View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5505-Insertion-2 (Length: 581)
Name: NF5505-Insertion-2
Description: NF5505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5505-Insertion-2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 17 - 581
Target Start/End: Complemental strand, 23180078 - 23179514
Alignment:
| Q |
17 |
tatggagccaggatagtaagaattgatgttgcagtcgatggtgaatgattaataggatgaagctttaactgaggcttctaaagtagcatttgggacaaca |
116 |
Q |
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| T |
23180078 |
tatggagccaggataataagaattgatgttgcagtcgatggtgaatgattaataggatgaagctttaactgaggcttctaaagtagcatttgggacaaca |
23179979 |
T |
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| Q |
117 |
tcgattgtatgaatgatcaataggagcttcaaatgaggcttctaaaaaagtagcatttgggacaatatatgttgtatctgaattttctaaatttgtacgg |
216 |
Q |
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| T |
23179978 |
tcgattgtatgaatgatcaataggagcttcaaatgaggcttctaaaaaagtagcatttgggacaatatatgttctatctgaattttctaaatttgtacag |
23179879 |
T |
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| Q |
217 |
gtaccgattccaaaattgaaatatgctcgttattttttgttctaaggatctcatttgtgatattatgtaactctaaatgaaacgatgaggaagacttatc |
316 |
Q |
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| T |
23179878 |
gtacccattccaaaattgaaatatgctcgttattttttgttctaaggatctcatttgtgatattatgtaactctaaatgaaacgatgtggaagacttatc |
23179779 |
T |
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| Q |
317 |
agtgatcaaaaggggaagaggtgcagcatcagttatcgtctgtgtctcatctgaaccttgttgagagacgtcgctaccttgttcctcatttactaaagat |
416 |
Q |
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| T |
23179778 |
agtgatcaaaaggggaagaggtgcagcatcagttatcgtctgtgtctcatctgaaccttgttaagagacttcgctaccttgttcctcatttactaaagat |
23179679 |
T |
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| Q |
417 |
gggtgagcatcatctgtaggaggttgtgcatcattagtttcggttataatgtcccttcggcttgttgaactcgattttcataaacccgtctcaaatgctt |
516 |
Q |
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| T |
23179678 |
gggtgagcatcatctgtaggaggttgtgcatcattagtttcggttataatgtcccttcggcttgttgaactcgattttcataaacccgtctcaaatgctt |
23179579 |
T |
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| Q |
517 |
tggaagaaccaatattagacggtgggttatcttttcctttccacgcttcggatgattacttcata |
581 |
Q |
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| T |
23179578 |
tggaagaaccaatattagacagcgggttatcttttcctttccacgcctcggatgattacttcata |
23179514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 17 - 581
Target Start/End: Complemental strand, 23591335 - 23590771
Alignment:
| Q |
17 |
tatggagccaggatagtaagaattgatgttgcagtcgatggtgaatgattaataggatgaagctttaactgaggcttctaaagtagcatttgggacaaca |
116 |
Q |
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| T |
23591335 |
tatggagccaggataataagaattgatgttgcagtcgatggtgaatgattaataggatgaagctttaactgaggcttctaaagtagcatttgggacaaca |
23591236 |
T |
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| Q |
117 |
tcgattgtatgaatgatcaataggagcttcaaatgaggcttctaaaaaagtagcatttgggacaatatatgttgtatctgaattttctaaatttgtacgg |
216 |
Q |
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| T |
23591235 |
tcgattgtatgaatgatcaataggagcttcaaatgaggcttctaaaaaagtagcatttgggacaatatatgttctatctgaattttctaaatttgtacag |
23591136 |
T |
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| Q |
217 |
gtaccgattccaaaattgaaatatgctcgttattttttgttctaaggatctcatttgtgatattatgtaactctaaatgaaacgatgaggaagacttatc |
316 |
Q |
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| T |
23591135 |
gtacccattccaaaattgaaatatgctcgttattttttgttctaaggatctcatttgtgatattatgtaactctaaatgaaacgatgtggaagacttatc |
23591036 |
T |
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| Q |
317 |
agtgatcaaaaggggaagaggtgcagcatcagttatcgtctgtgtctcatctgaaccttgttgagagacgtcgctaccttgttcctcatttactaaagat |
416 |
Q |
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| T |
23591035 |
agtgatcaaaaggggaagaggtgcagcatcagttatcgtctgtgtctcatctgaaccttgttaagagacttcgctaccttgttcctcatttactaaagat |
23590936 |
T |
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| Q |
417 |
gggtgagcatcatctgtaggaggttgtgcatcattagtttcggttataatgtcccttcggcttgttgaactcgattttcataaacccgtctcaaatgctt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23590935 |
gggtgagcatcatctgtaggaggttgtgcatcattagtttcggttataatgtcccttcggcttgttgaactcgattttcataaacccgtctcaaatgctt |
23590836 |
T |
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| Q |
517 |
tggaagaaccaatattagacggtgggttatcttttcctttccacgcttcggatgattacttcata |
581 |
Q |
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| T |
23590835 |
tggaagaaccaatattagacagcgggttatcttttcctttccacgcctcggatgattacttcata |
23590771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 345
Target Start/End: Complemental strand, 3685981 - 3685900
Alignment:
| Q |
264 |
atctcatttgtgatattatgtaactctaaatgaaacgatgaggaagacttatcagtgatcaaaaggggaagaggtgcagcat |
345 |
Q |
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||||||| ||||| ||| |||| | |||||||||| |||| | ||||||||||||| ||| |||||| || |||||||||| |
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| T |
3685981 |
atctcatatgtgacattttgtagcgctaaatgaaaagatgtgatagacttatcagtgttcataaggggcagtggtgcagcat |
3685900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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