View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5507-Insertion-2 (Length: 645)

Name: NF5507-Insertion-2
Description: NF5507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5507-Insertion-2
NF5507-Insertion-2
[»] chr2 (1 HSPs)
chr2 (8-645)||(13271225-13271860)


Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 8 - 645
Target Start/End: Original strand, 13271225 - 13271860
Alignment:
Q  8 tgtaggaggtaattccaaaagaatataaatcgttgaatgtgattgtctaagaaactttttgggcaaaccacaacaaactaaatttgaaaacgtgagtgtg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13271225 tgtaggaggtaattccaaaagaatataaatcgttgaatgtgattgtctaagaaactttttgggcaaaccacaacaaactaaatttgaaaacgtgagtgtg 13271324  T
Q  108 atcaaatcaaacccaccaaaacaaatttgagaaagtaattnnnnnnnnnn-cgacttgaattatttctcaaatttgttttacttagttaaattattttgc 206  Q
    ||||||||||||||| ||||||||||||||||||||||||           ||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  13271325 atcaaatcaaacccaacaaaacaaatttgagaaagtaattaaaaaaaaaaacgacttgaattatttctaaaatttgttttgcttagttaaattattttgc 13271424  T
Q  207 tctcaaatgcatccaaataagtagaacataaatttagaataggtataggtgctaataatgattggaatgaattgaatatggggtttagatgatttacaga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13271425 tctcaaatgcatccaaataagtagaacataaatttagaataggtataggtgctaataatgattggaatgaattgaatatggggtttagatgatttacaga 13271524  T
Q  307 gagggaaatgcagaaatgtagaatttgggtggacgaacaaaaaatgttgacaaaaataagaaaccgtggatatagttgcagcataatattgggtttagat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13271525 gagggaaatgcagaaatgtagaatttgggtggacgaacaaaaaatgttgacaaaaataagaaaccgtggatatagttgcagcataatattgggtttagat 13271624  T
Q  407 aattttttgtctattataatagccgtaactcgtaagattgatggaacggtggatatagtagcagcagcatacactgcagtagatggtataaggttgttaa 506  Q
    || ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13271625 aa-tttttgtctattataatagc-------cgtaagattgatggaacggtggatatagtagcagcagcatacactgaagtagatggtataaggttgttaa 13271716  T
Q  507 gaagaccttttcatggaaacagt-------caaacatgtctaatcattttgataaaggttggacgggaccagtttgtcattcaaactttattgnnnnnnn 599  Q
    |||||||||||||||||||||||       |||||||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||           
T  13271717 gaagaccttttcatggaaacagtcaaacagcaaacatgtccaatcattatgat-aaggttggacaggaccagtttgtcattcaaactttattgtttttgt 13271815  T
Q  600 nnnnnatttataaaaatccaaactttttatgcaaattgatcccttc 645  Q
         |||||||||||||||||| ||||||||||||||||||||||    
T  13271816 tttttatttataaaaatccaaac-ttttatgcaaattgatcccttc 13271860  T

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