View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5506-Insertion-1 (Length: 805)
Name: NF5506-Insertion-1
Description: NF5506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5506-Insertion-1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 758; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 8 - 805
Target Start/End: Original strand, 19370368 - 19371165
Alignment:
| Q |
8 |
aaagtagaatattcagccatgtccatttgaatgaccccactcccagccgttcatgatcaatgtctaatgtaagctccagatgagttaaattgtcaaacat |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19370368 |
aaagtagaatattcagccatgtccatttgaatgaccccactcccagccattcatggtcaatgtctaatgtaagctccagatgagttaaattgtcaaacat |
19370467 |
T |
|
| Q |
108 |
gagatgtagtggatagggacatgtctgcatgagttgcgaagacataatattaatgagttgagtaaatcaaaactttcatccttgaaaatcgagagaaata |
207 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19370468 |
gagatgtagtggatagggacatgtctgcatgagttgcaaagacataatattaatgagttgagtaaatcaaaattttcatccttgaaaatcgagagaaata |
19370567 |
T |
|
| Q |
208 |
gcaatttactcccttaaattgaacaatgtgactcaattcataatttttctggtaaacatacatggaatgggtaaattgattatcttaatttaacagacta |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19370568 |
gcaatttactcccttaaattgaacaatgtgactcaattcataatttttctggtaaacatacatggaatgagtaaattgattatcttaatttaacagacta |
19370667 |
T |
|
| Q |
308 |
atgtaatttgctagtattttgtaaatttgataaatatatatacataccacatgtaggcgcagatgctcgacgttatgaagttgcttaaacataatatgcc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19370668 |
atgtaatttgctagtattttgtaaatttgataaatatatatacataccacatgtaggcgcagatgctccacgttatgaagttgcttaaacataatatgcc |
19370767 |
T |
|
| Q |
408 |
gaccggaaatgttagctctaaccaacttggataagtttgtatcattccaaaccaggctacaacctttctttaccactaaatcctttgtttccaactcctg |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19370768 |
gaccggaaatgttagctctaaccaacttggataagtttgtatcattccaaaccaggctacaacctttctttaccactaaatcctttgtttccaactcctg |
19370867 |
T |
|
| Q |
508 |
tagattaggagagccggatagaagtttggtgagatattcaccatctgcaaaagtgatagattccatgtgaagtactttgagcgagggaagatcaacgttt |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19370868 |
tagattaggagagccggatagaagtttggtgagatattcaccatctgcaaaagtgatagattccatgtgaagtactttgagcgagggaagatcaacgttt |
19370967 |
T |
|
| Q |
608 |
gaaacttggttgattgttatcctcttcaatttgaggaatgccaacgttttggaagttagaaggaaagaagacgatttgattatgtggcaatcagagggag |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |
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| T |
19370968 |
gaaacttggttgattgttatcctcttcaatttgaggaatgccaaggttttggaagttagaaggaaagcagacgatttgcttatgtggcaatcagagtgag |
19371067 |
T |
|
| Q |
708 |
agggatggatggttgggttataaagtcgtcgttgaatagcggcataaacaatttcattattggggcaccatttaaggtggactaataggaagggtaga |
805 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19371068 |
agggatggatggttgggttataaagtcgtcgttgaatagcggcataaacaatttcattattggggcaccatttaaggtggactaataggaagggtaga |
19371165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 349 - 450
Target Start/End: Complemental strand, 31211312 - 31211211
Alignment:
| Q |
349 |
acataccacatgtaggcgcagatgctcgacgttatgaagttgcttaaacataatatgccgaccggaaatgttagctctaaccaacttggataagtttgta |
448 |
Q |
| |
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|||||||| |||||||||||||||||| || |||||||| || | ||| ||||||| ||| |||||||||||||||||||| ||||||||| ||||| |
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| T |
31211312 |
acataccatatgtaggcgcagatgctccacattatgaagctgatcaaaataaatatgcaaaccagaaatgttagctctaaccaatttggataagcttgta |
31211213 |
T |
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| Q |
449 |
tc |
450 |
Q |
| |
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|| |
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| T |
31211212 |
tc |
31211211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 557 - 677
Target Start/End: Complemental strand, 50814495 - 50814375
Alignment:
| Q |
557 |
aaagtgatagattccatgtgaagtactttgagcgagggaagatcaacgtttgaaacttggttgattgttatcctcttcaatttgaggaatgccaacgttt |
656 |
Q |
| |
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||||||| |||||| | |||||| ||||| || ||||||||||||||| | ||||| ||| | ||||| |||||||||||||||| ||| ||| |||| |
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| T |
50814495 |
aaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggaacttcgttcaatgttaccctcttcaatttgagggatgtcaaggttt |
50814396 |
T |
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| Q |
657 |
tggaagttagaaggaaagaag |
677 |
Q |
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| T |
50814395 |
tgctagttagaatgaaagaag |
50814375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 557 - 677
Target Start/End: Original strand, 50861369 - 50861489
Alignment:
| Q |
557 |
aaagtgatagattccatgtgaagtactttgagcgagggaagatcaacgtttgaaacttggttgattgttatcctcttcaatttgaggaatgccaacgttt |
656 |
Q |
| |
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||||||| |||||| | |||||| ||||| || ||||||||||||||| | ||||| ||| | ||||| |||||||||||||||| ||| ||| |||| |
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| T |
50861369 |
aaagtgacagattctaagtgaaggacttttagtgagggaagatcaacgaaaggaacttcgttcaatgttaccctcttcaatttgagggatgtcaaggttt |
50861468 |
T |
|
| Q |
657 |
tggaagttagaaggaaagaag |
677 |
Q |
| |
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|| |||||||| |||||||| |
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| T |
50861469 |
tgctagttagaatgaaagaag |
50861489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 484 - 668
Target Start/End: Complemental strand, 39558968 - 39558784
Alignment:
| Q |
484 |
taaatcctttgtttccaactcctgtagattaggagagccggatagaagtttggtgagatattcaccatctgcaaaagtgatagattccatgtgaagtact |
583 |
Q |
| |
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||||||||||| ||||||||||| |||| | ||| |||||||||||||||| ||| || ||| || || ||| || |||||| | |||||| ||| |
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| T |
39558968 |
taaatcctttgcttccaactcctctagaatgggacagccggatagaagtttcatgatgtactcataatgtgggaaaccgacagattctaagtgaaggact |
39558869 |
T |
|
| Q |
584 |
ttgagcgagggaagatcaacgtttgaaacttggttgattgttatcctcttcaatttgaggaatgccaacgttttggaagttagaa |
668 |
Q |
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|| ||| ||||||||| |||| | ||||| ||| | ||||| |||||||||||||||| || ||| ||||||| |||||||| |
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| T |
39558868 |
tttagcaagggaagattaacgaaaggaacttcgttcaatgttacactcttcaatttgaggactgtcaaggttttggtagttagaa |
39558784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 565 - 642
Target Start/End: Complemental strand, 50814760 - 50814683
Alignment:
| Q |
565 |
agattccatgtgaagtactttgagcgagggaagatcaacgtttgaaacttggttgattgttatcctcttcaatttgag |
642 |
Q |
| |
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|||||| | |||||| ||||| ||| |||||||||||||| | ||||||||| | ||||||||||||||||||||| |
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| T |
50814760 |
agattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgag |
50814683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 565 - 642
Target Start/End: Original strand, 50861104 - 50861181
Alignment:
| Q |
565 |
agattccatgtgaagtactttgagcgagggaagatcaacgtttgaaacttggttgattgttatcctcttcaatttgag |
642 |
Q |
| |
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|||||| | |||||| ||||| ||| |||||||||||||| | ||||||||| | ||||||||||||||||||||| |
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| T |
50861104 |
agattctaagtgaaggacttttagcaagggaagatcaacgaaaggaacttggttcaatgttatcctcttcaatttgag |
50861181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 35138583 - 35138540
Alignment:
| Q |
202 |
gaaatagcaatttactcccttaaattgaacaatgtgactcaatt |
245 |
Q |
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|||||||||||||| |||||||||||||||||||| | |||||| |
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| T |
35138583 |
gaaatagcaatttagtcccttaaattgaacaatgttagtcaatt |
35138540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 31135679 - 31135637
Alignment:
| Q |
203 |
aaatagcaatttactcccttaaattgaacaatgtgactcaatt |
245 |
Q |
| |
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||||||||||||| ||| |||||||||||||||||| |||||| |
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| T |
31135679 |
aaatagcaatttagtcctttaaattgaacaatgtgagtcaatt |
31135637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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