View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5505_low_1 (Length: 370)
Name: NF5505_low_1
Description: NF5505
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5505_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 47377640 - 47377299
Alignment:
| Q |
19 |
ctcatgtctatttataaccctaacaatcgttaatttgaacaaaataagccatcaacttcttcaaaaatttcatttttatagacattctcgtacgtnnnnn |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47377640 |
ctcatgtctatttataaccctaacaatcgttaatttgaacaaaataagccatcaacttcttcaaaaatttcatttttatagacattctcgtacgtaaaaa |
47377541 |
T |
|
| Q |
119 |
nncaaattgaaagaaatttggtttgacgatagccacacctagtcatgtactgcatccatgctcgaacacccgctcgtttattttaaaaagatga-nnnnn |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47377540 |
aacaaattgaaagaaatttggtttgacgatagccacacctagtcatgtactgcatccatgctcgaacacccgcttgtttattttaaaaagatgatttttt |
47377441 |
T |
|
| Q |
218 |
nnnagtgagcagactacttgnnnnnnnnntagttattgactcannnnnnnnagaagaatgtgtaagatcaactagtttgtgaagagaatttcatatgtaa |
317 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47377440 |
tttagtgagcagactacttg-aaaaaaaatagttattgactcattttttttagaagaatgtgtaagatcaactagtttgtgaagagaatttcatatgtaa |
47377342 |
T |
|
| Q |
318 |
aataattttagagaataatatatcatcacacaccttacctttg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47377341 |
aataattttagagaataatatatcatcacacaccttacctttg |
47377299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 4065854 - 4065933
Alignment:
| Q |
24 |
gtctatttataaccctaacaatcgttaatttgaacaaaataagccatcaacttcttcaaaaatttcatttttatagacat |
103 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||| ||||||||||||||| ||||| || || |||||||| ||||| |||| |
|
|
| T |
4065854 |
gtctatttgtaaccttaacaatggttaattagaacaaaataagccacaaacttttttcaacatttcattcttataaacat |
4065933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 46383557 - 46383630
Alignment:
| Q |
22 |
atgtctatttataaccctaacaatcgttaatttgaacaaaataagccatcaacttcttcaaaaatttcattttt |
95 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| || || | ||||||||| |
|
|
| T |
46383557 |
atgtctatttataaccctaacaattgttaattgagacaaaataagctatcaacttcctctaatacttcattttt |
46383630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 37575562 - 37575624
Alignment:
| Q |
34 |
aaccctaacaatcgttaatttgaacaaaataagccatcaacttcttcaaaaatttcattttta |
96 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||| |||||||||| || |||||||||||| |
|
|
| T |
37575562 |
aaccctgacaattattaattgaaacaaaataagccaccaacttcttctaacatttcattttta |
37575624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 32103978 - 32104025
Alignment:
| Q |
56 |
aacaaaataagccatcaacttcttcaaaaatttcatttttatagacat |
103 |
Q |
| |
|
|||||||| |||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
32103978 |
aacaaaatgagccatgaacttcttcaaacatttcatttttatagacat |
32104025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 46103746 - 46103665
Alignment:
| Q |
21 |
catgtctatttataaccctaacaatcgttaatttgaacaaaataagccatcaacttcttcaaaaatttcatttttatagaca |
102 |
Q |
| |
|
|||||| |||||||||||||||||| | | ||| | ||||||||| || |||||||| || || | |||| ||||||||||| |
|
|
| T |
46103746 |
catgtcaatttataaccctaacaattgctgattgggacaaaataaaccgtcaacttcctctaacacttcacttttatagaca |
46103665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 16492143 - 16492219
Alignment:
| Q |
27 |
tatttataaccctaacaatcgttaatttgaacaaaataagccatcaacttcttcaaaaatttcatttttatagacat |
103 |
Q |
| |
|
||||||||||| ||||||| | ||||||| ||||||||| || |||| ||| || || |||||||| |||||||||| |
|
|
| T |
16492143 |
tatttataaccttaacaattgctaatttggacaaaataaaccgtcaatttcctctaatatttcattcttatagacat |
16492219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University