View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5505_high_2 (Length: 251)

Name: NF5505_high_2
Description: NF5505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5505_high_2
NF5505_high_2
[»] chr4 (36 HSPs)
chr4 (53-191)||(28614781-28614919)
chr4 (98-179)||(20936042-20936121)
chr4 (77-131)||(29467621-29467675)
chr4 (50-136)||(44319963-44320049)
chr4 (64-137)||(6978946-6979019)
chr4 (106-179)||(51044506-51044578)
chr4 (77-179)||(19422369-19422471)
chr4 (59-117)||(33534148-33534206)
chr4 (59-116)||(2996607-2996664)
chr4 (77-134)||(32799737-32799794)
chr4 (77-113)||(27721754-27721790)
chr4 (67-123)||(45927376-45927432)
chr4 (98-137)||(2977995-2978034)
chr4 (128-179)||(4071833-4071884)
chr4 (64-107)||(7063535-7063578)
chr4 (128-187)||(27623578-27623637)
chr4 (94-137)||(29388627-29388670)
chr4 (57-124)||(40653542-40653609)
chr4 (59-134)||(41603390-41603465)
chr4 (50-123)||(21523585-21523658)
chr4 (128-186)||(21593080-21593137)
chr4 (64-138)||(28749891-28749965)
chr4 (98-132)||(29601026-29601060)
chr4 (128-186)||(54325105-54325163)
chr4 (64-117)||(2874608-2874661)
chr4 (64-117)||(4691881-4691934)
chr4 (89-134)||(13126585-13126630)
chr4 (88-137)||(19429722-19429771)
chr4 (82-179)||(25487567-25487664)
chr4 (59-136)||(46415771-46415848)
chr4 (50-111)||(52754638-52754699)
chr4 (59-123)||(1312868-1312932)
chr4 (69-117)||(20105420-20105467)
chr4 (64-112)||(25571298-25571346)
chr4 (131-179)||(32724070-32724118)
chr4 (60-136)||(53673638-53673714)
[»] chr3 (32 HSPs)
chr3 (69-179)||(49586925-49587035)
chr3 (50-136)||(34254778-34254864)
chr3 (50-136)||(37273148-37273234)
chr3 (51-117)||(43115089-43115155)
chr3 (59-136)||(36646361-36646438)
chr3 (57-136)||(1217777-1217856)
chr3 (65-136)||(30923883-30923954)
chr3 (85-179)||(44284085-44284177)
chr3 (91-137)||(28795864-28795910)
chr3 (78-136)||(33883748-33883806)
chr3 (128-192)||(1395609-1395673)
chr3 (80-136)||(22214659-22214715)
chr3 (49-133)||(27290870-27290954)
chr3 (59-143)||(36200103-36200187)
chr3 (64-112)||(41724250-41724298)
chr3 (77-116)||(26599193-26599232)
chr3 (64-131)||(31010421-31010488)
chr3 (77-136)||(31403161-31403220)
chr3 (70-136)||(11253515-11253581)
chr3 (50-132)||(24624228-24624310)
chr3 (59-136)||(25182966-25183044)
chr3 (64-122)||(47132022-47132080)
chr3 (75-128)||(1360521-1360574)
chr3 (67-136)||(32069163-32069232)
chr3 (92-137)||(35959468-35959513)
chr3 (69-117)||(3044248-3044296)
chr3 (92-136)||(21367681-21367725)
chr3 (58-118)||(27016427-27016487)
chr3 (64-136)||(41452537-41452609)
chr3 (65-117)||(51206483-51206535)
chr3 (70-114)||(52619039-52619083)
chr3 (59-123)||(54775154-54775218)
[»] chr8 (37 HSPs)
chr8 (59-136)||(11415168-11415245)
chr8 (77-173)||(20672729-20672823)
chr8 (50-176)||(14949842-14949966)
chr8 (64-111)||(11813089-11813136)
chr8 (59-179)||(9540975-9541094)
chr8 (59-137)||(10062120-10062198)
chr8 (68-136)||(31862507-31862575)
chr8 (58-136)||(8062343-8062421)
chr8 (58-136)||(35220701-35220779)
chr8 (47-136)||(8062538-8062627)
chr8 (59-132)||(25869245-25869318)
chr8 (79-136)||(30389113-30389170)
chr8 (64-117)||(31875579-31875632)
chr8 (59-116)||(37740406-37740462)
chr8 (61-114)||(41620272-41620325)
chr8 (65-117)||(8558884-8558936)
chr8 (73-117)||(9700034-9700078)
chr8 (88-136)||(30277253-30277301)
chr8 (59-131)||(34290888-34290960)
chr8 (58-117)||(13000402-13000461)
chr8 (77-135)||(31885058-31885114)
chr8 (50-136)||(4055586-4055672)
chr8 (59-117)||(7111301-7111359)
chr8 (133-179)||(26215447-26215493)
chr8 (98-179)||(36643911-36643990)
chr8 (50-136)||(39551179-39551265)
chr8 (50-111)||(5088891-5088952)
chr8 (59-136)||(11569436-11569513)
chr8 (59-136)||(26473731-26473808)
chr8 (50-103)||(29890850-29890903)
chr8 (77-137)||(3254238-3254298)
chr8 (49-117)||(8558693-8558761)
chr8 (57-133)||(24258083-24258159)
chr8 (59-134)||(29973167-29973243)
chr8 (70-123)||(36338189-36338243)
chr8 (67-143)||(39866721-39866797)
chr8 (64-136)||(43368684-43368756)
[»] chr5 (33 HSPs)
chr5 (59-118)||(11700357-11700416)
chr5 (98-179)||(29116968-29117049)
chr5 (57-136)||(41957428-41957507)
chr5 (50-112)||(13264075-13264137)
chr5 (128-186)||(35135730-35135788)
chr5 (50-137)||(2468444-2468532)
chr5 (64-136)||(7674662-7674734)
chr5 (89-136)||(7984983-7985030)
chr5 (50-133)||(28586736-28586819)
chr5 (50-96)||(11457152-11457198)
chr5 (132-186)||(37063146-37063200)
chr5 (59-136)||(32172667-32172744)
chr5 (59-179)||(985584-985704)
chr5 (89-136)||(4014433-4014480)
chr5 (76-115)||(5284444-5284483)
chr5 (58-117)||(11297174-11297233)
chr5 (128-179)||(14295457-14295508)
chr5 (58-124)||(16380549-16380616)
chr5 (61-136)||(36638761-36638836)
chr5 (59-117)||(8089969-8090027)
chr5 (64-136)||(3280698-3280771)
chr5 (78-123)||(31071266-31071311)
chr5 (91-136)||(36318788-36318833)
chr5 (63-136)||(36542265-36542338)
chr5 (77-137)||(1899167-1899227)
chr5 (92-136)||(6593313-6593357)
chr5 (64-136)||(10272415-10272487)
chr5 (100-136)||(10771908-10771944)
chr5 (77-117)||(14331400-14331440)
chr5 (77-117)||(17258880-17258920)
chr5 (132-180)||(37386565-37386613)
chr5 (50-98)||(38047849-38047897)
chr5 (50-98)||(40499696-40499744)
[»] chr2 (29 HSPs)
chr2 (50-136)||(32821823-32821909)
chr2 (54-136)||(33192216-33192298)
chr2 (50-111)||(14299601-14299662)
chr2 (129-190)||(17952770-17952831)
chr2 (51-136)||(18179211-18179296)
chr2 (50-117)||(11063521-11063588)
chr2 (87-145)||(3973540-3973598)
chr2 (78-136)||(7103480-7103538)
chr2 (66-132)||(10285373-10285439)
chr2 (53-111)||(14316118-14316176)
chr2 (70-136)||(35993370-35993436)
chr2 (57-117)||(9595291-9595351)
chr2 (63-134)||(41851551-41851623)
chr2 (57-136)||(17221517-17221596)
chr2 (128-179)||(31740027-31740078)
chr2 (70-168)||(31228827-31228925)
chr2 (57-114)||(9875442-9875499)
chr2 (64-117)||(13189370-13189423)
chr2 (50-135)||(15120198-15120283)
chr2 (64-117)||(33580537-33580590)
chr2 (77-138)||(44458335-44458396)
chr2 (58-98)||(6561389-6561429)
chr2 (50-98)||(10143200-10143248)
chr2 (90-122)||(14220832-14220864)
chr2 (58-94)||(15171387-15171423)
chr2 (77-133)||(29316772-29316828)
chr2 (91-190)||(32098341-32098438)
chr2 (77-136)||(41293159-41293219)
chr2 (64-136)||(43811125-43811196)
[»] chr7 (25 HSPs)
chr7 (58-143)||(39539759-39539844)
chr7 (66-179)||(7244653-7244764)
chr7 (104-190)||(42656455-42656541)
chr7 (50-114)||(24967097-24967161)
chr7 (50-134)||(39334209-39334293)
chr7 (59-111)||(39360062-39360114)
chr7 (53-136)||(9423567-9423650)
chr7 (63-117)||(23214888-23214942)
chr7 (77-118)||(6552289-6552330)
chr7 (64-133)||(12234873-12234942)
chr7 (69-117)||(45901186-45901234)
chr7 (89-136)||(5947198-5947245)
chr7 (51-114)||(21247962-21248025)
chr7 (50-117)||(39345504-39345571)
chr7 (58-117)||(39551526-39551585)
chr7 (50-117)||(48157090-48157157)
chr7 (52-110)||(39566179-39566237)
chr7 (59-117)||(46082069-46082127)
chr7 (89-134)||(2825240-2825285)
chr7 (64-117)||(44808191-44808244)
chr7 (64-116)||(753003-753055)
chr7 (130-178)||(18749880-18749928)
chr7 (80-136)||(24363601-24363657)
chr7 (89-137)||(33601419-33601467)
chr7 (59-111)||(36598335-36598387)
[»] chr6 (25 HSPs)
chr6 (50-136)||(34939758-34939844)
chr6 (59-111)||(2034425-2034477)
chr6 (58-117)||(9027611-9027670)
chr6 (51-136)||(2455824-2455909)
chr6 (58-135)||(4420658-4420735)
chr6 (59-136)||(7148680-7148757)
chr6 (59-111)||(2027385-2027437)
chr6 (65-117)||(27909623-27909675)
chr6 (73-117)||(29296288-29296332)
chr6 (53-117)||(31420978-31421042)
chr6 (128-179)||(1402947-1402998)
chr6 (49-116)||(11600843-11600910)
chr6 (63-126)||(27615256-27615319)
chr6 (89-136)||(34430470-34430517)
chr6 (66-136)||(281834-281904)
chr6 (98-136)||(19800454-19800492)
chr6 (57-98)||(3525176-3525217)
chr6 (77-122)||(34404722-34404767)
chr6 (59-136)||(34939527-34939604)
chr6 (64-136)||(2117417-2117489)
chr6 (59-123)||(5329000-5329064)
chr6 (64-136)||(20368164-20368236)
chr6 (64-132)||(31624108-31624176)
chr6 (65-137)||(32925149-32925221)
chr6 (81-137)||(34538219-34538275)
[»] chr1 (44 HSPs)
chr1 (59-137)||(33185937-33186014)
chr1 (89-138)||(27820205-27820254)
chr1 (77-137)||(3224436-3224496)
chr1 (65-117)||(7761596-7761648)
chr1 (65-117)||(11695894-11695946)
chr1 (89-137)||(27820346-27820394)
chr1 (77-177)||(33975543-33975643)
chr1 (91-178)||(601014-601100)
chr1 (77-136)||(7136995-7137054)
chr1 (57-136)||(11639393-11639472)
chr1 (128-179)||(29007784-29007835)
chr1 (72-131)||(31294513-31294572)
chr1 (89-136)||(45975704-45975751)
chr1 (89-136)||(51695504-51695551)
chr1 (59-137)||(27140491-27140569)
chr1 (128-179)||(15360845-15360896)
chr1 (64-111)||(17628638-17628685)
chr1 (77-136)||(25479595-25479654)
chr1 (68-143)||(28689440-28689515)
chr1 (77-136)||(34290250-34290309)
chr1 (128-179)||(44936658-44936709)
chr1 (128-186)||(4276704-4276762)
chr1 (67-117)||(4549263-4549313)
chr1 (59-117)||(19412576-19412634)
chr1 (59-136)||(6279413-6279490)
chr1 (59-132)||(15437981-15438054)
chr1 (98-179)||(24146298-24146378)
chr1 (61-136)||(28083274-28083346)
chr1 (129-190)||(28768036-28768097)
chr1 (59-136)||(33722380-33722457)
chr1 (72-117)||(37593676-37593721)
chr1 (98-179)||(37818415-37818491)
chr1 (99-143)||(38160041-38160086)
chr1 (58-179)||(46499852-46499973)
chr1 (98-134)||(1232923-1232959)
chr1 (50-118)||(3597251-3597319)
chr1 (77-113)||(4202148-4202184)
chr1 (77-113)||(5082870-5082906)
chr1 (77-117)||(6292526-6292566)
chr1 (59-131)||(10439705-10439777)
chr1 (50-118)||(15579514-15579582)
chr1 (59-111)||(34380484-34380536)
chr1 (77-137)||(44422712-44422772)
chr1 (93-137)||(51190861-51190905)
[»] scaffold0003 (1 HSPs)
scaffold0003 (64-136)||(306340-306412)
[»] scaffold0147 (1 HSPs)
scaffold0147 (64-134)||(12688-12758)
[»] scaffold0020 (1 HSPs)
scaffold0020 (66-136)||(159959-160029)
[»] scaffold0590 (1 HSPs)
scaffold0590 (131-179)||(1145-1193)
[»] scaffold0275 (1 HSPs)
scaffold0275 (131-179)||(2782-2830)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 53 - 191
Target Start/End: Original strand, 28614781 - 28614919
Alignment:
Q  53 ttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggc 152  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  28614781 ttttgaagagcttatggaaacaatttatgacatatccataagctcttttcagcttattttcataagttctctaggatagcttattcgaaaatagtatggc 28614880  T
Q  153 tttaatttatcttttgttatagaaatattttatatatat 191  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  28614881 tttaatttatcttttgttacagaaatattttatatatat 28614919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 20936042 - 20936121
Alignment:
Q  98 ttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    ||||||||||||| ||||||| || |||  |||||||| | ||||||||| || ||||| ||||||||||||||||||||||    
T  20936042 ttttcagcttattctcataaactcacta--atagcttacatgaaaatagtttgactttattttatcttttgttatagaaata 20936121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 29467621 - 29467675
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatag 131  Q
    ||||||||| |||||||||| |||||||||||||| |||||| ||||||||||||    
T  29467621 ttatgacatgtccataagctgttttcagcttatttccataaactctctaggatag 29467675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 44320049 - 44319963
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||| | |||| ||||| |||||| ||||||  ||||||| |||| |||||| || |||||||||| ||||||||||||||||||    
T  44320049 ctgtttgggagagcttatgaaaacaaattatgatgtatccattagctattttcaactaattttcataagttctctaggatagcttat 44319963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 6978946 - 6979019
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    |||| |||| || ||||||||| || ||||||| ||||||||||||||||||||| ||| |||||| |||||||    
T  6978946 ttattgaaataacttatgacatgtctataagctgttttcagcttattttcataaactctttaggatggcttata 6979019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 51044506 - 51044578
Alignment:
Q  106 ttattttcataaattctctaggatagcttatacgaaaa-tagtatggctttaatttatcttttgttatagaaata 179  Q
    |||||||||||| ||||||||||||||||||  |||||  ||| || ||||| ||||||||||||||||||||||    
T  51044506 ttattttcataagttctctaggatagcttat--gaaaacaagtttgactttattttatcttttgttatagaaata 51044578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 19422471 - 19422369
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatcttttgttatagaa 176  Q
    ||||||||| | |||| ||| |||||| ||||||| |||||  |||| ||||||| ||||| |||||  || || ||||| | |||||||||||||||||    
T  19422471 ttatgacatgtgcatacgcttttttcaacttatttccataagctctccaggatagtttatatgaaaaatgtttgactttattatatcttttgttatagaa 19422372  T
Q  177 ata 179  Q
    |||    
T  19422371 ata 19422369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 33534148 - 33534206
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||| ||||| |||||| || ||||||||||||||| | ||||||||||||||||||||    
T  33534148 agagcttatgaaaacaaattgtgacatatccataagttgttttcagcttattttcataa 33534206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 2996664 - 2996607
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcata 116  Q
    |||| ||||| |||||| ||||||||| |||||||||| |||||| ||||||||||||    
T  2996664 agagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcata 2996607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 32799737 - 32799794
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatagctt 134  Q
    |||||||| ||||||||||| ||||||||||||||  ||||| |||||| ||||||||    
T  32799737 ttatgacacatccataagctgttttcagcttatttcgataaactctctatgatagctt 32799794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 27721790 - 27721754
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttc 113  Q
    |||||||||||||||||||| ||||||||||||||||    
T  27721790 ttatgacatatccataagctgttttcagcttattttc 27721754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 45927432 - 45927376
Alignment:
Q  67 tggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctc 123  Q
    ||||||||||| ||||||||  |||||||| |||||||||||||| |||||| ||||    
T  45927432 tggaaacaattcatgacatacgcataagctgttttcagcttatttccataaactctc 45927376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 2977995 - 2978034
Alignment:
Q  98 ttttcagcttattttcataaattctctaggatagcttata 137  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  2977995 ttttcagcttattttcataagttttctaggatagcttata 2978034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 4071884 - 4071833
Alignment:
Q  128 atagcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    |||||||||| ||||||| | || ||||| ||||||||||||||||||||||    
T  4071884 atagcttatatgaaaataatttgactttattttatcttttgttatagaaata 4071833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 7063578 - 7063535
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagctt 107  Q
    |||||| ||||||||||||||| |||||||||| ||||||||||    
T  7063578 ttatgggaacaatttatgacatttccataagctattttcagctt 7063535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 27623637 - 27623578
Alignment:
Q  128 atagcttatacgaaaatagtatggctttaatttatcttttgttatagaaatattttatat 187  Q
    ||||||||||  |||||||| || ||||| |||||||||||||||| |||||| ||||||    
T  27623637 atagcttatattaaaatagtttgactttattttatcttttgttatacaaatatcttatat 27623578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 29388670 - 29388627
Alignment:
Q  94 gctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    |||||||||| ||||||||||||||||||| || ||||||||||    
T  29388670 gctcttttcaacttattttcataaattctccagtatagcttata 29388627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 40653542 - 40653609
Alignment:
Q  57 gaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctct 124  Q
    |||||||||||||||||||||||||||||   |||||| | ||||||   |||||||||||| |||||    
T  40653542 gaagagtttatggaaacaatttatgacatggacataagttgttttcaaagtattttcataaactctct 40653609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 41603390 - 41603465
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagctt 134  Q
    |||| ||||| ||||| || ||||||||| |||||||| |||||||||||||| ||||| | ||| | ||||||||    
T  41603390 agagcttatgtaaacagttaatgacatattcataagctattttcagcttatttccataagtgctccatgatagctt 41603465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 21523658 - 21523585
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatc-cataagctcttttcagcttattttcataaattctc 123  Q
    |||||| ||||| |||||| |||||| ||||||||| |  |||||||| |||||||||||||||||||| |||||    
T  21523658 ctgtttggaagaatttatgaaaacaacttatgacatttttcataagct-ttttcagcttattttcataacttctc 21523585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 21593080 - 21593137
Alignment:
Q  128 atagcttatacgaaaatagtatggctttaatttatcttttgttatagaaatattttata 186  Q
    |||||||||| ||||||||| || ||||| ||||||||| |||||||||||| ||||||    
T  21593080 atagcttatatgaaaatagt-tgactttattttatctttagttatagaaatagtttata 21593137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 28749891 - 28749965
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatac 138  Q
    ||||||||| || |||| |||| ||||||| || |||||| || ||||||||||||| || | ||||||||||||    
T  28749891 ttatggaaataacttattacatgtccataaactgttttcaactcattttcataaattatccaagatagcttatac 28749965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 132
Target Start/End: Original strand, 29601026 - 29601060
Alignment:
Q  98 ttttcagcttattttcataaattctctaggatagc 132  Q
    |||||||||||||||||||| ||||||||||||||    
T  29601026 ttttcagcttattttcataagttctctaggatagc 29601060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 54325105 - 54325163
Alignment:
Q  128 atagcttatacgaaaatagtatggctttaatttatcttttgttatagaaatattttata 186  Q
    |||||||||| ||||| ||| || ||||| |||||||||||| ||||||||| ||||||    
T  54325105 atagcttatatgaaaacagtttgactttattttatcttttgtaatagaaatagtttata 54325163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 2874608 - 2874661
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||||||||||| ||||||||| ||||||| || ||||| |||||||| |||||    
T  2874608 ttatggaaacaacttatgacatgtccataatctattttccgcttatttccataa 2874661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 4691934 - 4691881
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||||||||||| |||||||||  ||||| | | ||||||||||||||||||||    
T  4691934 ttatggaaacaacttatgacatgcccatatgttgttttcagcttattttcataa 4691881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 13126585 - 13126630
Alignment:
Q  89 cataagctcttttcagcttattttcataaattctctaggatagctt 134  Q
    |||||||| |||||||||||||||||||| ||||| | ||||||||    
T  13126585 cataagcttttttcagcttattttcataagttctcgaagatagctt 13126630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 19429771 - 19429722
Alignment:
Q  88 ccataagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    ||||||||| |||||||||||||| |||||  |||| |||||||||||||    
T  19429771 ccataagctgttttcagcttatttccataagctctccaggatagcttata 19429722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 25487567 - 25487664
Alignment:
Q  82 acatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    |||| |||||||||| || ||| ||||||| ||||| ||| | || |||||||||| ||||| |   || ||||| ||||| ||||||||||||||||    
T  25487567 acatgtccataagctgttatcaacttatttccataagttccccagaatagcttatatgaaaaaaacgtgactttattttattttttgttatagaaata 25487664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 46415771 - 46415848
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||||||| ||||||  |||||||| |||||||| | ||||||||| |||||  |||  |||| ||||||||||||    
T  46415771 agagtttatgcaaacaacctatgacatgtccataagttgttttcagctaattttactaagctctcgaggatagcttat 46415848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 52754699 - 52754638
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattt 111  Q
    |||||| |||||| ||||| ||||| |||||||| | ||||||||||  |||||||||||||    
T  52754699 ctgtttggaagagcttatgaaaacagtttatgacgtgtccataagctgctttcagcttattt 52754638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 1312932 - 1312868
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctc 123  Q
    |||||||| | |||||| |||| |||||| ||||| || |||||||||||||| |||||| ||||    
T  1312932 agagtttacgaaaacaacttattacatattcataaactgttttcagcttatttccataaactctc 1312868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 20105420 - 20105467
Alignment:
Q  69 gaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||||| ||||||||||| |||||||| |||||||||||||| |||||    
T  20105420 gaaacaacttatgacatattcataagct-ttttcagcttatttacataa 20105467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 25571346 - 25571298
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttatttt 112  Q
    ||||||||||| ||||||| || | |||||||| |||||||||||||||    
T  25571346 ttatggaaacagtttatgatatgttcataagctgttttcagcttatttt 25571298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 32724118 - 32724070
Alignment:
Q  131 gcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    ||||||| ||||||||| || ||||| |||||||||||| |||||||||    
T  32724118 gcttatatgaaaatagtttgactttattttatcttttgtaatagaaata 32724070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 53673638 - 53673714
Alignment:
Q  60 gagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||||||||||  ||| | || |||||||| | |||||||||||||| |||||  |||| | ||||||||||    
T  53673638 gagtttatggaaacaacatatcatatgtccataagttgttttcagcttatttacataagctctccaagatagcttat 53673714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 49586925 - 49587035
Alignment:
Q  69 gaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatcttttg 168  Q
    |||||| ||||||||||||||||||| | ||||||| ||||||   |||  |||| | ||||||||||| ||||| ||| || ||||| |||||||||||    
T  49586925 gaaacagtttatgacatatccataagttgttttcagtttatttctttaatctctccaagatagcttatatgaaaacagtttgactttattttatcttttg 49587024  T
Q  169 ttatagaaata 179  Q
    |||||||||||    
T  49587025 ttatagaaata 49587035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 34254778 - 34254864
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||| ||| || ||||| ||||| |||||||||||||||||||||  ||||||||||||| ||||| ||||| || |||||||||    
T  34254778 ctgtttggaaaagcttatgaaaacagtttatgacatatccataagctactttcagcttatttacataagttctccagaatagcttat 34254864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 37273234 - 37273148
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||| | |||| |||||||||||| ||||||||| |||||||| | |||||| ||||||| ||||| ||||| | ||||||||||    
T  37273234 ctgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttat 37273148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 43115155 - 43115089
Alignment:
Q  51 tgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||  | |||||||||||||| |||||    
T  43115155 tgtttggaagagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataa 43115089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 36646361 - 36646438
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||| |||||||||| | ||||| ||| |||||||||| |||||| |||||||  ||||| |||||||||||||||||    
T  36646361 agagcttatggaaaccacttatggcatgtccataagctgttttcatcttatttctataaactctctaggatagcttat 36646438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 1217777 - 1217856
Alignment:
Q  57 gaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||| ||| |||||||  ||||||||| |||||||| | |||||| |||| |||||||| ||||| ||||||||||||    
T  1217777 gaagagcttacggaaacagcttatgacatgtccataagttgttttcatcttactttcataagttctcaaggatagcttat 1217856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 30923883 - 30923954
Alignment:
Q  65 tatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||||  ||||||||| || ||||||| ||||||||||||||  ||||| |||||||||||| ||||    
T  30923883 tatggaaacagcttatgacatgtctataagctgttttcagcttatttctataaactctctaggataggttat 30923954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 44284085 - 44284177
Alignment:
Q  85 tatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    |||||||||||| ||||||||||||||  ||||  |||| ||||||||||||  ||||| ||| || ||||  ||||| ||||||||||||||||    
T  44284085 tatccataagctattttcagcttatttctataagctctccaggatagcttat--gaaaacagtttgactttgttttattttttgttatagaaata 44284177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 28795864 - 28795910
Alignment:
Q  91 taagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||||    
T  28795864 taagctcttttcagcttattttcataagttctctaatatagcttata 28795910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 33883748 - 33883806
Alignment:
Q  78 tatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||||| | |||||| | |||||||||||||||||||| ||||||| ||||||||||    
T  33883748 tatgacatgttcataagttgttttcagcttattttcataagttctctaagatagcttat 33883806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 1395673 - 1395609
Alignment:
Q  128 atagcttatacgaaaatagtatggctttaatttatcttttgttatagaaatattttatatatatg 192  Q
    |||||||||| ||||||| | || ||||| ||||||||||||||||||||||  ||||| |||||    
T  1395673 atagcttatatgaaaataatttgactttattttatcttttgttatagaaatagcttatacatatg 1395609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 22214659 - 22214715
Alignment:
Q  80 tgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||| |||||||||| |||||||||||||| | |||  |||||||||||||||||    
T  22214659 tgacatgtccataagctgttttcagcttatttccgtaatgtctctaggatagcttat 22214715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 27290870 - 27290954
Alignment:
Q  49 gctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagct 133  Q
    ||||||| |||||| ||||| |||||  |||||||||  ||||||||| |||||||||||||| ||| || |||  |||||||||    
T  27290870 gctgtttcgaagagcttatgaaaacagcttatgacatgcccataagctgttttcagcttatttccatgaactctgcaggatagct 27290954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 36200187 - 36200103
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaa 143  Q
    ||||||| || |||||| ||||||||| |||||||| | |||||||||||||| ||| |  |||  ||||||||||||| |||||    
T  36200187 agagtttttgtaaacaacttatgacatgtccataagttgttttcagcttatttccatgagctctacaggatagcttataagaaaa 36200103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 41724298 - 41724250
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttatttt 112  Q
    |||||||||||| ||||||||| |||||||| | |||||||||||||||    
T  41724298 ttatggaaacaacttatgacatgtccataagttgttttcagcttatttt 41724250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 26599232 - 26599193
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcata 116  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  26599232 ttatgacatatccataagctgatttcagcttattttcata 26599193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 31010488 - 31010421
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatag 131  Q
    |||| ||||||| ||||||||| |||||||||| ||||||||||| || |||||  |||||| |||||    
T  31010488 ttatagaaacaacttatgacatgtccataagctgttttcagcttaattccataagctctctatgatag 31010421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 31403220 - 31403161
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||| ||| |||||||||| |||||||||||||  ||| || |||||||||||||||||    
T  31403220 ttatgtcatgtccataagctgttttcagcttattaccatgaactctctaggatagcttat 31403161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 11253581 - 11253515
Alignment:
Q  70 aaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||| |||||||||||| |||| || |||||||| ||||| | |||  |||||||||||||||||    
T  11253581 aaacaacttatgacatatctataaactgttttcagcctatttccctaagctctctaggatagcttat 11253515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 24624310 - 24624228
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagc 132  Q
    |||||| |||||| ||||| |||||  ||||||||| ||||||| || |||||||||||||  |||||  | |||||||||||    
T  24624310 ctgtttggaagagcttatgaaaacagcttatgacatgtccataaactgttttcagcttattaacataagatttctaggatagc 24624228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 25182966 - 25183044
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagct-cttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||| ||||| |||||| ||||||||||||||||||||  |||||||| ||||| || ||||| || | ||||||||||    
T  25182966 agagcttatgaaaacaacttatgacatatccataagctatttttcagcatatttccacaaattttccatgatagcttat 25183044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 47132080 - 47132022
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattct 122  Q
    ||||| |||||| ||||| ||||||||||| || ||||||||||||||| |||| ||||    
T  47132080 ttatgaaaacaacttatgtcatatccataaactgttttcagcttatttttataagttct 47132022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 1360521 - 1360574
Alignment:
Q  75 atttatgacatatccataagctcttttcagcttattttcataaattctctagga 128  Q
    ||||||||||| |||||||||| |||||||||||||| || ||| ||| |||||    
T  1360521 atttatgacatgtccataagctattttcagcttatttccacaaactctttagga 1360574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 32069232 - 32069163
Alignment:
Q  67 tggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||||||||| | |  ||||||| |||||| |||||||||||||||  |||| | ||||||||||    
T  32069232 tggaaacaatttatgtcgtgcccataagttctttttagcttattttcataatctctccaagatagcttat 32069163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 35959468 - 35959513
Alignment:
Q  92 aagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    ||||| ||||||||||||||||| ||||||||||  ||||||||||    
T  35959468 aagcttttttcagcttattttcaaaaattctctaatatagcttata 35959513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 3044248 - 3044296
Alignment:
Q  69 gaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||||| ||||||||| | |||||||| |||||| |||||||||||||    
T  3044248 gaaacaacttatgacatgttcataagctgttttcaacttattttcataa 3044296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 21367725 - 21367681
Alignment:
Q  92 aagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||| |||||||||||||||||||| ||||| | ||||||||||    
T  21367725 aagctgttttcagcttattttcataagttctccaagatagcttat 21367681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 27016427 - 27016487
Alignment:
Q  58 aagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaa 118  Q
    |||||||||||||||||  | |||||||||| ||||  | |||||||||||||| ||||||    
T  27016427 aagagtttatggaaacagctcatgacatatctataacttgttttcagcttatttccataaa 27016487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 41452609 - 41452537
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||| ||||||| |||||| || || ||||||| |||||| ||||||| || || ||||| ||||||||||||    
T  41452609 ttatagaaacaacttatgatatgtctataagctgttttcaccttatttccacaacttctccaggatagcttat 41452537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 51206483 - 51206535
Alignment:
Q  65 tatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||||||||  ||||||| |||||| ||| | ||||||||||||||||||||    
T  51206483 tatggaaacagcttatgacctatccaaaagttgttttcagcttattttcataa 51206535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 52619083 - 52619039
Alignment:
Q  70 aaacaatttatgacatatccataagctcttttcagcttattttca 114  Q
    |||||||||||||||| | |||||||| |||||| ||||||||||    
T  52619083 aaacaatttatgacatgttcataagctattttcaccttattttca 52619039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 54775218 - 54775154
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctc 123  Q
    |||||||||||||| || |||||  || ||||||||||  ||||| |||||||||||||| ||||    
T  54775218 agagtttatggaaataacttatgttatgtccataagctgctttcatcttattttcataaactctc 54775154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 11415245 - 11415168
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||||||||||  |||| |||| |||||||||| || |||||||||||||| ||| |||||||||||||||||    
T  11415245 agagtttatggaaacagcttataacatgtccataagctattctcagcttattttcacaaactctctaggatagcttat 11415168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 20672823 - 20672729
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatcttttgttata 173  Q
    ||||||||| | |||||||| ||||||||||||||||||||  |||| |||||||||||||  |||| ||| || ||||| ||||||||||||||||    
T  20672823 ttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttata--aaaacagtttgactttattttatcttttgttata 20672729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 176
Target Start/End: Complemental strand, 14949966 - 14949842
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaatagtat 149  Q
    |||||| | |||| ||||| ||| || ||||||||| |||||||||| ||||||||||||||  ||||  ||| |||||||||||||  ||||| ||| |    
T  14949966 ctgtttaggagagcttatgaaaataacttatgacatgtccataagctgttttcagcttatttctataatctctttaggatagcttat--gaaaagagttt 14949869  T
Q  150 ggctttaatttatcttttgttatagaa 176  Q
    | || || |||||||||||||||||||    
T  14949868 gactctattttatcttttgttatagaa 14949842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 11813089 - 11813136
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattt 111  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  11813089 ttatggaaacaatttatgacatatccataggctgttttcagcttattt 11813136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 179
Target Start/End: Original strand, 9540975 - 9541094
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaa- 157  Q
    |||| |||||||||||  ||||||||| |||||||  | | ||||||||||||||| ||  |||||||||||||||||  ||||||||  || ||| ||     
T  9540975 agagcttatggaaacatcttatgacatgtccataatttgtgttcagcttattttcaaaagctctctaggatagcttat--gaaaataggttgacttcaat 9541072  T
Q  158 tttatcttttgttatagaaata 179  Q
    ||||||||||| ||||||||||    
T  9541073 tttatcttttgctatagaaata 9541094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 10062120 - 10062198
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    |||| |||||| |||| |||||||||| || ||||||| |||||||||||||| |||||| || | |||||||||||||    
T  10062120 agagcttatggcaacattttatgacatttctataagctgttttcagcttatttgcataaactcacaaggatagcttata 10062198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 31862575 - 31862507
Alignment:
Q  68 ggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||| ||| ||||||| ||| |||||||| ||||||||||||||||||||  ||||||||||| |||||    
T  31862575 ggaagcaacttatgacctatgcataagctgttttcagcttattttcataagctctctaggataacttat 31862507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 8062421 - 8062343
Alignment:
Q  58 aagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||||||||||| ||||  || | |||||||| | |||||||||||||| |||||  |||||| ||||||||||    
T  8062421 aagagtttatggaaacagtttacaacgtgtccataagatgttttcagcttatttccataatctctctaagatagcttat 8062343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 35220701 - 35220779
Alignment:
Q  58 aagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||||| ||||| ||||||||||  ||||||||| |||| |||||||||| ||||  |||| || |||||||||    
T  35220701 aagagtttatgaaaacagtttatgacatgcccataagctatttttagcttatttttataagctctccagaatagcttat 35220779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 8062627 - 8062538
Alignment:
Q  47 gtgctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||||||||  ||||||||||||| |  ||  |||  || |||||||| ||| ||||||||||||||||| |||||| ||||||||||    
T  8062627 gtgctgttttggggagtttatggaaatagcttccgacgcattcataagctatttccagcttattttcataaactctctaagatagcttat 8062538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 25869245 - 25869318
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagc 132  Q
    ||||| |||||||| || ||||||||| |||||||| | |||||||||||||| |||||| |||| | ||||||    
T  25869245 agagtctatggaaataacttatgacatgtccataagttgttttcagcttatttccataaactctccatgatagc 25869318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 30389170 - 30389113
Alignment:
Q  79 atgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||| | |||||| | |||||||||||||||||||| |||||||||| |||||||    
T  30389170 atgacatgttcataagttgttttcagcttattttcataagttctctaggaaagcttat 30389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 31875579 - 31875632
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||||||||||| ||||||||| |||||||||  |||||| |||||||||||||    
T  31875579 ttatggaaacaacttatgacatgtccataagccattttcaacttattttcataa 31875632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 37740406 - 37740462
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcata 116  Q
    ||||||||||||||||| ||||||||| ||||||| || |||||||||||||| ||||    
T  37740406 agagtttatggaaacaacttatgacatgtccataa-ctattttcagcttatttccata 37740462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 41620272 - 41620325
Alignment:
Q  61 agtttatggaaacaatttatgacatatccataagctcttttcagcttattttca 114  Q
    ||||||||||||||| ||||||||| |||||||| | ||||| |||||||||||    
T  41620272 agtttatggaaacaaattatgacatgtccataagttgttttccgcttattttca 41620325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 8558936 - 8558884
Alignment:
Q  65 tatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||||||||| |||||||||| || | |||| ||||||||||||||||||||    
T  8558936 tatggaaacaacttatgacatacccgtcagctattttcagcttattttcataa 8558884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 9700078 - 9700034
Alignment:
Q  73 caatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||||||||||| |||||||||| |||||| |||||||||||||    
T  9700078 caatttatgacatgtccataagctgttttcaccttattttcataa 9700034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 30277253 - 30277301
Alignment:
Q  88 ccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||| | |||||||||||||| |||||| |||||||||||||||||    
T  30277253 ccataagttgttttcagcttatttccataaactctctaggatagcttat 30277301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 34290960 - 34290888
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatag 131  Q
    |||||||||||| |||  |||| |||| |||||||||  |||||||||||||||||| || |||| |||||||    
T  34290960 agagtttatggagacagcttattacatgtccataagcctttttcagcttattttcattaactctccaggatag 34290888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 13000402 - 13000461
Alignment:
Q  58 aagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||||||||||| ||||| ||||||||| |||| ||| | |||||||||||||| |||||    
T  13000402 aagagtttatggtaacaacttatgacatgtccacaagttgttttcagcttatttccataa 13000461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 31885058 - 31885114
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatagctta 135  Q
    ||||||||||| |||||||| |||||||||||||||  |||  ||||||||||||||||    
T  31885058 ttatgacatattcataagctattttcagcttatttt--taagctctctaggatagctta 31885114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 4055586 - 4055672
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||| | ||||||||| |||| || ||||||||| ||||||| || |||||||||||||| | |||  |||||  ||||||||||    
T  4055586 ctgtttgggagagtttatagaaataacttatgacatgtccataaactgttttcagcttatttccttaagctctctgagatagcttat 4055672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 7111359 - 7111301
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||| ||||| |||||||| ||||||||| | |||||| |||| |||||||||||||||    
T  7111359 agagcttatgaaaacaattgatgacatattcgtaagctgtttttagcttattttcataa 7111301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 26215493 - 26215447
Alignment:
Q  133 ttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    ||||||||||||||| |  ||||| ||||||||||||||||||||||    
T  26215493 ttatacgaaaatagtttaactttattttatcttttgttatagaaata 26215447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 36643911 - 36643990
Alignment:
Q  98 ttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    |||||||||||||| ||||  ||||| | ||||||||||  ||||||||| || ||||| | |||||||| |||||||||||    
T  36643911 ttttcagcttatttccatacgttctccatgatagcttat--gaaaatagtttgactttactgtatcttttattatagaaata 36643990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 136
Target Start/End: Original strand, 39551179 - 39551265
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||| | ||| ||||||||||||| ||||||||| |||| ||||| |||| | |||||||| ||||  |||| |||| |||||||    
T  39551179 ctgtttgggagaatttatggaaacaacttatgacatgtccaaaagctgtttttaacttatttttataagctctccaggaaagcttat 39551265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 5088952 - 5088891
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattt 111  Q
    |||| ||| |||| ||||||||||| ||||| |||| |||||||||| |||||| |||||||    
T  5088952 ctgtcttggagagcttatggaaacagtttataacatgtccataagctgttttcaacttattt 5088891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 11569436 - 11569513
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||| |||||||||||  ||||||||| | |||||| | ||||||||||||||||| ||  |||| | ||||||||||    
T  11569436 agagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttat 11569513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 26473731 - 26473808
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||| ||||| |||||  ||||||||| || |||||||  ||| | |||||||||||||  |||||||||||||||||    
T  26473731 agagcttatgaaaacagcttatgacatgtctataagctagttttaacttattttcataagctctctaggatagcttat 26473808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 29890850 - 29890903
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttca 103  Q
    |||||| | |||||||||||||||||||| |||||  |||||||||| ||||||    
T  29890850 ctgtttggtagagtttatggaaacaatttttgacaagtccataagctgttttca 29890903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 3254298 - 3254238
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    ||||||||| | |||||||| ||||||||||||||  ||| | ||| ||||||||||||||    
T  3254298 ttatgacatgttcataagctgttttcagcttatttctatacactctataggatagcttata 3254238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 8558761 - 8558693
Alignment:
Q  49 gctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||||| | |||| |||||||||||| || |||||| ||||| | || ||||||| ||||||||||||    
T  8558761 gctgtttgggagagcttatggaaacaacttgtgacatgtccatcaactattttcagattattttcataa 8558693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 24258159 - 24258083
Alignment:
Q  57 gaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagct 133  Q
    |||||| || || |||||||||||||||| | |||| | | |||| ||||||||| |||||| ||| ||||||||||    
T  24258159 gaagagcttgtgaaaacaatttatgacatgtacataggttattttaagcttatttacataaactctttaggatagct 24258083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 29973243 - 29973167
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctc-ttttcagcttattttcataaattctctaggatagctt 134  Q
    |||| |||||||||||| |||  |||| |||| |||||  ||||||| |||||| ||||||||||| ||||||||||    
T  29973243 agagcttatggaaacaacttacaacatgtccaaaagctggttttcagtttatttccataaattctcaaggatagctt 29973167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 36338243 - 36338189
Alignment:
Q  70 aaacaatttatgacatat--ccataagctcttttcagcttattttcataaattctc 123  Q
    |||||||||||||||| |  ||| ||||| ||||||||||||||||||||||||||    
T  36338243 aaacaatttatgacatttttcca-aagctattttcagcttattttcataaattctc 36338189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 39866721 - 39866797
Alignment:
Q  67 tggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaa 143  Q
    ||||||||| ||||  ||| |||||||||| ||||||| ||||||||||||  |||  | ||||||||||| |||||    
T  39866721 tggaaacaacttatagcatgtccataagctgttttcagtttattttcataagctcttcaagatagcttatatgaaaa 39866797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 43368684 - 43368756
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||| |||||| ||||||||| | ||| |||| |||||| ||||||||||| || ||| ||||| |||||||    
T  43368684 ttatgaaaacaacttatgacatgttcattagctattttcaacttattttcatgaactctttaggacagcttat 43368756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 11700357 - 11700416
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaa 118  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||| |||||||||||||    
T  11700357 agagtttatggaaacaacttatgacatgtccataagctgttttcagattattttcataaa 11700416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 29116968 - 29117049
Alignment:
Q  98 ttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    |||||||||||||| |||||  | |  ||||||||||||||||||| ||| || ||||| ||||||||||||||||||||||    
T  29116968 ttttcagcttatttgcataagcttttcaggatagcttatacgaaaacagtttgactttattttatcttttgttatagaaata 29117049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 41957428 - 41957507
Alignment:
Q  57 gaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||| ||| |||||||  ||||||||| |||||||| | |||||| ||||||||||||| ||||| ||||||||||||    
T  41957428 gaagagcttacggaaacagcttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagcttat 41957507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 13264075 - 13264137
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttatttt 112  Q
    |||||| ||||||||||||||||||  ||||| ||||| |||||||| |||||||||||||||    
T  13264075 ctgtttggaagagtttatggaaacagcttatgccatattcataagctgttttcagcttatttt 13264137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 35135730 - 35135788
Alignment:
Q  128 atagcttatacgaaaatagtatggctttaatttatcttttgttatagaaatattttata 186  Q
    |||||||||| ||||||||| || ||||| ||||||||||||||||||||||| |||||    
T  35135730 atagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttata 35135788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 2468532 - 2468444
Alignment:
Q  50 ctgttttgaagagtttatggaaacaattt-atgacatatccataagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    |||||||| |||  ||||||||||||||| ||||||| |||||||||| |||| |||||| || |||||| |||  |||||||||||||    
T  2468532 ctgttttggagaacttatggaaacaattttatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttata 2468444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 7674734 - 7674662
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||||||||| ||||||||| |  ||||| | ||||||||||||||||| |||||||| | ||||||||||    
T  7674734 ttatggaaacaacttatgacatgtttataaggtgttttcagcttattttcacaaattctccaagatagcttat 7674662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 7985030 - 7984983
Alignment:
Q  89 cataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||||| |||||||||||||||||||||||||| | ||||||||||    
T  7985030 cataagctgttttcagcttattttcataaattctccaagatagcttat 7984983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 28586736 - 28586819
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagct 133  Q
    |||||| | |||| ||||||||| |  ||||||||||||| |||||| ||||||||||||||  ||||  ||||||||||||||    
T  28586736 ctgtttgggagagcttatggaaatagcttatgacatatccgtaagctgttttcagcttatttcgataagctctctaggatagct 28586819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 11457198 - 11457152
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagct 96  Q
    ||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  11457198 ctgttttgaagagcttatggaaacaacttatgacatgtccataagct 11457152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 37063146 - 37063200
Alignment:
Q  132 cttatacgaaaatagtatggctttaatttatcttttgttatagaaatattttata 186  Q
    |||||| ||||||||| || ||||| |||||||||||||||||||||| ||||||    
T  37063146 cttatatgaaaatagtttgactttattttatcttttgttatagaaatagtttata 37063200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 32172744 - 32172667
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||| |||||||||||| ||||||||| |||||||||  |||||||||||||| ||| | ||||  | ||||||||||    
T  32172744 agagcttatggaaacaacttatgacatgtccataagccattttcagcttatttccattagttcttcatgatagcttat 32172667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 985704 - 985584
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaat 158  Q
    |||| ||||| ||| || ||||||||| |||| ||||  |||||||||||||| ||||   |||  | ||||||||||  ||||| ||| || ||||| |    
T  985704 agagattatgcaaataacttatgacatgtccacaagcggttttcagcttatttccatagtctcttcatgatagcttatgtgaaaacagtttgactttatt 985605  T
Q  159 ttatcttttgttatagaaata 179  Q
    |||||||||||||| ||||||    
T  985604 ttatcttttgttatggaaata 985584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 4014433 - 4014480
Alignment:
Q  89 cataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||||| |||||||||||||||||||| ||||| | ||||||||||    
T  4014433 cataagctgttttcagcttattttcataagttctccaagatagcttat 4014480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 5284444 - 5284483
Alignment:
Q  76 tttatgacatatccataagctcttttcagcttattttcat 115  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  5284444 tttatgacatgtccataagcttttttcagcttattttcat 5284483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 11297174 - 11297233
Alignment:
Q  58 aagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||| |||||||||||| ||| ||||| || || |||| ||||||||||||||||||||    
T  11297174 aagagcttatggaaacaacttaagacatgtcaattagctattttcagcttattttcataa 11297233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 14295508 - 14295457
Alignment:
Q  128 atagcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    |||||||||| ||||| ||| || ||||| ||||||||||||||||||||||    
T  14295508 atagcttatatgaaaacagtttgactttattttatcttttgttatagaaata 14295457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 16380549 - 16380616
Alignment:
Q  58 aagagtttatggaaacaatttatgacatatccataagctctttt-cagcttattttcataaattctct 124  Q
    |||||||||||||||||  ||| ||||| |||||||||| |||| |||||||||| ||||| ||||||    
T  16380549 aagagtttatggaaacagcttacgacatgtccataagctgttttgcagcttatttccataagttctct 16380616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 36638836 - 36638761
Alignment:
Q  61 agtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||||| ||||  | |||||||| | |||||||| |||||||||||||| |||||  ||||||||||| |||||    
T  36638836 agtttatgaaaactgtgtatgacatgttcataagcttttttcagcttatttccataagctctctaggataacttat 36638761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 8090027 - 8089969
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||| ||||| |||||| |||||| |||| | |||||| ||||||||||||||||||||    
T  8090027 agagcttatgaaaacaacttatgatatattcctaagctgttttcagcttattttcataa 8089969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 3280698 - 3280771
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaa-ttctctaggatagcttat 136  Q
    ||||| |||||  ||||||||| | ||||||||||||| || ||||||||||||| ||||| | ||||||||||    
T  3280698 ttatgaaaacagcttatgacatcttcataagctctttttagtttattttcataaagttctcaaagatagcttat 3280771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 31071311 - 31071266
Alignment:
Q  78 tatgacatatccataagctcttttcagcttattttcataaattctc 123  Q
    |||| ||||| |||||||| |||||||||||||| |||||||||||    
T  31071311 tatgccatattcataagctgttttcagcttatttgcataaattctc 31071266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 36318833 - 36318788
Alignment:
Q  91 taagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||| |||||||||||||| ||||||||||| | ||||||||||    
T  36318833 taagctgttttcagcttatttacataaattctccaagatagcttat 36318788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 36542265 - 36542338
Alignment:
Q  63 tttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||||||  ||||||||| |||| ||||| |||| | ||||||| || ||  |||||||||||||||||    
T  36542265 tttatggaaacatcttatgacatgtccagaagctgtttttaacttatttccacaagctctctaggatagcttat 36542338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 1899227 - 1899167
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    ||||||||| | |||||| | |||||||||||||| ||||||||||| || ||| ||||||    
T  1899227 ttatgacatgtgcataagttgttttcagcttatttccataaattctccagtataacttata 1899167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 6593357 - 6593313
Alignment:
Q  92 aagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||||||||||||||||||||  |||||| | ||||||||    
T  6593357 aagctcttttcagcttattttcataagctctctaaggtagcttat 6593313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 10272415 - 10272487
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||| ||||||| ||||||||| ||  |||| | ||||||||||||||||||||| |||| | ||| ||||||    
T  10272415 ttatagaaacaacttatgacatgtctgtaagttgttttcagcttattttcataaactctccaagatggcttat 10272487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 10771908 - 10771944
Alignment:
Q  100 ttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  10771908 ttcagcttattttcataaactctctcggatagcttat 10771944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 14331440 - 14331400
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||||||| ||||||||||  |||||||||||||||||||    
T  14331440 ttatgacatgtccataagctgatttcagcttattttcataa 14331400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 17258880 - 17258920
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||||||| | |||||||| ||||||||||||||||||||    
T  17258880 ttatgacatgttcataagctgttttcagcttattttcataa 17258920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 37386613 - 37386565
Alignment:
Q  132 cttatacgaaaatagtatggctttaatttatcttttgttatagaaatat 180  Q
    |||||| ||||||||| || ||||||||| |||||| ||||||||||||    
T  37386613 cttatatgaaaatagtttgcctttaatttttcttttattatagaaatat 37386565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 38047849 - 38047897
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctct 98  Q
    |||||| | |||| |||||||||||| ||||||||| ||||||||||||    
T  38047849 ctgtttgggagagcttatggaaacaacttatgacatgtccataagctct 38047897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 40499696 - 40499744
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctct 98  Q
    |||||| | |||| |||||||||||| ||||||||| ||||||||||||    
T  40499696 ctgtttaggagagcttatggaaacaacttatgacatgtccataagctct 40499744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 32821909 - 32821823
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||| ||||||||||| ||||||| ||||||||| |||||||||| ||||||| ||||||  ||||  ||| |||||||||||||    
T  32821909 ctgtttggaagagtttatagaaacaacttatgacatgtccataagctgttttcagtttatttctataagctctttaggatagcttat 32821823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 33192298 - 33192216
Alignment:
Q  54 tttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||  ||||| ||||| ||||||||||||||||||||| |||||||||||| || ||||  |||| ||||||||||||    
T  33192298 tttgaagaacttatgaaaacagtttatgacatatccataagctgttttcagcttatatttataagctctccaggatagcttat 33192216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 14299601 - 14299662
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattt 111  Q
    |||||| ||||||||||||||||||| ||||||||||||||||   | ||||||||||||||    
T  14299601 ctgtttggaagagtttatggaaacaacttatgacatatccatacattgttttcagcttattt 14299662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 17952770 - 17952831
Alignment:
Q  129 tagcttatacgaaaatagtatggctttaatttatcttttgttatagaaatattttatatata 190  Q
    ||||||||| ||||||||| || ||||| ||||||||||||||||||||||  |||||||||    
T  17952770 tagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatata 17952831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 18179211 - 18179296
Alignment:
Q  51 tgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||| |||| ||||||| |||||  ||| ||||| ||||| |||| |||||||||||||||| ||| ||||| ||||||||||||    
T  18179211 tgtttggaagtgtttatgaaaacatcttaagacatgtccattagctattttcagcttattttcgtaagttctccaggatagcttat 18179296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 11063588 - 11063521
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||||| |||||| |||||||||||  ||||||||| |||||||| | |||| |||||||||||||||    
T  11063588 ctgtttggaagagcttatggaaacatattatgacatgtccataagttgtttttagcttattttcataa 11063521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 3973598 - 3973540
Alignment:
Q  87 tccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaata 145  Q
    ||||||| || |||||||||||||| |||||| || ||||||||||||||| |||||||    
T  3973598 tccataacctgttttcagcttatttccataaactccctaggatagcttatatgaaaata 3973540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 136
Target Start/End: Original strand, 7103480 - 7103538
Alignment:
Q  78 tatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||||||||||| | |||| |||||||||||| ||| |||||| ||||||||||    
T  7103480 tatgacatatccataagttgtttttagcttattttcacaaactctctaagatagcttat 7103538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 10285439 - 10285373
Alignment:
Q  66 atggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagc 132  Q
    ||||| |||| ||||||||| |||||||||| |||||||||||||||| ||| || |||| ||||||    
T  10285439 atggagacaagttatgacatgtccataagctgttttcagcttattttcttaagttatctatgatagc 10285373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 14316118 - 14316176
Alignment:
Q  53 ttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattt 111  Q
    ||||| |||| |||||||||||| |||||||||||  ||||||| ||||||||||||||    
T  14316118 ttttggagagcttatggaaacaacttatgacatatgtataagctgttttcagcttattt 14316176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 35993370 - 35993436
Alignment:
Q  70 aaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||| |||||||| | |||||||  | |||||||||||||||||||| ||||||| ||||||||||    
T  35993370 aaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttat 35993436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 9595351 - 9595291
Alignment:
Q  57 gaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||||||||||| |||||  ||||||||| ||||| | || ||||||||||||||||||||    
T  9595351 gaagagtttatgaaaacatcttatgacatgtccatgaactattttcagcttattttcataa 9595291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 41851623 - 41851551
Alignment:
Q  63 tttatggaaacaatttatgaca-tatccataagctcttttcagcttattttcataaattctctaggatagctt 134  Q
    ||||||||||||| |||||||| | | |||||||| || |||||||| |||||||||||||| | ||||||||    
T  41851623 tttatggaaacaacttatgacacttttcataagcttttctcagcttaatttcataaattctccaagatagctt 41851551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 17221517 - 17221596
Alignment:
Q  57 gaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||| ||||||||| |  ||||||||||||||||| || |||| ||||||||| | |||  ||||| |||||||||||    
T  17221517 gaagagcttatggaaatatcttatgacatatccataaactttttttagcttatttccgtaagatctctcggatagcttat 17221596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 31740027 - 31740078
Alignment:
Q  128 atagcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    |||||||||| ||||||||| || ||||| ||||||||| ||||||||||||    
T  31740027 atagcttatatgaaaatagtttgactttattttatctttagttatagaaata 31740078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 31228827 - 31228925
Alignment:
Q  70 aaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatcttttg 168  Q
    |||||||||||||||| |  ||||||| |||| || |||||| |||||| |||| | |||| |||||| ||||| | | || ||||| |||||||||||    
T  31228827 aaacaatttatgacatgtatataagctgtttttaggttatttccataaactctccatgataacttatatgaaaacaatttgcctttattttatcttttg 31228925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 9875442 - 9875499
Alignment:
Q  57 gaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttca 114  Q
    |||||||||||| |||  |  |||||||||| |||||||| |||||||||||||||||    
T  9875442 gaagagtttatgaaaatgacatatgacatattcataagctgttttcagcttattttca 9875499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 13189370 - 13189423
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||||||||||||||| ||||||||||||  |  ||||||||||||| |||||    
T  13189370 ttatggaaacaatttataacatatccataaattactttcagcttatttccataa 13189423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 15120283 - 15120198
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagctta 135  Q
    |||||| | |||| |||||||||||| ||||||||| | ||| |||| |||| |||||||||| ||||  |||| | |||||||||    
T  15120283 ctgtttgggagagcttatggaaacaacttatgacatgttcattagctgttttaagcttattttgataagctctccatgatagctta 15120198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 33580590 - 33580537
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||| |||||  ||||||||||||||||||||  |||||| ||||||||||||    
T  33580590 ttatgaaaacagcttatgacatatccataagctgctttcagattattttcataa 33580537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 44458335 - 44458396
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatac 138  Q
    |||||||||||||||||| | |||| |||||||||  ||||| |||| | ||||||||||||    
T  44458335 ttatgacatatccataagttgtttttagcttatttatataaactctccatgatagcttatac 44458396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 6561429 - 6561389
Alignment:
Q  58 aagagtttatggaaacaatttatgacatatccataagctct 98  Q
    ||||| |||||||||||| |||||||||||| |||||||||    
T  6561429 aagagcttatggaaacaacttatgacatatctataagctct 6561389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 10143248 - 10143200
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctct 98  Q
    |||||| | ||| ||||||| ||||||||||||||||||||||| ||||    
T  10143248 ctgtttgggagaatttatgggaacaatttatgacatatccataaactct 10143200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 14220832 - 14220864
Alignment:
Q  90 ataagctcttttcagcttattttcataaattct 122  Q
    |||||||||||||||||||||||||||| ||||    
T  14220832 ataagctcttttcagcttattttcataagttct 14220864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 15171423 - 15171387
Alignment:
Q  58 aagagtttatggaaacaatttatgacatatccataag 94  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  15171423 aagagtttatggaaacaatttataacatatacataag 15171387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 29316772 - 29316828
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatagct 133  Q
    ||||||||| | |||||| |||||||||||||||| ||||| ||||| | |||||||    
T  29316772 ttatgacatgttcataagttcttttcagcttatttccataagttctccaagatagct 29316828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 32098341 - 32098438
Alignment:
Q  91 taagctcttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatcttttgttatagaaatattttatatata 190  Q
    |||||| |||||||||||||| | ||| ||||| |  ||| |||||  ||||| | | || ||||| ||||||||||||||||||||||  |||||||||    
T  32098341 taagctattttcagcttatttccgtaagttctccataataacttat--gaaaacactttgactttattttatcttttgttatagaaatagcttatatata 32098438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 41293159 - 41293219
Alignment:
Q  77 ttatgacatatc-cataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||| || |||||||| |||||||||||| ||||||| | ||| ||||||||||||    
T  41293159 ttatgacatttcgcataagctgttttcagcttatattcataagtactccaggatagcttat 41293219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 43811196 - 43811125
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||||||||| ||||| |||   |||||||| |||||||||||  |||||||  |||||||||||||||||    
T  43811196 ttatggaaacaacttatggcatggtcataagctgttttcagctta-gttcataacctctctaggatagcttat 43811125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 39539759 - 39539844
Alignment:
Q  58 aagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaa 143  Q
    ||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||| | ||  || | ||||||||||||| |||||    
T  39539759 aagagtttacggaaacaacttatgacatgtccataagctgttttcagcttattttgacaagctcccgaggatagcttatatgaaaa 39539844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 7244764 - 7244653
Alignment:
Q  66 atggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatctt 165  Q
    ||||||||||||||||||||   |||||| | ||||||||||||||||||||  |||| |  |||||||||  ||||| ||| || ||||  ||||||||    
T  7244764 atggaaacaatttatgacatgctcataagttgttttcagcttattttcataagctctccaatatagcttat--gaaaacagtttgactttcttttatctt 7244667  T
Q  166 ttgttatagaaata 179  Q
    ||| ||||||||||    
T  7244666 ttgatatagaaata 7244653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 190
Target Start/End: Complemental strand, 42656541 - 42656455
Alignment:
Q  104 gcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatcttttgttatagaaatattttatatata 190  Q
    ||||||||||||||  |||| | |||||||||||| |||||  | || ||||| ||||||||||||||||||||||  |||||||||    
T  42656541 gcttattttcataagctctccaagatagcttatacaaaaatgatttgactttattttatcttttgttatagaaatagcttatatata 42656455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 24967161 - 24967097
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttca 114  Q
    |||||| |||||| |||||||||||| |||| ||||||||| ||| | |||||||||||||||||    
T  24967161 ctgtttggaagagattatggaaacaacttataacatatccagaagttgttttcagcttattttca 24967097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 39334293 - 39334209
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagctt 134  Q
    |||||| | ||||||||||||||||||||||||||| |||||||| |   |||||||||||| |||||  || | ||||||||||    
T  39334293 ctgtttggtagagtttatggaaacaatttatgacatgtccataagttgcattcagcttatttccataagctcgccaggatagctt 39334209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 39360114 - 39360062
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattt 111  Q
    ||||||||||||||||| |||||||||||||||||| |  |||||||||||||    
T  39360114 agagtttatggaaacaacttatgacatatccataagttgctttcagcttattt 39360062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 9423567 - 9423650
Alignment:
Q  53 ttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||| || |||||||||||||||||||||||| | |||||| | ||||||||||||||  | ||  |||| ||||||||||||    
T  9423567 ttttgtagtgtttatggaaacaatttatgacatgttcataagttgttttcagcttatttcaagaagctctccaggatagcttat 9423650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 23214942 - 23214888
Alignment:
Q  63 tttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||||| |||||| ||||||||| |||||||||||| |||||||||| |||||||    
T  23214942 tttatgaaaacaacttatgacatttccataagctctattcagcttatgttcataa 23214888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 6552289 - 6552330
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaa 118  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  6552289 ttatgacatattcataagctgttttcagcttattttcataaa 6552330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 12234873 - 12234942
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagct 133  Q
    |||| ||||||| ||||||||| || ||||||| |||||||||||||| |||||  ||||||||| ||||    
T  12234873 ttatagaaacaacttatgacatgtctataagctgttttcagcttatttccataagctctctaggaaagct 12234942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 45901234 - 45901186
Alignment:
Q  69 gaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||||||||||| |||| |||||||||| ||||||| ||||||||||||    
T  45901234 gaaacaatttataacatgtccataagcttttttcagtttattttcataa 45901186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 5947245 - 5947198
Alignment:
Q  89 cataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||||||||||||||||||||||| |||||   ||||||||||    
T  5947245 cataagctcttttcagcttattttcataacttctcctagatagcttat 5947198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 21248025 - 21247962
Alignment:
Q  51 tgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttca 114  Q
    |||||| ||||||||||||||| || ||||||||| | |||||| | |||| ||||||||||||    
T  21248025 tgttttaaagagtttatggaaataacttatgacatgttcataagttgttttaagcttattttca 21247962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 39345571 - 39345504
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||||| | |||||| ||||||||| |||||||||| |||||||| |  ||||||||||||| |||||    
T  39345571 ctgtttggtagagttcatggaaacagtttatgacatgtccataagttgctttcagcttatttccataa 39345504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 39551526 - 39551585
Alignment:
Q  58 aagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||| |||||||||||| ||||||||| |||||||| | || ||||||||||| |||||    
T  39551526 aagaggttatggaaacaacttatgacatgtccataaggtgttgtcagcttatttccataa 39551585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 48157090 - 48157157
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||||| | |||| |||| ||||||| ||||| ||| |||||||||| |||||||||||||| |||||    
T  48157090 ctgtttgggagagcttatagaaacaacttatgccatgtccataagctgttttcagcttatttccataa 48157157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 39566179 - 39566237
Alignment:
Q  52 gttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttatt 110  Q
    |||| |||||| ||||||||||| ||||| |||| |||||||| | |||||||||||||    
T  39566179 gtttagaagagcttatggaaacattttatcacatgtccataagttgttttcagcttatt 39566237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 46082127 - 46082069
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||| ||||| |||||| |||||||||  ||||||| | ||||||||||||||||||||    
T  46082127 agagcttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataa 46082069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 2825240 - 2825285
Alignment:
Q  89 cataagctcttttcagcttattttcataaattctctaggatagctt 134  Q
    |||||| | |||||||||||||| ||||| ||||||||||||||||    
T  2825240 cataagttattttcagcttatttccataagttctctaggatagctt 2825285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 44808244 - 44808191
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||| ||| || ||||||||| ||||||| || ||||||||||||||||||||    
T  44808244 ttatgaaaataacttatgacatgtccataacctgttttcagcttattttcataa 44808191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 753055 - 753003
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcata 116  Q
    ||||| ||||| ||||||||||||| ||||||| |||| |||| |||||||||    
T  753055 ttatgaaaacagtttatgacatatcaataagctgtttttagctaattttcata 753003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 18749880 - 18749928
Alignment:
Q  130 agcttatacgaaaatagtatggctttaatttatcttttgttatagaaat 178  Q
    ||||||||  |||||||| || ||||| |||||||||||||||||||||    
T  18749880 agcttatataaaaatagtttgactttactttatcttttgttatagaaat 18749928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 24363601 - 24363657
Alignment:
Q  80 tgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||| |||||||| | |||||||||||||| |||||  |||| ||||||||||||    
T  24363601 tgacatgtccataagttgttttcagcttatttccataacctctccaggatagcttat 24363657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 33601419 - 33601467
Alignment:
Q  89 cataagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    |||||||| |||||||||||  ||||||| ||||||| |||||||||||    
T  33601419 cataagcttttttcagcttaaattcataagttctctaagatagcttata 33601467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 36598335 - 36598387
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattt 111  Q
    |||| |||||||||||  ||||||||| | |||||||| ||||||||||||||    
T  36598335 agagcttatggaaacatcttatgacatgttcataagctgttttcagcttattt 36598387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 34939844 - 34939758
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||||| |||| ||| |||||||  ||||||||| |||||||  | |||||||||||||| |||||| |||| ||||||||||||    
T  34939844 ctgttttggagagcttacggaaacagcttatgacatgtccataaattgttttcagcttatttccataaactctccaggatagcttat 34939758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 2034425 - 2034477
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattt 111  Q
    ||||||||||||||||  ||||||||| |||||||||| ||||||||||||||    
T  2034425 agagtttatggaaacagcttatgacatttccataagctgttttcagcttattt 2034477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 9027670 - 9027611
Alignment:
Q  58 aagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||| ||||||||| || ||||||||| |||||||| | ||||||||||||||||||||    
T  9027670 aagagcttatggaaataacttatgacatgtccataagttgttttcagcttattttcataa 9027611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 2455909 - 2455824
Alignment:
Q  51 tgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||| |||||| |||||||||||| |||||||||  |||||| || |||||| ||||||| |||||  |||| | ||||||||||    
T  2455909 tgtttagaagagcttatggaaacaacttatgacatgcccataaactattttcaacttatttccataagctctccaagatagcttat 2455824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 4420735 - 4420658
Alignment:
Q  58 aagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagctta 135  Q
    ||||| |||| ||||||| ||||||||| | |||||||| |||||||||||||| |||||  |||| | |||||||||    
T  4420735 aagagcttatagaaacaaattatgacatgttcataagctgttttcagcttatttccataagctctccaagatagctta 4420658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 7148757 - 7148680
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||| ||| |||||||| ||||||| | |||||||||| |||||| |||||||||||||  |||| ||| ||||||||    
T  7148757 agagcttacggaaacaacttatgacttgtccataagctattttcaacttattttcataagctctccagggtagcttat 7148680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 2027385 - 2027437
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattt 111  Q
    |||||||||| |||||  ||||||||| |||||||||| ||||||||||||||    
T  2027385 agagtttatgaaaacagcttatgacatttccataagctgttttcagcttattt 2027437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 27909623 - 27909675
Alignment:
Q  65 tatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||||||||||| |||||||| |||||||| | |||||||||||||| |||||    
T  27909623 tatggaaacaatatatgacatgtccataagttgttttcagcttatttccataa 27909675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 29296288 - 29296332
Alignment:
Q  73 caatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||||||||||| |||||||| | ||||||||||||||||||||    
T  29296288 caatttatgacatgtccataagttattttcagcttattttcataa 29296332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 31421042 - 31420978
Alignment:
Q  53 ttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||||||||| ||||| |||||| ||||  ||||| |||||| | ||||||||||||||||||||    
T  31421042 ttttgaagagcttatgaaaacaacttatcgcatattcataagttgttttcagcttattttcataa 31420978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 1402998 - 1402947
Alignment:
Q  128 atagcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    |||||||||| ||||||||| |  ||||| ||||||||||||||||||||||    
T  1402998 atagcttatatgaaaatagtttaactttattttatcttttgttatagaaata 1402947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 11600843 - 11600910
Alignment:
Q  49 gctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcata 116  Q
    ||||||||| ||||||| || |||||  ||||||||| |||| || || |||||||||||||||||||    
T  11600843 gctgttttgtagagtttttgaaaacagcttatgacatgtccaaaaactattttcagcttattttcata 11600910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 27615256 - 27615319
Alignment:
Q  63 tttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctag 126  Q
    ||||||||||||| ||||||||| | |||||||| ||||||  | |||| ||||||||||||||    
T  27615256 tttatggaaacaacttatgacatgttcataagctattttcaagtaatttccataaattctctag 27615319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 34430470 - 34430517
Alignment:
Q  89 cataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||||| |||||||||||||||||||| ||||| | ||||||||||    
T  34430470 cataagcttttttcagcttattttcataacttctccaagatagcttat 34430517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 281834 - 281904
Alignment:
Q  66 atggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||| ||| ||||||||| || ||||| | |||||||||||||| ||| |  |||||||||||||||||    
T  281834 atggaagcaacttatgacatgtctataagttgttttcagcttatttccatgagctctctaggatagcttat 281904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 19800454 - 19800492
Alignment:
Q  98 ttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||||||||||||||||| || |||||||||||||||    
T  19800454 ttttcagcttattttcataatttttctaggatagcttat 19800492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 3525217 - 3525176
Alignment:
Q  57 gaagagtttatggaaacaatttatgacatatccataagctct 98  Q
    |||||||||||||||| | |||||||||| ||||||||||||    
T  3525217 gaagagtttatggaaatagtttatgacatgtccataagctct 3525176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 34404722 - 34404767
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattct 122  Q
    ||||||||| | |||||||| |||||||| ||||||||||||||||    
T  34404722 ttatgacatgtacataagctgttttcagcatattttcataaattct 34404767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 34939604 - 34939527
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||| |||||||||||| ||||||||  ||| |||| | |||||||||||||| |||||  |||  ||||||||||||    
T  34939604 agagcttatggaaacaacttatgacacgtccgtaagttgttttcagcttatttccataacctcttcaggatagcttat 34939527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 2117489 - 2117417
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||| ||||||||||||| ||| || ||||||| |||| |||||||||  ||||  ||||||||||| |||||    
T  2117489 ttatagaaacaatttatggcatgtctataagctgtttttagcttatttcaataagctctctaggataacttat 2117417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 5329064 - 5329000
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctc 123  Q
    |||||||||||||| || |||||  || ||||||||||  ||||| |||||||||||||| ||||    
T  5329064 agagtttatggaaataacttatgttatgtccataagctgctttcatcttattttcataaactctc 5329000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 20368164 - 20368236
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||| |||||| ||||||||| | ||||||||  ||||| ||||||||||||| ||||| | || |||||||    
T  20368164 ttatgaaaacaacttatgacatgttcataagctagtttcaacttattttcataagttctccaagaaagcttat 20368236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 31624176 - 31624108
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagc 132  Q
    ||||| |||||  ||||||||| | |||||||| |||||| ||||||||||||| ||||| | ||||||    
T  31624176 ttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataatttctccaagatagc 31624108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 32925149 - 32925221
Alignment:
Q  65 tatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    |||||||| |||||||||||| |||||||||  |||  |||||||||| |||| ||| |||  ||||||||||    
T  32925149 tatggaaataatttatgacatgtccataagcggtttatagcttatttttataagttcgctaatatagcttata 32925221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 34538219 - 34538275
Alignment:
Q  81 gacatatccataagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    ||||| ||||||| || ||||||||||||||  | ||| ||||||||||||||||||    
T  34538219 gacatgtccataaactattttcagcttatttatacaaactctctaggatagcttata 34538275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 33185937 - 33186014
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    |||||||||| |||||| ||||||||| ||||||| || |||||| ||||||| |||| || |||||||||||||||||    
T  33185937 agagtttatgaaaacaaattatgacatttccataacctgttttcaacttatttacatatat-ctctaggatagcttata 33186014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 27820205 - 27820254
Alignment:
Q  89 cataagctcttttcagcttattttcataaattctctaggatagcttatac 138  Q
    |||||||| ||||||||||||||||||||||||| || ||||||||||||    
T  27820205 cataagctattttcagcttattttcataaattctttaagatagcttatac 27820254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 3224496 - 3224436
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    ||||||||| |||||||| | || ||||||||||||||||| |||||||| ||||||||||    
T  3224496 ttatgacatgtccataagttgttctcagcttattttcataagttctctagaatagcttata 3224436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 7761596 - 7761648
Alignment:
Q  65 tatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||||||||||||||||||| |||||||| | ||||||||||||||| ||||    
T  7761596 tatggaaacaatttatgacatgtccataagtttttttcagcttattttgataa 7761648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 11695946 - 11695894
Alignment:
Q  65 tatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||||||||| |||||||||| |||||||||| |||||| |||||||||||||    
T  11695946 tatggaaacagtttatgacatgtccataagctgttttcaacttattttcataa 11695894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 27820346 - 27820394
Alignment:
Q  89 cataagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    |||||||| |||||||||||||||||||||||||| | |||||||||||    
T  27820346 cataagctattttcagcttattttcataaattctccaagatagcttata 27820394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 33975643 - 33975543
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatcttttgttatagaa 176  Q
    |||||| || ||||||| || ||||||||||||||||||||  |||||||||||| | ||||||||| ||| ||  |||| ||||  ||||| |||||||    
T  33975643 ttatgatatgtccataaactattttcagcttattttcataagctctctaggatagttcatacgaaaacagtttgattttattttactttttgctatagaa 33975544  T
Q  177 a 177  Q
    |    
T  33975543 a 33975543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 601100 - 601014
Alignment:
Q  91 taagctcttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatcttttgttatagaaat 178  Q
    |||||| ||||||||||||||||||||| |||| |||||||| |||| ||||| |   || ||||| ||||| |||||||||||||||    
T  601100 taagctattttcagcttattttcataaactctccaggatagcatatatgaaaacaacttgactttattttat-ttttgttatagaaat 601014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 7136995 - 7137054
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||||| |||||| | |||||||||||||||||||| ||||| | ||||||||||    
T  7136995 ttatgacatattcataagttattttcagcttattttcataagttctccaagatagcttat 7137054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 11639393 - 11639472
Alignment:
Q  57 gaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||| ||||| |||||  ||||||||| |||||||||| |||| |||||||||||||||  ||||||| ||| |||||    
T  11639393 gaagagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagctctctagaataacttat 11639472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 29007784 - 29007835
Alignment:
Q  128 atagcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    |||||||||| ||||||||| || ||||||||| ||||||||||||||||||    
T  29007784 atagcttatatgaaaatagtttgactttaatttttcttttgttatagaaata 29007835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 31294513 - 31294572
Alignment:
Q  72 acaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatag 131  Q
    |||| |||||||| |||||||||||||||||| |||||||||||||  |||||| |||||    
T  31294513 acaacttatgacacatccataagctcttttcaacttattttcataagctctctatgatag 31294572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 45975751 - 45975704
Alignment:
Q  89 cataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||||| |||||||||||||||||||||||||| | ||||||||||    
T  45975751 cataagctgttttcagcttattttcataaattctccaagatagcttat 45975704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 51695504 - 51695551
Alignment:
Q  89 cataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||||| |||||||||||||||||||||||||| | ||||||||||    
T  51695504 cataagctattttcagcttattttcataaattctccaagatagcttat 51695551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 27140569 - 27140491
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    |||||||| |||||||  ||||||||| |||||||| | |||||||||||||| |||||  |||| | |||||||||||    
T  27140569 agagtttaaggaaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttata 27140491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 15360896 - 15360845
Alignment:
Q  128 atagcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    |||||||||| ||||| ||| || ||||| ||||||||||||||||||||||    
T  15360896 atagcttatatgaaaacagtttgactttattttatcttttgttatagaaata 15360845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 17628685 - 17628638
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattt 111  Q
    |||||||||||| ||||||||| |||||||||| |||||||| |||||    
T  17628685 ttatggaaacaacttatgacatgtccataagctgttttcagcatattt 17628638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 25479654 - 25479595
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||| | ||| || | ||||||||||||||||||||  |||||||||||||||||    
T  25479654 ttatgacatgttcattagttgttttcagcttattttcataagctctctaggatagcttat 25479595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 28689440 - 28689515
Alignment:
Q  68 ggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaa 143  Q
    |||||||  ||||||||| |||||||| | ||||||||||||||||||||  | || | ||||||||||| |||||    
T  28689440 ggaaacagcttatgacatgtccataagttgttttcagcttattttcataagctttccaagatagcttatatgaaaa 28689515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 34290309 - 34290250
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||||| |||||| | |||||||||||||||||||| ||||  | ||||||||||    
T  34290309 ttatgacatattcataagttgttttcagcttattttcataagttcttcaagatagcttat 34290250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 44936658 - 44936709
Alignment:
Q  128 atagcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    |||||||||| ||||||||| || |||||  |||||||||||||||||||||    
T  44936658 atagcttatatgaaaatagtttgactttatcttatcttttgttatagaaata 44936709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 4276704 - 4276762
Alignment:
Q  128 atagcttatacgaaaatagtatggctttaatttatcttttgttatagaaatattttata 186  Q
    |||||||||  ||||| |||||| |||||  ||||||||||||||||||||| ||||||    
T  4276704 atagcttatgtgaaaacagtatgactttatattatcttttgttatagaaatagtttata 4276762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 4549313 - 4549263
Alignment:
Q  67 tggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||||||||||||||||| || ||||| | |||||||||||||| |||||    
T  4549313 tggaaacaatttatgacatgtctataagttgttttcagcttatttccataa 4549263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 19412576 - 19412634
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||||||||||||||| ||||||||| ||||||||||  |||  |||||||| |||||    
T  19412576 agagtttatggaaacaacttatgacatgtccataagctgattttggcttatttccataa 19412634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 6279490 - 6279413
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||| ||||||||||| || |  |||| |||||||| | |||||||| ||||| |||||  |||||||||||||||||    
T  6279490 agagcttatggaaacagttaaccacatgtccataagttgttttcagcgtatttccataagctctctaggatagcttat 6279413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 15438054 - 15437981
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagc 132  Q
    |||| |||||||||||| ||||||||| | |||||| |  ||||||||||||| | |||| |||| ||||||||    
T  15438054 agaggttatggaaacaacttatgacatgttcataagttactttcagcttatttccgtaaactctcgaggatagc 15437981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 24146298 - 24146378
Alignment:
Q  98 ttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    |||| ||||||||| |||||| |||| |||||||| |||| ||||||||| ||  ||| ||||  |||||||||||||||||    
T  24146298 tttttagcttatttccataaactctcaaggatagcgtatatgaaaatagtttga-tttcatttgacttttgttatagaaata 24146378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 28083274 - 28083346
Alignment:
Q  61 agtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||||| |||||| |||| |||||||||||   | ||||||||||||||||||||  ||| |||||||| ||||    
T  28083274 agtttatgaaaacaacttatcacatatccata---ttttttcagcttattttcataagctctttaggatagattat 28083346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 28768097 - 28768036
Alignment:
Q  129 tagcttatacgaaaatagtatggctttaatttatcttttgttatagaaatattttatatata 190  Q
    ||||||||||||||||||| ||  |||| |||||||| ||||||  ||||| ||||||||||    
T  28768097 tagcttatacgaaaatagtttgattttattttatcttctgttatcaaaataatttatatata 28768036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 33722380 - 33722457
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||| |||| ||  ||||||||||| ||||| | |||||||||||||| |||||  ||| ||||||| |||||    
T  33722380 agagtttatagaaataacatatgacatatctataagttgttttcagcttatttccataacctctgtaggataacttat 33722457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 37593676 - 37593721
Alignment:
Q  72 acaatttatgacatatccataagctcttttcagcttattttcataa 117  Q
    |||| ||||||||| | |||||||| ||||||||||||||||||||    
T  37593676 acaacttatgacatgttcataagctgttttcagcttattttcataa 37593721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 37818491 - 37818415
Alignment:
Q  98 ttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    |||||||||||||| ||||| ||||||||||     |||||||||||||| || |||   ||||||| ||||||||||||||    
T  37818491 ttttcagcttatttccataagttctctagga-----tatacgaaaatagtttgacttcgttttatctcttgttatagaaata 37818415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 38160041 - 38160086
Alignment:
Q  99 tttcagcttatttt-cataaattctctaggatagcttatacgaaaa 143  Q
    |||||||||||||| ||||||||||| | |||||||||||||||||    
T  38160041 tttcagcttatttttcataaattctccaagatagcttatacgaaaa 38160086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 46499852 - 46499973
Alignment:
Q  58 aagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttatacgaaaatagtatggctttaa 157  Q
    ||||||||||||||||   ||||||||| ||| ||| || |||| | |||||||||||||  |||| | || |||||| |  |||| | | || |||||     
T  46499852 aagagtttatggaaacggcttatgacatgtccctaaactgttttaaccttattttcataagctctccatgaaagcttaaataaaaacaatttgactttat 46499951  T
Q  158 tttatcttttgttatagaaata 179  Q
    |||||||||| |||||||||||    
T  46499952 tttatcttttcttatagaaata 46499973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 1232923 - 1232959
Alignment:
Q  98 ttttcagcttattttcataaattctctaggatagctt 134  Q
    |||||||||||||||||||||||||| | ||||||||    
T  1232923 ttttcagcttattttcataaattctccaagatagctt 1232959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 3597251 - 3597319
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaa 118  Q
    |||||| |||||||| ||  ||| || |||||||||  ||||||||| |||||||||||||| ||||||    
T  3597251 ctgtttggaagagttgataaaaataacttatgacatggccataagctattttcagcttatttccataaa 3597319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 4202148 - 4202184
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttc 113  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  4202148 ttatgacatgtccataagctattttcagcttattttc 4202184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 5082906 - 5082870
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttc 113  Q
    |||||||||||||||||| | ||||||||||||||||    
T  5082906 ttatgacatatccataagttattttcagcttattttc 5082870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 6292566 - 6292526
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataa 117  Q
    ||||||||| | |||||||| ||||||||||||||||||||    
T  6292566 ttatgacatgttcataagctgttttcagcttattttcataa 6292526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 10439777 - 10439705
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatag 131  Q
    |||| ||||| ||||||  |||||||| ||||||| ||  ||||||||||||| |||||| |||| |||||||    
T  10439777 agagcttatgaaaacaaactatgacatgtccataatctgctttcagcttatttccataaactctccaggatag 10439705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 15579582 - 15579514
Alignment:
Q  50 ctgttttgaagagtttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaa 118  Q
    |||||| | |||| || ||||||||| ||||||||| |||||||| | || ||||||||||| ||||||    
T  15579582 ctgtttgggagagcttgtggaaacaacttatgacatgtccataagttgttctcagcttatttccataaa 15579514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 34380536 - 34380484
Alignment:
Q  59 agagtttatggaaacaatttatgacatatccataagctcttttcagcttattt 111  Q
    |||| ||| |||||||  ||||||||| |||||||||| ||||||||||||||    
T  34380536 agagcttacggaaacaggttatgacatttccataagctgttttcagcttattt 34380484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 44422772 - 44422712
Alignment:
Q  77 ttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    ||||||||| ||||||||||   | ||||||||||||||||  |||| |||||||||||||    
T  44422772 ttatgacatgtccataagctgactacagcttattttcataagctctccaggatagcttata 44422712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 51190905 - 51190861
Alignment:
Q  93 agctcttttcagcttattttcataaattctctaggatagcttata 137  Q
    ||||||||||||||||||||||||| ||||  | |||||||||||    
T  51190905 agctcttttcagcttattttcataagttcttcaagatagcttata 51190861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 306412 - 306340
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    |||||||||||  |||||||||  ||||||||| ||||||||||| || |||||  |||||||||||||||||    
T  306412 ttatggaaacagcttatgacatgcccataagctgttttcagcttacttacataagctctctaggatagcttat 306340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 12688 - 12758
Alignment:
Q  64 ttatggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagctt 134  Q
    |||||||||||| ||||||||| |||||||| | |||||||||||  | |||||  |||||| ||||||||    
T  12688 ttatggaaacaacttatgacatgtccataagttgttttcagcttagctccataagctctctaagatagctt 12758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 159959 - 160029
Alignment:
Q  66 atggaaacaatttatgacatatccataagctcttttcagcttattttcataaattctctaggatagcttat 136  Q
    ||||||||| |||||||||| || ||||||  |||||||||||||| || ||  ||| |||||||||||||    
T  159959 atggaaacagtttatgacatgtctataagcagttttcagcttatttccacaagctctttaggatagcttat 160029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 1145 - 1193
Alignment:
Q  131 gcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    ||||||| || |||||| || ||||| ||||||||||||||||||||||    
T  1145 gcttatatgagaatagtttgactttattttatcttttgttatagaaata 1193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 2830 - 2782
Alignment:
Q  131 gcttatacgaaaatagtatggctttaatttatcttttgttatagaaata 179  Q
    ||||||| || |||||| || ||||| ||||||||||||||||||||||    
T  2830 gcttatatgagaatagtttgactttattttatcttttgttatagaaata 2782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University