View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5507-Insertion-10 (Length: 131)
Name: NF5507-Insertion-10
Description: NF5507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5507-Insertion-10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 2e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 23177514 - 23177391
Alignment:
| Q |
8 |
gttttccattgtttcataatctttgcaatgatatcctttgtggtgtaaggtttatccctcctgtttataacaagttttccgagcaaatacaatttgcaag |
107 |
Q |
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| T |
23177514 |
gttttccattgtttcataatctttgcaatgagatcctttgtggtgtaaggtttatccctcctgtttataacaagttgtccgagcaaatacaatttgcaag |
23177415 |
T |
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| Q |
108 |
acttaacgcctttgacatatgcag |
131 |
Q |
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| T |
23177414 |
acttaacgcctttgacatatgcag |
23177391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 23588771 - 23588648
Alignment:
| Q |
8 |
gttttccattgtttcataatctttgcaatgatatcctttgtggtgtaaggtttatccctcctgtttataacaagttttccgagcaaatacaatttgcaag |
107 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23588771 |
gttttccattgtttcataatctttgcaatgagatcctttgtggtgtaaggtttatccctcctgtttataacaagttgtccgagcaaatacaatttgcaag |
23588672 |
T |
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| Q |
108 |
acttaacgcctttgacatatgcag |
131 |
Q |
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|||||||||||||||||||||||| |
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| T |
23588671 |
acttaacgcctttgacatatgcag |
23588648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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