View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5506-Insertion-2 (Length: 762)
Name: NF5506-Insertion-2
Description: NF5506
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5506-Insertion-2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 677; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 3 - 762
Target Start/End: Original strand, 23323466 - 23324236
Alignment:
| Q |
3 |
caacattttcaacaataataaccaaaaggagtgtatgccaatccattccatttacaccaattgcagtaactccatttataaaaggagnnnnnnntcatca |
102 |
Q |
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| T |
23323466 |
caacattttcaaccataataaccaaaaggagtgtatgccaatccattccatttacaccaattgcagtaactccatttataaaaggagaaaaaa-tcatca |
23323564 |
T |
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| Q |
103 |
taatcattgatatctttgccgcttagaactagaactagaatcagaactatacttcc------------atgaaccatgaggaacaagattaccagcaaag |
190 |
Q |
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| T |
23323565 |
taatcattgatatctttgccgcttagaactagaactagaatcagaactatacttccatgaattgttccatgaaccatgaggcacatgattaccagcaaag |
23323664 |
T |
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| Q |
191 |
ttaagcattgaagaagctgaacaagttgaggtaacatttgaagaaaacttcggcatagctggaaaagaaaccggatcgattattatagcagcatcattat |
290 |
Q |
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| T |
23323665 |
ttaagcattgaagaagctgaacaagttgaggtaacatttgaagaaaacttcggcatagctggaaaagaaaccgggtcgattattatagcagcatcattat |
23323764 |
T |
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| Q |
291 |
catacactttgatgttcaaaggtggaacttgaatatcattcaaaggaggtggattgctccaagtaggaagtggtccagcaagtagaatagtttgaagcaa |
390 |
Q |
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| T |
23323765 |
catacactttgatgttcaagggtggaacttgaatatcattcaaaggaggtggattgctccaagtaggaagtggtccagcaagtagaatagtttgaagcaa |
23323864 |
T |
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| Q |
391 |
aggaccagcatcaatcacagcttgtaaaagtttacccttttgaggcaaaactttttctttagcaatagaatctatagcaacagttccatgatcagaaact |
490 |
Q |
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| T |
23323865 |
aggaccagcatcaatcacagcttgtaaaagtttacccttttgaggcaaaactttttctttagcaatagaatctatagcaacagttccatgatcagaaact |
23323964 |
T |
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| Q |
491 |
ggcttttcactgggcaccctcaaataattgaagtgttgattttgatgatggttgagataggccatgttggtgtttgaaaactcaggtgaagaaacagttt |
590 |
Q |
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| T |
23323965 |
ggcttttcactgggcaccctcaaataattgaagtgttgattttgatgatgattgagataggccatgttggtgtttgaaaactcaggtgaagaaacagttt |
23324064 |
T |
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| Q |
591 |
caaagaatgaatcgaccggtggagaaccgtgtgagagactgctagattctgtaatgctagggtttgaagagtgaaacattagaggattttcttgttggaa |
690 |
Q |
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| T |
23324065 |
caaagaatgaatcgaccggtggagaaccgtgtgagagactgctagattctgtaatgctagggtttgaagagtgaaacattagaggattttcttgttggaa |
23324164 |
T |
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| Q |
691 |
tccagaaatgaacttgtcttggaaatggattggacttaggttgttcattagtttttgcagctgatttttagc |
762 |
Q |
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| T |
23324165 |
tccagaaatgaacttgtcttggaaatggattggacttgggttgttcattagtttttgcagctgatttttagc |
23324236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 361 - 439
Target Start/End: Original strand, 21010360 - 21010438
Alignment:
| Q |
361 |
tggtccagcaagtagaatagtttgaagcaaaggaccagcatcaatcacagcttgtaaaagtttacccttttgaggcaaa |
439 |
Q |
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| T |
21010360 |
tggtcctgcaagtaaaagggtctgaagcaaaggaccagctttcatcactgcttgtaaaagtttacctttttcaggcaaa |
21010438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 330 - 462
Target Start/End: Original strand, 41159811 - 41159943
Alignment:
| Q |
330 |
tcaaaggaggtggattgctccaagtaggaagtggtccagcaagtagaatagtttgaagcaaaggaccagcatcaatcacagcttgtaaaagtttaccctt |
429 |
Q |
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| T |
41159811 |
tcaaaggaggtggatttttccaagtaggaagtggcccggaaagaacaagattttgaagcaatggaccagcattaattacagcatcaagaagtttaccttt |
41159910 |
T |
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| Q |
430 |
ttgaggcaaaactttttctttagcaatagaatc |
462 |
Q |
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| T |
41159911 |
ttgtggtaacacttttcctcttgcaagagaatc |
41159943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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