagactgggaggttaatgaaatatgataagtcaaccaa |
549 |
Q |
| |
|
|||||||||| ||||| |||||||||| |||||||| || ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35503590 |
tgatttatatgttggttacttttatttacaggcaatttatgcttgtacttcttagtggagacaagactgggaggttaatgaaatatgataagtcaacaaa |
35503689 |
T |
|
| Q |
550 |
agaagtgaaggtcttattaagaggccttgcttttcctaatggtgttgctttaagcaaagatggttcatttcttctggtagctgaaacctcaaattgcaga |
649 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| |
|
|
| T |
35503690 |
agaagtgaaagtcttattaagtggccttgcttttcccaatggtgttgctttaagcaaagatggttcatttcttctggtagctgaaacttcgacttgcaag |
35503789 |
T |
|
| Q |
650 |
attcttcggctttggcttcatggaccaaaagctggtaaagtcagtacttttgttgatcttccaggttttcccgacgatataaggagaaattcatatggtc |
749 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||||| ||||| |||||||| || ||||||||| ||||| ||| || |||||||||||||| | || | |
|
|
| T |
35503790 |
attctgaggctttggcttcgtggaccaaatgctggccaagtcgatacttttgctgttcttccaggctttccagacaatgtaaggagaaattcagaagggc |
35503889 |
T |
|
| Q |
750 |
agttttgggttgctttg |
766 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
35503890 |
aattttgggttgctttg |
35503906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 450 - 771
Target Start/End: Original strand, 35512222 - 35512543
Alignment:
| Q |
450 |
tgatttatatattggtcacttttattttcaggcaatatacacttttacttgttagtggcgacaagactgggaggttaatgaaatatgataagtcaaccaa |
549 |
Q |
| |
|
|||| ||||| |||||||||||| | | ||||||| ||| ||| || | ||||||| ||||||||||| ||||||||||||| |||||||| | || |
|
|
| T |
35512222 |
tgatctatatgttggtcacttttgtctgcaggcaacatatgcttgtaactcttagtggagacaagactggacggttaatgaaatacgataagtcgagtaa |
35512321 |
T |
|
| Q |
550 |
agaagtgaaggtcttattaagaggccttgcttttcctaatggtgttgctttaagcaaagatggttcatttcttctggtagctgaaacctcaaattgcaga |
649 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | | |||| |
|
|
| T |
35512322 |
agaagtaaaggtcttattaagtggccttttttttcccaatggtgttgctttaagcaaagatggttcatttcttctggtagccgaaacctcgattagcagg |
35512421 |
T |
|
| Q |
650 |
attcttcggctttggcttcatggaccaaaagctggtaaagtcagtacttttgttgatcttccaggttttcccgacgatataaggagaaattcatatggtc |
749 |
Q |
| |
|
||||| ||||||||||| ||||||| || | ||| || || |||||||| || ||||||||||||||||||| ||||||||||||||||| | || | |
|
|
| T |
35512422 |
attctgaggctttggcttaatggacctaatgttggccaaatcgatacttttgctgttcttccaggttttcccgacaatataaggagaaattcagaagggc |
35512521 |
T |
|
| Q |
750 |
agttttgggttgctttgtattc |
771 |
Q |
| |
|
| ||||||||||||||| |||| |
|
|
| T |
35512522 |
acttttgggttgctttgcattc |
35512543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 821 - 943
Target Start/End: Original strand, 35497344 - 35497466
Alignment:
| Q |
821 |
gatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttata |
920 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35497344 |
gatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttata |
35497443 |
T |
|
| Q |
921 |
gtttatgagcatgcaatatatta |
943 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
35497444 |
gtttatgagcatgcaatatatta |
35497466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 774 - 953
Target Start/End: Original strand, 35504028 - 35504207
Alignment:
| Q |
774 |
cagctgtaaagctgagtgatgaaggagaaatattagaaaccttagaagatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatgg |
873 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| | | ||||||| ||| |||||||| ||||| ||| |||||| | |||||||||||||| |
|
|
| T |
35504028 |
cagctataaagctgagtgatgaaggggaaatattagaagtcctggaagattgtgaagggaagaccttgaagttcatcagtgaaattgaagagaaagatgg |
35504127 |
T |
|
| Q |
874 |
aaaactttggattgcatcgatagtaacgccttatattggtgtttatagtttatgagcatgcaatatattacgttagtgtt |
953 |
Q |
| |
|
|||||||||||| ||||| | ||| |||||||||||||||||||| |||||||| |||||||||| || |||||||| |
|
|
| T |
35504128 |
aaaactttggatggcatcagtgttaatgccttatattggtgtttataatttatgagaatgcaatatactatattagtgtt |
35504207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 774 - 939
Target Start/End: Original strand, 35512660 - 35512825
Alignment:
| Q |
774 |
cagctgtaaagctgagtgatgaaggagaaatattagaaaccttagaagatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatgg |
873 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| |||||| | |||||| ||| |||||||| ||||| ||| ||||||||||||||||||||||| |
|
|
| T |
35512660 |
cagctataaagctgagtgatgaaggggaaataatagaaagtctggaagatcgtgaagggaagaccttgaagttcatcagtgaagtggaagagaaagatgg |
35512759 |
T |
|
| Q |
874 |
aaaactttggattgcatcgatagtaacgccttatattggtgtttatagtttatgagcatgcaatat |
939 |
Q |
| |
|
|||||||||||| || || | ||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35512760 |
aaaactttggatggcctctgtcttaatgccttatattggtgtttatagtttatgagaatgcaatat |
35512825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 435 - 538
Target Start/End: Original strand, 35497243 - 35497346
Alignment:
| Q |
435 |
aaaatagtaacagaatgatttatatattggtcacttttattttcaggcaatatacacttttacttgttagtggcgacaagactgggaggttaatgaaata |
534 |
Q |
| |
|
|||||||||| ||||||| ||||| |||||||||||||||| |||||||||||| |||||| |||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
35497243 |
aaaatagtaatggaatgatctatatgttggtcacttttatttgcaggcaatatacgcttttatttgttagtggagacaagactggaaggttaatgaaata |
35497342 |
T |
|
| Q |
535 |
tgat |
538 |
Q |
| |
|
|||| |
|
|
| T |
35497343 |
tgat |
35497346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 9e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 448 - 928
Target Start/End: Original strand, 40161260 - 40161731
Alignment:
| Q |
448 |
aatgatttatatattggtcacttttattttcaggcaatatacacttttacttgttagtggcgacaagactgggaggttaatgaaatatgataagtcaacc |
547 |
Q |
| |
|
|||||| ||||| ||||||| |||| ||| |||||| | | ||||||||| | ||||| ||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
40161260 |
aatgatctatatgttggtcatttttgtttgtaggcaaattccgcttttacttctaagtggagacaaaactggaaggttaatgaaatatgtgaagtcaaca |
40161359 |
T |
|
| Q |
548 |
aaagaagtgaaggtcttattaagaggccttgcttttcctaatggtgttgctttaagcaaagatggttcatttcttctggtagctgaaacctcaaattgca |
647 |
Q |
| |
|
||||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||| |||| ||| ||||| |||| ||||||||| | || | |
|
|
| T |
40161360 |
aaagaagtgaaggtcttattaagtggccttaattatcctaatggtgtttgtttaagcaaagacggtttattccttctagtaggtgaaacctcgactttcc |
40161459 |
T |
|
| Q |
648 |
gaattcttcggctttggcttcatggaccaaaagctggtaaagtcagtacttttgttgatcttccaggttttcccgacgatataaggagaaattcatatgg |
747 |
Q |
| |
|
| |||||||| |||||||||||||| || || |||||| |||||| |||||||| | ||||||||||| ||| ||| ||||||||||||||||| |||| |
|
|
| T |
40161460 |
ggattcttcgactttggcttcatggccctaatgctggtcaagtcaatacttttgccgttcttccaggttatccggacaatataaggagaaattcagatgg |
40161559 |
T |
|
| Q |
748 |
tcagttttgggttgctttgtattcatcagctgtaaagctgagtgatgaaggagaaatattagaaaccttagaagatttcgaaaggaagaccatgaagaac |
847 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| ||||||||||||| ||||||||||||| | | ||| |||||||||||| | |
|
|
| T |
40161560 |
gcagttttgggttgctttgcataatgcagctataaagttgagtgatgaaggggaaatattagaaa---------ttgtggaagggaagaccatgagatat |
40161650 |
T |
|
| Q |
848 |
attagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttatagtttatga |
928 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||| ||||| ||| | ||| ||||||||||||| |||||||||||||| |
|
|
| T |
40161651 |
gttagtgaagcggatgagaaagatggtaaacttttgattggatcagtgttaatgccttatattggtatttatagtttatga |
40161731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 109 - 240
Target Start/End: Complemental strand, 7417898 - 7417766
Alignment:
| Q |
109 |
tgagcagtgttatttaccgcaaaggtttttatagcgaatgcatcccgaatt-actattcaccgttacaatcttctcatggccggaaaacacgggcagttg |
207 |
Q |
| |
|
||||| ||| |||||||||| |||| | ||| | |||||||||||||| | ||| |||||| |||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
7417898 |
tgagcggtgctatttaccgcgaaggatattaacgtgaatgcatcccgaaatcactgttcaccaatacaatgttctcatggccggaaaacatgggcagttg |
7417799 |
T |
|
| Q |
208 |
tggggtaagagttttggtcaaatttcaaatata |
240 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
7417798 |
tggggtaaaagttttggtcaaatttcaaatata |
7417766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 51471798 - 51471886
Alignment:
| Q |
15 |
tagcacacaagtgctggattgtgcattcaatcacacggtcgtgccgtttccgcg-aaaaatcattcgcaccacctagcactactctatt |
102 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| || | |||||||| ||| |||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
51471798 |
tagcacacaagtgttggattgtgcatttaattacgccgtcgtgccttttacgcgaaaaaaccattcgcaccacctagcactactctatt |
51471886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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