View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5507-Insertion-1 (Length: 851)
Name: NF5507-Insertion-1
Description: NF5507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5507-Insertion-1 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 805; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 805; E-Value: 0
Query Start/End: Original strand, 8 - 851
Target Start/End: Original strand, 52421851 - 52422694
Alignment:
| Q |
8 |
gagaatattacaatgaaaaaagtggagcaacatccatcatcatcagtcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaa |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52421851 |
gagaatattacaatgaaaaaagtggagcaacatccatcatcatcagtcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaa |
52421950 |
T |
|
| Q |
108 |
agaccacagtgagacgtacacgctccaagcgtccacgtcttgcaaccttcagctcccatcattcaaccatgcaactcatttcttccacttcctcttttgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52421951 |
agaccacagtgagacgtacacgctccaagcgtccacgtcttgcaaccttcagctcccatcattcaaccatgcaactcatttcttccacttcctcttttgt |
52422050 |
T |
|
| Q |
208 |
aggggagaatatgcaggatagtgttatttccaacaaggcagcgtctacagaaaaatttcctgactctcaaattgcagcaaagaaacaaaagctttcttct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52422051 |
aggggagaatatgcaggatagtgttatttccaacaagggagcgtctacagaaaaatttcctgactctcaaattgcagcaaagaaacaaaagctttcttct |
52422150 |
T |
|
| Q |
308 |
ggagagtccaagaagaacaagaaaacaaaggcgccacttcttgctgctctagaccataatgctttgggacttgtccggcaatgcacgcattgtgaggcga |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52422151 |
ggagagtccaagaagaacaagaaaacaaaggcgccacttcttgctgctctagaccataatgctttgggacttgtccggcaatgcacgcattgtgaggcga |
52422250 |
T |
|
| Q |
408 |
cgaagactccacaatggaggacagggccagaggggccgaaaacactctgcaatgcttgcggtgttcggtacaagtcaggccgactctgccctgaataccg |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52422251 |
cgaagactccacaatggaggacagggccagaggggccgaaaacactctgcaatgcttgcggtgttcggtacaagtcaggccgactctgccctgaataccg |
52422350 |
T |
|
| Q |
508 |
gcctgcggctagctcaactttttctccggatcttcactctaactcacataagaagatccttgaaatgagagtgatgagacgcaaggataataagaattct |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52422351 |
gcctgcggctagctcaactttttctccggatcttcactctaactcacataagaagatccttgaaatgagagtgatgagacgcaaggataataagaattct |
52422450 |
T |
|
| Q |
608 |
ggtattcttgccttggaatacatgtgaagggagaatgatccaagttatggatatttctctctcgtctctttatctagtgtcgcatcttaggnnnnnnnnn |
707 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52422451 |
ggtattcttgccttggaatacatgtgaagggagaatgatccaagttatggatatttctctctcgtctctttatctagtgtcgcgtcttaggttttttttt |
52422550 |
T |
|
| Q |
708 |
aaagaattttacttcttttggtaaacaagtttgggttttatgtgtagtaattttagttcagttaggtaatcaggagtttgtgtcacatatgtcttaggta |
807 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52422551 |
aaagaattttacttcttttggtaaacaagtttgggttttatgtgtagtaattttagttcagttaggtaatcaggagtttgtgtcacgtatgtcttaggta |
52422650 |
T |
|
| Q |
808 |
ttcttgcatgcaagtattaatttcttttcgtattgcttatattc |
851 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52422651 |
ttcttgcatgcaagtattaatttcttttcgtattgcttatattc |
52422694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 387 - 577
Target Start/End: Original strand, 42714493 - 42714683
Alignment:
| Q |
387 |
aatgcacgcattgtgaggcgacgaagactccacaatggaggacagggccagaggggccgaaaacactctgcaatgcttgcggtgttcggtacaagtcagg |
486 |
Q |
| |
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|||||| |||||||||| || |||||||||||||||||| |||| ||| |||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
42714493 |
aatgcatgcattgtgagataaccaagactccacaatggagggcaggtccaatggggccaaaaacactctgcaatgcttgcggtgttcggtacaagtctgg |
42714592 |
T |
|
| Q |
487 |
ccgactctgccctgaataccggcctgcggctagctcaactttttctccggatcttcactctaactcacataagaagatccttgaaatgaga |
577 |
Q |
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|||||| | |||||||||||||||||| ||||| |||| |||| ||| | | | ||||| || || || || ||| |||||||||||||| |
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| T |
42714593 |
ccgacttttccctgaataccggcctgctgctagtccaacgttttgtccagctgtgcactccaattcgcacaaaaaggtccttgaaatgaga |
42714683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 42714381 - 42714450
Alignment:
| Q |
287 |
aagaaacaaaagctttcttctggagagtccaagaagaacaagaaaacaaaggcgccacttcttgctgctc |
356 |
Q |
| |
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||||||| |||||| ||||||||||| |||||||||| ||||||| ||||| ||||||| | |||||| |
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| T |
42714381 |
aagaaaccaaagctctcttctggagaaaccaagaagaaaaagaaaatcaaggcaccacttcctactgctc |
42714450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 21 - 379
Target Start/End: Complemental strand, 14151237 - 14150881
Alignment:
| Q |
21 |
tgaaaaaagtggagcaacatccatcatcatcagtcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaaagaccacagtgag |
120 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| | |||||| ||||||||||||| | ||||||||||| ||| |
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| T |
14151237 |
tgaaaaaagtggagcaacaaccatcatcatcagtctacaaggaggattttgtgctccatgaaagcagtagttcacccactcataaaaagaccacaatgat |
14151138 |
T |
|
| Q |
121 |
acgtacacgctccaagcgtccacgtcttgcaaccttcagctcccatcattcaaccatgcaactcatttcttccacttcctcttttgtaggggagaatatg |
220 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||| ||| || |||||||||||||||||||||| | | ||||||||||||||||||||||||| |
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| T |
14151137 |
acgtacacgctccaagcgtccacgtcctgcaagcttcag--cccctcgttcaaccatgcaactcatttctccaatttcctcttttgtaggggagaatatg |
14151040 |
T |
|
| Q |
221 |
caggatagtgttatttccaacaaggcagcgtctacagaaaaatttcctgactctcaaattgcagcaaagaaacaaaagctttcttctggagagtccaaga |
320 |
Q |
| |
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||| ||||| ||| | | | || | |||| ||||||| ||||| || ||||||||| || ||||||||||||||||||| ||||||||| || | |
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| T |
14151039 |
cagaatagtattagtgttatctcggaggtgtcttcagaaaactttcccga--ctcaaattgtagacaagaaacaaaagctttcttgtggagagtcaaaaa |
14150942 |
T |
|
| Q |
321 |
agaacaagaaaacaaaggcgccacttcttgctgctc---tagaccataatgctttgggactt |
379 |
Q |
| |
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|||| || ||||||||||| |||||| ||||||||| ||||||||||||||||| |||| |
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|
| T |
14150941 |
agaa-aataaaacaaaggcaccacttattgctgctccaggagaccataatgctttggtactt |
14150881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 14150424 - 14150662
Alignment:
| Q |
8 |
gagaatattacaatgaaaaaagtggagcaacatccatcatcatcagtcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaa |
107 |
Q |
| |
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|||||| | ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| | |||||| ||||||||| || ||||| |
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| T |
14150424 |
gagaatctcacagtgaaaaaagtggagcaacaaccatcatcatcggtcaacaaggaggattttgtgctccttgaaagcagtagttcacctgctcatgaaa |
14150523 |
T |
|
| Q |
108 |
agaccacagtgagacgtacacgctccaagcgtccacgtcttgcaaccttcagctcccatcattcaaccatgcaactcatttcttccacttcctcttttgt |
207 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||| |||||||||||||||| | | || |||||||||||||| ||||||| ||| || ||| ||||| |
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| T |
14150524 |
agaccacaatgagacgtacacgcaccaagcgtccacatcttgcaaccttcagcccacctcgttcaaccatgcaacccatttctcccattttctcctttgt |
14150623 |
T |
|
| Q |
208 |
aggggagaatatgcaggatagtgttatttccaacaaggc |
246 |
Q |
| |
|
|| |||||||||||| ||| | |||| ||||| ||||| |
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| T |
14150624 |
agaagagaatatgcagaataatattatctccaataaggc |
14150662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 24482488 - 24482321
Alignment:
| Q |
21 |
tgaaaaaagtggagcaacatccatcatcatcagtcaacaaggaggattttgtgctccctaaaagcaatagttcacccacttgtgaaaagaccacagtgag |
120 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| ||||||||||||||||| ||||||| | |||||| ||||||||||||| ||| |||||| ||| |||| |
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| T |
24482488 |
tgaaaaaagtgaagcaacaaccatcatcatcggtcaacaaggaggatttggtgctccttgaaagcagtagttcacccactggtggaaagactacaatgag |
24482389 |
T |
|
| Q |
121 |
acgtacacgctccaagcgtccacgtcttgcaaccttcagctcccatcattcaaccatgcaactcatttct |
190 |
Q |
| |
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|||||||| ||||||||||||| ||| || ||||| ||||| || || |||||||||||||||||||||| |
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|
| T |
24482388 |
acgtacacactccaagcgtccatgtcatg-aacctgcagcttcc-tcgttcaaccatgcaactcatttct |
24482321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 363 - 444
Target Start/End: Complemental strand, 24480367 - 24480286
Alignment:
| Q |
363 |
ataatgctttgggacttgtccggcaatgcacgcattgtgaggcgacgaagactccacaatggaggacagggccagaggggcc |
444 |
Q |
| |
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|||||||||||| |||||| || |||| || |||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
24480367 |
ataatgctttggtacttgtgaggaaatgtacacattgtgaggcgacgaagactccacaatggaggatagggtcagaggggcc |
24480286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 446 - 510
Target Start/End: Complemental strand, 40377598 - 40377534
Alignment:
| Q |
446 |
aaaacactctgcaatgcttgcggtgttcggtacaagtcaggccgactctgccctgaataccggcc |
510 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| ||| ||||| |||| |||||||||||||| |
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| T |
40377598 |
aaaacgctctgcaatgcttgtggtgttcggtacaggtccggccgcctctatcctgaataccggcc |
40377534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 42419229 - 42419312
Alignment:
| Q |
226 |
tagtgttatttccaacaaggcagcgtctacagaaaaatttcctgactctcaaattgcagcaaagaaacaaaagctttcttctgg |
309 |
Q |
| |
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||||||||| |||| ||||| |||||| |||||| |||||||| |||||||||| ||| | ||||| ||| ||||||||||| |
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| T |
42419229 |
tagtgttatctccaccaaggaggcgtcttaagaaaattttcctgagtctcaaattgtagccatgaaaccaaaactttcttctgg |
42419312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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