View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5507-Insertion-5 (Length: 323)
Name: NF5507-Insertion-5
Description: NF5507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5507-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 298
Target Start/End: Complemental strand, 12959006 - 12958714
Alignment:
| Q |
8 |
ctatcatgatattgaagtctcacttttaaagtgttacttgcaataccacaacagatgatttaattggaagctctaagtgccacccgatttgcaacttcag |
107 |
Q |
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| T |
12959006 |
ctatcatgatattgaaatcttacttttaaagtgttacttacaatgccacaatagatgatttgatgggaagctctaagtgccacccgatttgcaactccat |
12958907 |
T |
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| Q |
108 |
tttcgcccgcgaaaacaacaaaacttgtggctcgatggctgacatagcaaagaaatcccaattttatatattaaactttttggctgtgtgtattgacttt |
207 |
Q |
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| T |
12958906 |
tttcgcccgcgaaaacaacaaaacttgtggcttgatggcttacatagcaaagaaatcccaattttatatattaaactttttggctgtgtgtattgacttt |
12958807 |
T |
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| Q |
208 |
aaacgatgtgggacttcttcagcctctaccacattttacaactccaacccctttgtccttctcttt-aagaat-gatcacaccattgcctcac |
298 |
Q |
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| T |
12958806 |
aaacgatgtgggactttttcagcctctaccacattttacaactccaacccctttgtccttctctttaaagaatggatcacaccattgcctcac |
12958714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 129 - 278
Target Start/End: Original strand, 13866813 - 13866960
Alignment:
| Q |
129 |
aacttgtggctcgatggctgacatagcaaagaaatcccaattttatatattaaactttttggctgtgtgtattgactttaaacgatgtgggacttcttca |
228 |
Q |
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| T |
13866813 |
aacttgaggcttgatgccttacaaagtaaagaaaatccaattttatat--tgaactttctggctgtgtgttctgactttaaaggatgtgggacttcttca |
13866910 |
T |
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| Q |
229 |
gcctctaccacattttacaactccaacccctttgtccttctctttaagaa |
278 |
Q |
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| T |
13866911 |
gcctctaccagtttttacaactccaacctctttgtccttctctttaagaa |
13866960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 13864942 - 13865151
Alignment:
| Q |
8 |
ctatcatgatattgaagtctcacttttaaagtgttacttgcaataccacaacagatgatttaattggaagctctaagtgccacccgatttgcaac----- |
102 |
Q |
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| T |
13864942 |
ctatcatgatattgaagtctcacttttaaagtgtgaccatgaacagcataatagatgatttgatgggaagctctaaatgccacccaatttacaaccccag |
13865041 |
T |
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| Q |
103 |
-ttcagtttcgcccgcgaaaacaacaaaacttgtggctcgatggct---gacatagcaaagaaatcccaattttatatattaaactttttggctgtgtgt |
198 |
Q |
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| T |
13865042 |
tttcactttcacccgtgaaaacaataaaacttgtggcttgatggcttactacatagcaaagaattcccaattt--tatattaaactttttggctgcgttt |
13865139 |
T |
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| Q |
199 |
attgactttaaa |
210 |
Q |
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| T |
13865140 |
attgaatttaaa |
13865151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 323
Target Start/End: Original strand, 13865154 - 13865197
Alignment:
| Q |
280 |
gatcacaccattgcctcacaatgttatgcttatcttatatttat |
323 |
Q |
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| T |
13865154 |
gatcaaaccattgcttcacaatgttatgcttatcttatatttat |
13865197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 48708624 - 48708578
Alignment:
| Q |
181 |
aactttttggctgtgtgtattgactttaaacgatgtgggacttcttc |
227 |
Q |
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| T |
48708624 |
aactttctggctgtgtgtattgactttaaacgatgttggacttcttc |
48708578 |
T |
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