View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5505-Insertion-4 (Length: 430)

Name: NF5505-Insertion-4
Description: NF5505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5505-Insertion-4
NF5505-Insertion-4
[»] chr1 (8 HSPs)
chr1 (11-429)||(15765847-15766265)
chr1 (314-421)||(15755281-15755388)
chr1 (276-414)||(15779226-15779365)
chr1 (11-43)||(29144318-29144350)
chr1 (11-42)||(34741935-34741966)
chr1 (11-44)||(22947819-22947852)
chr1 (12-41)||(25361983-25362012)
chr1 (11-43)||(21365990-21366022)
[»] chr5 (1 HSPs)
chr5 (11-44)||(6770625-6770658)
[»] chr6 (7 HSPs)
chr6 (7-42)||(8805523-8805558)
chr6 (11-41)||(13360313-13360343)
chr6 (7-45)||(24138516-24138554)
chr6 (9-42)||(7490121-7490154)
chr6 (11-43)||(4878031-4878063)
chr6 (12-44)||(8776905-8776937)
chr6 (11-43)||(17327588-17327620)
[»] chr4 (5 HSPs)
chr4 (7-41)||(28470450-28470484)
chr4 (11-41)||(36635419-36635449)
chr4 (11-44)||(3064865-3064898)
chr4 (12-44)||(35161126-35161158)
chr4 (12-44)||(53381527-53381559)
[»] chr3 (1 HSPs)
chr3 (7-41)||(27505336-27505370)
[»] chr8 (1 HSPs)
chr8 (12-45)||(29510229-29510262)
[»] chr7 (2 HSPs)
chr7 (11-44)||(5409768-5409801)
chr7 (11-43)||(35862040-35862072)
[»] chr2 (2 HSPs)
chr2 (7-40)||(3444827-3444860)
chr2 (11-44)||(37419843-37419876)
[»] scaffold0057 (1 HSPs)
scaffold0057 (11-43)||(24125-24157)


Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 11 - 429
Target Start/End: Original strand, 15765847 - 15766265
Alignment:
Q  11 gcctaatccgaagagtgtccgtgcttcataggttagaaacacactatctctcttactgtgtaaaatttatgtaggtctcatctcattatgtgagaacgat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15765847 gcctaatccgaagagtgtccgtgcttcataggttagaaacacactatctctcttactgtgtaaaatttatgtaggtctcatctcattatgtgagaacgat 15765946  T
Q  111 ttcaaaaataattggacctacacaaatttgatccagagtgttagagtccgatgtccaaaatgtgtcgcaacgaggcatgtgtggacattggttcaagtac 210  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15765947 ttcaaaaataattggacctacacgaatttgatccagagtgttagagtccgatgtccaaaatgtgtcgcaacgaggcatgtgtggacattggttcaagtac 15766046  T
Q  211 tagtcgttttaatgtcaatgttcacatattagagagtgtaagagtaagtgttgttgtcactcttcttactatgaaatattgattcttgtgtttagaatgc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15766047 tagtcgttttaatgtcaatgttcacatattagagagtgtaagagtaagtgttgttgtcactcttcttactatgaaatattgattcttgtgtttagaatgc 15766146  T
Q  311 atatgcagattccttaacaaggcatgtgtggacactggttcaagtgcaagtgatgagtggatgttatgcacaataacacaagtggaagaaaccaaacaaa 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15766147 atatgcagattccttaacaaggcatgtgtggacactggttcaagtgcaagtgatgagtggatgttatgcacagtaacacaagtggaagaaaccaaacaaa 15766246  T
Q  411 tccttagcttagtccctat 429  Q
    |||||||||||||||||||    
T  15766247 tccttagcttagtccctat 15766265  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 314 - 421
Target Start/End: Original strand, 15755281 - 15755388
Alignment:
Q  314 tgcagattccttaacaaggcatgtgtggacactggttcaagtgcaagtgatgagtggatgttatgcacaataacacaagtggaagaaaccaaacaaatcc 413  Q
    ||||| |||||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||| || ||||||||||||||||    
T  15755281 tgcaggttccttaacaaggcatgtgtggacactggttcaagtactagtaatgaatggatgttatgcacaataacacaagtagaggaaaccaaacaaatcc 15755380  T
Q  414 ttagctta 421  Q
    ||||||||    
T  15755381 ttagctta 15755388  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 276 - 414
Target Start/End: Original strand, 15779226 - 15779365
Alignment:
Q  276 ttactatgaaatattgattcttgtgtttagaa-tgcatatgcagattccttaacaaggcatgtgtggacactggttcaagtgcaagtgatgagtggatgt 374  Q
    |||||| ||||| ||||||||||| |||| || ||||| || || |||||||| ||||| ||||||||||||||||||||  | |||   |||||||||     
T  15779226 ttactaggaaatgttgattcttgtatttacaaatgcatgtgtaggttccttaataaggcttgtgtggacactggttcaagaactagtagcgagtggatga 15779325  T
Q  375 tatgcacaataacacaagtggaagaaaccaaacaaatcct 414  Q
    ||||  | ||||||||||| || || ||||||||||||||    
T  15779326 tatgtcctataacacaagtagaggagaccaaacaaatcct 15779365  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 29144350 - 29144318
Alignment:
Q  11 gcctaatccgaagagtgtccgtgcttcataggt 43  Q
    |||||||||||||||||||||||||||||||||    
T  29144350 gcctaatccgaagagtgtccgtgcttcataggt 29144318  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 42
Target Start/End: Original strand, 34741935 - 34741966
Alignment:
Q  11 gcctaatccgaagagtgtccgtgcttcatagg 42  Q
    ||||||||||||||||||||||||||||||||    
T  34741935 gcctaatccgaagagtgtccgtgcttcatagg 34741966  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 22947819 - 22947852
Alignment:
Q  11 gcctaatccgaagagtgtccgtgcttcataggtt 44  Q
    ||||||||||| ||||||||||||||||||||||    
T  22947819 gcctaatccgaggagtgtccgtgcttcataggtt 22947852  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 25361983 - 25362012
Alignment:
Q  12 cctaatccgaagagtgtccgtgcttcatag 41  Q
    ||||||||||||||||||||||||||||||    
T  25361983 cctaatccgaagagtgtccgtgcttcatag 25362012  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 21366022 - 21365990
Alignment:
Q  11 gcctaatccgaagagtgtccgtgcttcataggt 43  Q
    ||||||||||| |||||||||||||||||||||    
T  21366022 gcctaatccgaggagtgtccgtgcttcataggt 21365990  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 6770625 - 6770658
Alignment:
Q  11 gcctaatccgaagagtgtccgtgcttcataggtt 44  Q
    ||||||||||||||||||||||||||||||||||    
T  6770625 gcctaatccgaagagtgtccgtgcttcataggtt 6770658  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 8805558 - 8805523
Alignment:
Q  7 acatgcctaatccgaagagtgtccgtgcttcatagg 42  Q
    ||||||||||||||| ||||||||||||||||||||    
T  8805558 acatgcctaatccgaggagtgtccgtgcttcatagg 8805523  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 41
Target Start/End: Complemental strand, 13360343 - 13360313
Alignment:
Q  11 gcctaatccgaagagtgtccgtgcttcatag 41  Q
    |||||||||||||||||||||||||||||||    
T  13360343 gcctaatccgaagagtgtccgtgcttcatag 13360313  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 24138516 - 24138554
Alignment:
Q  7 acatgcctaatccgaagagtgtccgtgcttcataggtta 45  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  24138516 acatgcctaatccgaagagtgtccgtgctttacaggtta 24138554  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 7490121 - 7490154
Alignment:
Q  9 atgcctaatccgaagagtgtccgtgcttcatagg 42  Q
    ||||||||||| ||||||||||||||||||||||    
T  7490121 atgcctaatccaaagagtgtccgtgcttcatagg 7490154  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 4878031 - 4878063
Alignment:
Q  11 gcctaatccgaagagtgtccgtgcttcataggt 43  Q
    ||||||||||| |||||||||||||||||||||    
T  4878031 gcctaatccgaggagtgtccgtgcttcataggt 4878063  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 8776937 - 8776905
Alignment:
Q  12 cctaatccgaagagtgtccgtgcttcataggtt 44  Q
    |||||||||| ||||||||||||||||||||||    
T  8776937 cctaatccgaggagtgtccgtgcttcataggtt 8776905  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 17327620 - 17327588
Alignment:
Q  11 gcctaatccgaagagtgtccgtgcttcataggt 43  Q
    ||||||||||| |||||||||||||||||||||    
T  17327620 gcctaatccgaggagtgtccgtgcttcataggt 17327588  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 28470450 - 28470484
Alignment:
Q  7 acatgcctaatccgaagagtgtccgtgcttcatag 41  Q
    ||||||||||||||| |||||||||||||||||||    
T  28470450 acatgcctaatccgaggagtgtccgtgcttcatag 28470484  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 36635419 - 36635449
Alignment:
Q  11 gcctaatccgaagagtgtccgtgcttcatag 41  Q
    |||||||||||||||||||||||||||||||    
T  36635419 gcctaatccgaagagtgtccgtgcttcatag 36635449  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 3064898 - 3064865
Alignment:
Q  11 gcctaatccgaagagtgtccgtgcttcataggtt 44  Q
    ||||||||||| ||||||||||||||||||||||    
T  3064898 gcctaatccgaggagtgtccgtgcttcataggtt 3064865  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 35161126 - 35161158
Alignment:
Q  12 cctaatccgaagagtgtccgtgcttcataggtt 44  Q
    ||||||||||| |||||||||||||||||||||    
T  35161126 cctaatccgaaaagtgtccgtgcttcataggtt 35161158  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 53381559 - 53381527
Alignment:
Q  12 cctaatccgaagagtgtccgtgcttcataggtt 44  Q
    |||||||||| ||||||||||||||||||||||    
T  53381559 cctaatccgaggagtgtccgtgcttcataggtt 53381527  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 27505336 - 27505370
Alignment:
Q  7 acatgcctaatccgaagagtgtccgtgcttcatag 41  Q
    ||||||||||||||| |||||||||||||||||||    
T  27505336 acatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 29510262 - 29510229
Alignment:
Q  12 cctaatccgaagagtgtccgtgcttcataggtta 45  Q
    |||||||||| |||||||||||||||||||||||    
T  29510262 cctaatccgaggagtgtccgtgcttcataggtta 29510229  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 5409801 - 5409768
Alignment:
Q  11 gcctaatccgaagagtgtccgtgcttcataggtt 44  Q
    ||||||||||| ||||||||||||||||||||||    
T  5409801 gcctaatccgaggagtgtccgtgcttcataggtt 5409768  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 35862040 - 35862072
Alignment:
Q  11 gcctaatccgaagagtgtccgtgcttcataggt 43  Q
    ||||||||||| |||||||||||||||||||||    
T  35862040 gcctaatccgaggagtgtccgtgcttcataggt 35862072  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 3444860 - 3444827
Alignment:
Q  7 acatgcctaatccgaagagtgtccgtgcttcata 40  Q
    ||||||||||||||| ||||||||||||||||||    
T  3444860 acatgcctaatccgaggagtgtccgtgcttcata 3444827  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 37419843 - 37419876
Alignment:
Q  11 gcctaatccgaagagtgtccgtgcttcataggtt 44  Q
    ||||||||||| ||||||||||||||||||||||    
T  37419843 gcctaatccgaggagtgtccgtgcttcataggtt 37419876  T

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Target: scaffold0057 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 24125 - 24157
Alignment:
Q  11 gcctaatccgaagagtgtccgtgcttcataggt 43  Q
    ||||||||||| |||||||||||||||||||||    
T  24125 gcctaatccgatgagtgtccgtgcttcataggt 24157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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