View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5507-Insertion-4 (Length: 481)
Name: NF5507-Insertion-4
Description: NF5507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5507-Insertion-4 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 8 - 481
Target Start/End: Complemental strand, 2222531 - 2222058
Alignment:
| Q |
8 |
tcatcatcatcaacaagaacaacaccaccacagcttcaaagtttctgttactcttcaccttcttcatctgaacttgaaccttcaacaacaccggaagaag |
107 |
Q |
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| T |
2222531 |
tcatcatcatcaacaagaacaacaccaccacagcttcaaagtttctgttactcttcaccttcttcatctgaacttgaaccttcaacaacaccggaagaag |
2222432 |
T |
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| Q |
108 |
aagaaatagtaacaaaactcagaaaccatgaattggttatagtagaagaaggtttaatctcactcagaaaaatcacaagaacgaatttggaaagtagagt |
207 |
Q |
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| T |
2222431 |
aagaaatagtaacaaaactcagaaaccatgaattggttatagtagaagaaggtttaatctcactcagaaaaatcacaagaacgaatttggaaagtagagt |
2222332 |
T |
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| Q |
208 |
tcaactttgcaccaatagggtactatgttttctgcgttctttgattttgtctaagaacgaggttgtaagagtcaatgcacttgcctcattggtcaacctt |
307 |
Q |
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| T |
2222331 |
tcaactttgcagcaatagggtactatgttttctgcgttctttgattttgtctaagaacgaggttgtaagagtcaatgcacttgcttcattggtcaacctt |
2222232 |
T |
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| Q |
308 |
tcacttgagaaagttaacaaagtgaagatagtccggtcaggaattgttccaccgttgattgaggttttgaggtttgggtcgtgtgaatcgcaggaacatg |
407 |
Q |
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| T |
2222231 |
tcacttgagaaagttaacaaagtgaagatagtccggtcaggaattgttccaccgttgattgaggttttgaggtttggatcgtgtgaatcgcaggaacatg |
2222132 |
T |
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| Q |
408 |
cttcgtgtgcgatgtttagtttagcgcttgatgatgataataaaactgcgattggtgttttaggtgctcttttg |
481 |
Q |
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| T |
2222131 |
cttcgtgtgcgatgtttagtttagcgcttgatgatgataataaaactgcgattggtgttttaggtgctcttttg |
2222058 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 475
Target Start/End: Complemental strand, 35294456 - 35294371
Alignment:
| Q |
390 |
gtgaatcgcaggaacatgcttcgtgtgcgatgtttagtttagcgcttgatgatgataataaaactgcgattggtgttttaggtgct |
475 |
Q |
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|||||||||||||||||||| || ||||| |||||||||| || | |||||||||||||| | || ||||||||| | |||||| |
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| T |
35294456 |
gtgaatcgcaggaacatgctgcgggtgcgttgtttagtttggctttggatgatgataataagatggcaattggtgttcttggtgct |
35294371 |
T |
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