View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5505-Insertion-7 (Length: 222)

Name: NF5505-Insertion-7
Description: NF5505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5505-Insertion-7
NF5505-Insertion-7
[»] chr2 (2 HSPs)
chr2 (8-222)||(4311851-4312065)
chr2 (21-222)||(4304810-4305011)
[»] chr5 (1 HSPs)
chr5 (11-222)||(41935876-41936087)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 4312065 - 4311851
Alignment:
Q  8 cttcctccctccattacctcccttgctctatggtctttttcaagcctgcacacattggagtgcatggggcttctccacctcacgtccctcgagaaattaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4312065 cttcctccctccattacctcccttgctctatggtctttttcaagcctgcacacattggagtgcatggggcttctccacctcacgtccctcgagaaattaa 4311966  T
Q  108 caattgagtactgccccaagctggagactctggaaggagaaaggttgcctgcttctctaatcgaacttcaaatcgctagatgtcctctgttggaagaacg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4311965 caattgagtactgccccaagctggagactctggaaggagaaaggttgcctgcttctctaatcgaacttcaaatcgctagatgtcctctgttggaagaacg 4311866  T
Q  208 gtgccgcatgaaaca 222  Q
    |||||||||||||||    
T  4311865 gtgccgcatgaaaca 4311851  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 4305011 - 4304810
Alignment:
Q  21 ttacctcccttgctctatggtctttttcaagcctgcacacattggagtgcatggggcttctccacctcacgtccctcgagaaattaacaattgagtactg 120  Q
    |||||||||| |||||||||    | |||||  ||||||| |||||||| |  | |||||||||||| || |||||| |  ||||||||||| |  ||||    
T  4305011 ttacctccctagctctatgggaaatgtcaagtttgcacacgttggagtgtacagagcttctccacctaacatccctccaacaattaacaattaatgactg 4304912  T
Q  121 ccccaagctggagactctggaaggagaaaggttgcctgcttctctaatcgaacttcaaatcgctagatgtcctctgttggaagaacggtgccgcatgaaa 220  Q
    |||||||||||||| | |||  ||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  4304911 ccccaagctggagaatatggtgggagaaaggctgcctgcttctctaataaaacttcaaatcgctagatgtcctctgttggaagaagggtgcctcatgaaa 4304812  T
Q  221 ca 222  Q
    ||    
T  4304811 ca 4304810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 41935876 - 41936087
Alignment:
Q  11 cctccctccattacctcccttgctctatggtctttttcaagcctgcacacattggagtgcatggggcttctccacctcacgtccctcgagaaattaacaa 110  Q
    ||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |  ||||||||     
T  41935876 cctccctcccttacctccctggatctatggactttttcaagcctgcacacattggagtgcatggggcttctccacctcaagtccctccaacaattaacag 41935975  T
Q  111 ttgagtactgccccaagctggagactctggaaggagaaaggttgcctgcttctctaatcgaacttcaaatcgctagatgtcctctgttggaagaacggtg 210  Q
    ||||  |||| |||| |||||||||| |||||||||||||| ||||| ||||||||||  ||||| |||| | |  ||||||| ||||||||||| ||||    
T  41935976 ttgaagactgtcccatgctggagactatggaaggagaaaggctgcctccttctctaataaaacttgaaattgttgaatgtcctttgttggaagaaaggtg 41936075  T
Q  211 ccgcatgaaaca 222  Q
    ||||||||||||    
T  41936076 ccgcatgaaaca 41936087  T

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