View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5507_low_1 (Length: 295)

Name: NF5507_low_1
Description: NF5507
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5507_low_1
NF5507_low_1
[»] chr4 (23 HSPs)
chr4 (49-197)||(22315725-22315873)
chr4 (131-182)||(24404213-24404264)
chr4 (132-199)||(16844825-16844892)
chr4 (134-197)||(17353605-17353668)
chr4 (132-194)||(54083479-54083541)
chr4 (132-185)||(1105443-1105496)
chr4 (132-189)||(24969250-24969307)
chr4 (132-197)||(38352490-38352554)
chr4 (148-197)||(54779441-54779490)
chr4 (131-188)||(55255089-55255146)
chr4 (132-188)||(10431443-10431499)
chr4 (132-196)||(32128394-32128457)
chr4 (148-200)||(35780573-35780625)
chr4 (147-197)||(37777475-37777525)
chr4 (131-181)||(38209841-38209891)
chr4 (132-181)||(40089340-40089389)
chr4 (147-199)||(2790990-2791042)
chr4 (147-183)||(5128999-5129035)
chr4 (132-188)||(17679226-17679282)
chr4 (148-192)||(27596656-27596700)
chr4 (147-183)||(45560720-45560756)
chr4 (132-188)||(47127990-47128046)
chr4 (132-188)||(48208459-48208515)
[»] chr7 (20 HSPs)
chr7 (196-277)||(30415996-30416077)
chr7 (57-197)||(47115672-47115813)
chr7 (132-197)||(47985203-47985268)
chr7 (132-197)||(24525919-24525984)
chr7 (147-198)||(19691896-19691947)
chr7 (132-182)||(20091515-20091565)
chr7 (132-198)||(38415109-38415175)
chr7 (132-196)||(25010254-25010318)
chr7 (132-183)||(28749595-28749646)
chr7 (138-181)||(31453706-31453749)
chr7 (132-183)||(48984078-48984129)
chr7 (139-185)||(20152912-20152958)
chr7 (139-185)||(26918031-26918077)
chr7 (134-187)||(7398166-7398219)
chr7 (147-188)||(12596445-12596486)
chr7 (131-188)||(18777018-18777075)
chr7 (137-178)||(27237763-27237804)
chr7 (133-194)||(44601389-44601450)
chr7 (133-194)||(44601557-44601618)
chr7 (133-194)||(44601725-44601786)
[»] chr2 (20 HSPs)
chr2 (131-198)||(30175518-30175585)
chr2 (131-197)||(21190926-21190992)
chr2 (131-197)||(45156347-45156413)
chr2 (131-197)||(25192754-25192820)
chr2 (132-197)||(26715931-26715996)
chr2 (132-199)||(24410234-24410301)
chr2 (134-188)||(36949286-36949340)
chr2 (132-197)||(9045832-9045897)
chr2 (132-197)||(27506976-27507041)
chr2 (137-187)||(29694094-29694144)
chr2 (131-188)||(3155012-3155069)
chr2 (131-188)||(6964801-6964858)
chr2 (137-193)||(21258491-21258547)
chr2 (132-183)||(3952913-3952964)
chr2 (134-192)||(21666036-21666094)
chr2 (131-188)||(4505688-4505745)
chr2 (131-188)||(34693156-34693213)
chr2 (131-188)||(34715568-34715625)
chr2 (148-188)||(7162686-7162726)
chr2 (132-188)||(12337690-12337746)
[»] chr6 (14 HSPs)
chr6 (131-194)||(11081683-11081746)
chr6 (132-201)||(17353755-17353824)
chr6 (132-197)||(19986966-19987031)
chr6 (132-199)||(20711953-20712020)
chr6 (137-187)||(20611514-20611564)
chr6 (132-193)||(27788923-27788984)
chr6 (147-200)||(235475-235528)
chr6 (132-183)||(23070890-23070941)
chr6 (131-188)||(13727649-13727706)
chr6 (147-188)||(19741239-19741280)
chr6 (147-188)||(21280342-21280383)
chr6 (131-188)||(21479293-21479350)
chr6 (147-188)||(27314780-27314821)
chr6 (132-181)||(30832668-30832717)
[»] chr5 (15 HSPs)
chr5 (49-195)||(4931793-4931938)
chr5 (131-197)||(34855925-34855990)
chr5 (92-197)||(34221158-34221261)
chr5 (132-197)||(16199027-16199092)
chr5 (136-197)||(24395445-24395506)
chr5 (132-198)||(38869594-38869660)
chr5 (132-197)||(27923885-27923950)
chr5 (132-188)||(15480230-15480286)
chr5 (132-188)||(19523102-19523158)
chr5 (131-183)||(34756614-34756666)
chr5 (132-183)||(16799557-16799608)
chr5 (149-188)||(30853275-30853314)
chr5 (147-197)||(40389781-40389831)
chr5 (147-188)||(31881606-31881647)
chr5 (132-188)||(36188020-36188076)
[»] chr3 (19 HSPs)
chr3 (92-174)||(50483361-50483442)
chr3 (132-201)||(43207475-43207544)
chr3 (132-197)||(53507118-53507183)
chr3 (132-198)||(44708281-44708347)
chr3 (147-197)||(48156942-48156992)
chr3 (132-197)||(34290875-34290940)
chr3 (131-198)||(6937588-6937655)
chr3 (147-198)||(9878935-9878986)
chr3 (131-201)||(36716275-36716345)
chr3 (131-188)||(38681347-38681404)
chr3 (132-197)||(50939469-50939534)
chr3 (131-188)||(54619453-54619510)
chr3 (131-183)||(27078818-27078870)
chr3 (131-183)||(27084615-27084667)
chr3 (132-188)||(50258735-50258791)
chr3 (148-179)||(33426368-33426399)
chr3 (132-178)||(23641464-23641510)
chr3 (147-188)||(3954868-3954909)
chr3 (132-181)||(36605862-36605911)
[»] chr1 (18 HSPs)
chr1 (131-197)||(5128247-5128313)
chr1 (132-198)||(9173256-9173322)
chr1 (132-197)||(1367112-1367177)
chr1 (132-197)||(13913717-13913782)
chr1 (132-201)||(39135063-39135132)
chr1 (132-197)||(40502025-40502090)
chr1 (147-198)||(44895466-44895517)
chr1 (132-197)||(17168769-17168834)
chr1 (131-188)||(44655548-44655605)
chr1 (132-188)||(6771705-6771761)
chr1 (132-188)||(14146214-14146270)
chr1 (131-183)||(27906948-27907000)
chr1 (152-197)||(23181711-23181756)
chr1 (147-188)||(41697295-41697336)
chr1 (132-188)||(6888478-6888534)
chr1 (149-197)||(10912112-10912160)
chr1 (140-180)||(50146055-50146095)
chr1 (131-199)||(51607673-51607741)
[»] chr8 (13 HSPs)
chr8 (132-199)||(42600582-42600649)
chr8 (131-193)||(18808694-18808755)
chr8 (134-179)||(9107804-9107849)
chr8 (131-188)||(2952472-2952529)
chr8 (131-188)||(5860995-5861052)
chr8 (131-183)||(3048773-3048825)
chr8 (137-177)||(5973367-5973407)
chr8 (132-188)||(20003877-20003933)
chr8 (132-178)||(5721444-5721490)
chr8 (147-197)||(10917194-10917244)
chr8 (132-190)||(23606856-23606914)
chr8 (132-201)||(23798496-23798565)
chr8 (131-180)||(30883127-30883176)
[»] scaffold0039 (1 HSPs)
scaffold0039 (132-197)||(106379-106444)
[»] scaffold0027 (1 HSPs)
scaffold0027 (149-211)||(4135-4197)
[»] scaffold0070 (1 HSPs)
scaffold0070 (147-188)||(1020-1061)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 49 - 197
Target Start/End: Original strand, 22315725 - 22315873
Alignment:
Q  49 ccactaggccacttccgcaaatgtgaaatttaacactcgctctatatatttaatattttttaactgggctataannnnnnnnatgaggcccataccttag 148  Q
    |||||||||||||||| ||||| |||  |||||||||||||||||||||||||||||| |||||||||||||||        ||||||| |||||||| |    
T  22315725 ccactaggccacttccacaaatatgatgtttaacactcgctctatatatttaatatttgttaactgggctataattttttttatgaggctcataccttgg 22315824  T
Q  149 ggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  22315825 ggaggtccagctccattgagctgtttgcaccccctaagggccgagcctg 22315873  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 24404264 - 24404213
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccc 182  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24404264 atgaggcccataccttggggaggcccagctccattgagctgtttgcaccccc 24404213  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 16844892 - 16844825
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgat 199  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |  ||||||||||||    
T  16844892 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcatagccgggcctgat 16844825  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 17353668 - 17353605
Alignment:
Q  134 aggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    |||| ||||| || ||||||| ||||||||||||||||||||||||||| |||||  |||||||    
T  17353668 aggctcatacattggggaggctcagctccattgagctgtttgcaccccccaagggttgggcctg 17353605  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 54083479 - 54083541
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggc 194  Q
    ||||||||||  || ||||| ||||||||| ||||||||||||||||||||| |||| |||||    
T  54083479 tgaggcccatgactgagggatgcccagctctattgagctgtttgcaccccctcagggacgggc 54083541  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 1105496 - 1105443
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaa 185  Q
    |||||||||| | | |||||||||||||||  ||||||||||||||||||||||    
T  1105496 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctaa 1105443  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 24969307 - 24969250
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggc 189  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||||    
T  24969307 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggc 24969250  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 38352490 - 38352554
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  || |||||||||||||||  |||||||||||||| ||||| |||||||||||||    
T  38352490 tgaggcccatgactaagggaggcccagctctgttgagctgtttgca-cccctcagggccgggcctg 38352554  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 54779490 - 54779441
Alignment:
Q  148 gggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||||||  ||||||||||||||| |||| |||||||||||||    
T  54779490 gggaggcccagctcggttgagctgtttgcactccctcagggccgggcctg 54779441  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 55255146 - 55255089
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  55255146 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 55255089  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 10431443 - 10431499
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  10431443 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 10431499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 32128457 - 32128394
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcct 196  Q
    ||||| ||||| || |||||||||||||||  |||||||||||||||||||| | ||||||||||    
T  32128457 tgaggtccataactgagggaggcccagctctgttgagctgtttgcaccccctca-ggccgggcct 32128394  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 35780573 - 35780625
Alignment:
Q  148 gggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgatt 200  Q
    ||||||||||||||  ||||||||||||||||||||  | |||||||||||||    
T  35780573 gggaggcccagctcggttgagctgtttgcaccccctcggagccgggcctgatt 35780625  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 37777475 - 37777525
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||| |||||||  |||||||||||||||||||| | |||||||||||    
T  37777475 agggaggtccagctctgttgagctgtttgcaccccctcaaggccgggcctg 37777525  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 38209841 - 38209891
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcacccc 181  Q
    ||||||||||| | | |||||||||||||||  ||||||||||||||||||    
T  38209841 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 38209891  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 40089389 - 40089340
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcacccc 181  Q
    ||||||||||  || |||||||||||||||  ||||||||||||||||||    
T  40089389 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccc 40089340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 2790990 - 2791042
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgat 199  Q
    |||||| ||||||||  |||||||||||||||||||| || | ||||||||||    
T  2790990 agggagacccagctctgttgagctgtttgcaccccctcagagtcgggcctgat 2791042  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 5128999 - 5129035
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccct 183  Q
    |||||||||||||||  ||||||||||||||||||||    
T  5128999 agggaggcccagctcgtttgagctgtttgcaccccct 5129035  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 17679282 - 17679226
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||| | | |||||||| ||||||  |||||||||||||||||||| ||||    
T  17679282 tgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccctcaggg 17679226  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 27596656 - 27596700
Alignment:
Q  148 gggaggcccagctccattgagctgtttgcaccccctaagggccgg 192  Q
    ||||||||||||||  |||||||||| ||||||||| ||||||||    
T  27596656 gggaggcccagctcgtttgagctgttcgcaccccctcagggccgg 27596700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 45560720 - 45560756
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccct 183  Q
    |||||||||||||||  ||||||||||||||||||||    
T  45560720 agggaggcccagctcgtttgagctgtttgcaccccct 45560756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 47128046 - 47127990
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||| | | |||||||||||||||  ||| |||||||||||||||| ||||    
T  47128046 tgaggcccatccttgagggaggcccagctcgtttgggctgtttgcaccccctcaggg 47127990  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 48208515 - 48208459
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||| | | ||||||||||| |||  |||||||||||||||||||| ||||    
T  48208515 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcaggg 48208459  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 196 - 277
Target Start/End: Complemental strand, 30416077 - 30415996
Alignment:
Q  196 tgattacaatacaacaaacatgtataaacttgacccagcttctttttccttaagagttaataagatttgttttacagttgac 277  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30416077 tgattacaatacaacaaacatggataaacttgacccagcttctttttccttaagagttaataagatttgttttacagttgac 30415996  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 47115813 - 47115672
Alignment:
Q  57 ccacttccgcaaatgtgaaatttaacactcgctctatatatttaatattttttaactgggctataannnnnnnna-tgaggcccataccttagggaggcc 155  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||||||||||| |||        | |||||| ||||||||| ||||| |    
T  47115813 ccacttccgcaaatatgatatttatcactcgctctatatatttaatatttcttaactgggctgtaattttttttaatgaggctcataccttaaggaggtc 47115714  T
Q  156 cagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    || |||||||||||||||||||||||||||||||||||||||    
T  47115713 caactccattgagctgtttgcaccccctaagggccgggcctg 47115672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 47985203 - 47985268
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  47985203 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 47985268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 24525919 - 24525984
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| ||||| |||||||    
T  24525919 tgaggcccatgactaagggaggcccagctctgttgagctgtttgcaccccctcagggctgggcctg 24525984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 19691947 - 19691896
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 198  Q
    |||||||||||||||  |||||||||||||||||||| |||| |||||||||    
T  19691947 agggaggcccagctctgttgagctgtttgcaccccctcagggtcgggcctga 19691896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 20091515 - 20091565
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccc 182  Q
    ||||||||||  || ||||||||||||||| ||||||||||||||||||||    
T  20091515 tgaggcccatgactgagggaggcccagctctattgagctgtttgcaccccc 20091565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 38415109 - 38415175
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 198  Q
    ||||||||||  || |||||||||||||||  |||||||||||||| ||||| || |||||||||||    
T  38415109 tgaggcccatgactaagggaggcccagctctgttgagctgtttgcatcccctcagagccgggcctga 38415175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 25010318 - 25010254
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcct 196  Q
    ||||||||||  || ||||||||||| |||  |||||||||||| ||||||| ||||||||||||    
T  25010318 tgaggcccatgactgagggaggcccaactctgttgagctgtttgtaccccctcagggccgggcct 25010254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 28749646 - 28749595
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 183  Q
    |||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  28749646 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 28749595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 31453706 - 31453749
Alignment:
Q  138 ccataccttagggaggcccagctccattgagctgtttgcacccc 181  Q
    |||||| ||||||||||||| || ||||||||||||||||||||    
T  31453706 ccatactttagggaggcccatctgcattgagctgtttgcacccc 31453749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 48984078 - 48984129
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 183  Q
    ||||||||||  || |||||||||||||||  ||||||||||||||||||||    
T  48984078 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccct 48984129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 20152958 - 20152912
Alignment:
Q  139 cataccttagggaggcccagctccattgagctgtttgcaccccctaa 185  Q
    |||||||||| ||||| ||||||||||||||| ||||||| ||||||    
T  20152958 cataccttagagaggctcagctccattgagctctttgcacaccctaa 20152912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 26918031 - 26918077
Alignment:
Q  139 cataccttagggaggcccagctccattgagctgtttgcaccccctaa 185  Q
    |||||||||| || |||||||||||||||||| ||||||| ||||||    
T  26918031 cataccttagagatgcccagctccattgagctctttgcacaccctaa 26918077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 7398219 - 7398166
Alignment:
Q  134 aggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagg 187  Q
    ||||||||||||| ||||||| |||||||||||||||  |||||| ||| ||||    
T  7398219 aggcccataccttggggaggctcagctccattgagctcgttgcacaccccaagg 7398166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 12596445 - 12596486
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  12596445 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 12596486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 18777018 - 18777075
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||| ||| ||||    
T  18777018 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacctcctcaggg 18777075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 27237763 - 27237804
Alignment:
Q  137 cccataccttagggaggcccagctccattgagctgtttgcac 178  Q
    ||||||||| ||||||||||| |||||||||||| |||||||    
T  27237763 cccatacctcagggaggcccaactccattgagctctttgcac 27237804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 44601450 - 44601389
Alignment:
Q  133 gaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggc 194  Q
    |||||||||| |||  ||||| ||||||| |||||| |||||||||||||| | ||||||||    
T  44601450 gaggcccatatcttgaggaggtccagctctattgagatgtttgcaccccctcaaggccgggc 44601389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 44601618 - 44601557
Alignment:
Q  133 gaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggc 194  Q
    |||||||||| |||  ||||| ||||||| |||||| |||||||||||||| | ||||||||    
T  44601618 gaggcccatatcttgaggaggtccagctctattgagatgtttgcaccccctcaaggccgggc 44601557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 44601786 - 44601725
Alignment:
Q  133 gaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggc 194  Q
    |||||||||| |||  ||||| ||||||| |||||| |||||||||||||| | ||||||||    
T  44601786 gaggcccatatcttgaggaggtccagctctattgagatgtttgcaccccctcaaggccgggc 44601725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 30175585 - 30175518
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 198  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30175585 atgaggcccataccttggggaggcccagctccattgagctgtttgcaccccccaagggccgggcctga 30175518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 21190926 - 21190992
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21190926 atgaggcccataccttggggaggcccagctccattgagctgtttgcaccccccaagggccgggcctg 21190992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 45156347 - 45156413
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  45156347 atgaggcccataccttggggaggcccagctccattgagctgtttgcaccccccaagggccgagcctg 45156413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 25192820 - 25192754
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||    
T  25192820 atgagacccataccttagggaggcctagctccattgagctatttgcacctcctaagggccggacctg 25192754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 26715996 - 26715931
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  26715996 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 26715931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 24410301 - 24410234
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgat 199  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||| ||||||||||    
T  24410301 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacccccttagggacgggcctgat 24410234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 36949286 - 36949340
Alignment:
Q  134 aggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||| |||||| || |||||||||||||||||||||||||||||||| |||||    
T  36949286 aggcccgtaccttgggaaggcccagctccattgagctgtttgcaccccccaaggg 36949340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 9045897 - 9045832
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| ||| |||||||||    
T  9045897 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggaccgggcctg 9045832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 27506976 - 27507041
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||| ||||||||    
T  27506976 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 27507041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 29694144 - 29694094
Alignment:
Q  137 cccataccttagggaggcccagctccattgagctgtttgcaccccctaagg 187  Q
    ||||||||||| |||||||||||||||||||||| ||||||| ||| ||||    
T  29694144 cccataccttaaggaggcccagctccattgagctctttgcacaccccaagg 29694094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 3155069 - 3155012
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  3155069 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 3155012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 6964858 - 6964801
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  6964858 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 6964801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 21258491 - 21258547
Alignment:
Q  137 cccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccggg 193  Q
    ||||||||||  ||||| |||||||||||||| |||||||||||||| | |||||||    
T  21258491 cccataccttgaggaggtccagctccattgagttgtttgcaccccctcaaggccggg 21258547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 3952964 - 3952913
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 183  Q
    |||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  3952964 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 3952913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 21666036 - 21666094
Alignment:
Q  134 aggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgg 192  Q
    ||||||||||||| ||||||||||| |||||||||||  |||||| ||| |||| ||||    
T  21666036 aggcccataccttggggaggcccagttccattgagctccttgcacaccccaaggtccgg 21666094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 4505745 - 4505688
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||||   | |||||||||||||||  |||||||||||||||||||| ||||    
T  4505745 atgaggcccatcattgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 4505688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 34693213 - 34693156
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    ||||||||||| | | ||||||||||| |||  |||||||||||||||||||| ||||    
T  34693213 atgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcaggg 34693156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 34715625 - 34715568
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    ||||||||||| | | ||||||||||| |||  |||||||||||||||||||| ||||    
T  34715625 atgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcaggg 34715568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 7162726 - 7162686
Alignment:
Q  148 gggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    ||||||||||||||  |||||||||||||||||||| ||||    
T  7162726 gggaggcccagctcgtttgagctgtttgcaccccctcaggg 7162686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 12337690 - 12337746
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||| | | |||||||| ||||||  |||||||||||||||||||| ||||    
T  12337690 tgaggcccatccttgagggaggctcagctcgtttgagctgtttgcaccccctcaggg 12337746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 11081683 - 11081746
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggc 194  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11081683 atgaggcccatgccttagggaggcctagctccattgagctgtttgcaccccctaagggccgggc 11081746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 17353824 - 17353755
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgatta 201  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||||||||||||||||    
T  17353824 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctgatta 17353755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 19987031 - 19986966
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    |||||||||||  | |||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  19987031 tgaggcccataattgagggaggcccagctctgttgagctgtttgcacccccttagggccgggcctg 19986966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 20711953 - 20712020
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgat 199  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||| ||| |||||||||||||||    
T  20711953 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggccgggcctgat 20712020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 20611564 - 20611514
Alignment:
Q  137 cccataccttagggaggcccagctccattgagctgtttgcaccccctaagg 187  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  20611564 cccataccttagggaggcccagctccattgagctctttgcacaccccaagg 20611514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 27788923 - 27788984
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccggg 193  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||||||||    
T  27788923 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccggg 27788984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 235475 - 235528
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgatt 200  Q
    |||||||||||||||  || ||||||||||||||||| |||| |||||||||||    
T  235475 agggaggcccagctctgttaagctgtttgcaccccctcagggacgggcctgatt 235528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 23070890 - 23070941
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 183  Q
    |||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  23070890 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 23070941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 13727649 - 13727706
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||||   | |||||||||||||||  |||||||||||||||||||| ||||    
T  13727649 atgaggcccatctttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 13727706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 19741239 - 19741280
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  19741239 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 19741280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 21280383 - 21280342
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  21280383 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 21280342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 21479350 - 21479293
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    ||||||||||| | | |||||||||||||||  || ||||||||||||||||| ||||    
T  21479350 atgaggcccatccttgagggaggcccagctcgttttagctgtttgcaccccctcaggg 21479293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 27314780 - 27314821
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  27314780 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 27314821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 30832668 - 30832717
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcacccc 181  Q
    |||||||||| | | |||||||||||||||  ||||||||||||||||||    
T  30832668 tgaggcccatccttgagggaggcccagctcatttgagctgtttgcacccc 30832717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 195
Target Start/End: Original strand, 4931793 - 4931938
Alignment:
Q  49 ccactaggccacttccgcaaatgtgaaatttaacactcgctctatatatttaatattttttaactgggctataannnnnnnnatgaggcccataccttag 148  Q
    ||||| |||||||||| ||||| ||| |||||||||||| |||||||| |||||||| || | |||| ||||||        ||||||| |||||||| |    
T  4931793 ccactgggccacttccacaaatatgatatttaacactcgatctatataattaatattgtt-agctggactataattttttttatgaggcgcataccttgg 4931891  T
Q  149 ggaggcccagctccattgagctgtttgcaccccctaagggccgggcc 195  Q
    ||||| |||||||||||||||| |||||||||||||| || ||||||    
T  4931892 ggaggtccagctccattgagctatttgcaccccctaaaggtcgggcc 4931938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 34855990 - 34855925
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  34855990 atgaggcccataccttagggaggcccagctccatttagctgtttgca-tccctaagggccgggcctg 34855925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 34221158 - 34221261
Alignment:
Q  92 atatatttaatattttttaactgggctataannnnnnnnatgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccg 191  Q
    ||||||||| ||||||||| |||||||||||        ||||| | ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||    
T  34221158 atatatttattatttttta-ctgggctataaatttttatatgagacacataccttagggaggtccagctccattgagctgttcgca-cccctaagggccg 34221255  T
Q  192 ggcctg 197  Q
    | ||||    
T  34221256 gtcctg 34221261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 16199027 - 16199092
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| ||||||| |||||    
T  16199027 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgcgcctg 16199092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 24395506 - 24395445
Alignment:
Q  136 gcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||| |||||||| |||||||||||||| ||||||| |||||||| |||| ||||    
T  24395506 gcccataccttggggaggcctagctccattgagctctttgcacgccctaaggtccggccctg 24395445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 38869594 - 38869660
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 198  Q
    ||||||||||  || ||||||||||||||   |||||||||||||||||||| | ||||||||||||    
T  38869594 tgaggcccatgactgagggaggcccagctttgttgagctgtttgcaccccctcatggccgggcctga 38869660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 27923950 - 27923885
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  || ||||||| |||||||  |||||||||||||||||||| |||| ||||||||    
T  27923950 tgaggcccatgactgagggaggtccagctctgttgagctgtttgcaccccctcagggacgggcctg 27923885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 15480230 - 15480286
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  15480230 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 15480286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 19523158 - 19523102
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  19523158 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 19523102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 34756614 - 34756666
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 183  Q
    ||||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  34756614 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 34756666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 16799557 - 16799608
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 183  Q
    ||||||||||  || ||||||||| ||||| |||||||||||||||||||||    
T  16799557 tgaggcccatgactgagggaggcctagctctattgagctgtttgcaccccct 16799608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 30853314 - 30853275
Alignment:
Q  149 ggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  30853314 ggaggcccagctcgtttgagctgtttgcaccccctaaggg 30853275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 40389781 - 40389831
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    |||||||||||| ||  ||||||||||||||||| || |||||||||||||    
T  40389781 agggaggcccaggtctgttgagctgtttgcacccgctcagggccgggcctg 40389831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 31881606 - 31881647
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  31881606 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 31881647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 36188020 - 36188076
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||| | | ||||||||||| |||  |||||||||||||||||||| ||||    
T  36188020 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcaggg 36188076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 50483361 - 50483442
Alignment:
Q  92 atatatttaatattttttaactgggctataannnnnnnnatgaggcccataccttagggaggcccagctccattgagctgttt 174  Q
    ||||||||| ||||||||| |||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  50483361 atatatttattatttttta-ctgggctataaatttttatatgaggcccataccttagggaggcccagctccattgagctgttt 50483442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 43207475 - 43207544
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgatta 201  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| ||| |||||||||||||    
T  43207475 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcaggaccgggcctgatta 43207544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 53507118 - 53507183
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  53507118 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 53507183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 44708347 - 44708281
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 198  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| || |||||||||||    
T  44708347 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagagccgggcctga 44708281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 48156992 - 48156942
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  48156992 agggaggcccagctctgttgagctgtttgcaccccctcagggccgggcctg 48156942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 34290875 - 34290940
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    |||||||||| ||| ||||||||||| |||  |||||||||||||||||||| |||| ||||||||    
T  34290875 tgaggcccatgcctgagggaggcccaactctgttgagctgtttgcaccccctcagggtcgggcctg 34290940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 6937588 - 6937655
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 198  Q
    ||||| ||||||| || || |||||||||||||||||||| ||||||||||| || || |||||||||    
T  6937588 atgagacccatacattgggaaggcccagctccattgagctatttgcaccccccaaaggtcgggcctga 6937655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 9878935 - 9878986
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 198  Q
    |||||||||||||||  |||||||||||||||||||| |||||||| |||||    
T  9878935 agggaggcccagctctgttgagctgtttgcaccccctcagggccggacctga 9878986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 201
Target Start/End: Original strand, 36716275 - 36716345
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgatta 201  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| |||| ||  ||||||||    
T  36716275 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcagggacgcccctgatta 36716345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 38681347 - 38681404
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  38681347 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 38681404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 50939469 - 50939534
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||| ||| |||| ||||||||    
T  50939469 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcacctcctcagggacgggcctg 50939534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 54619453 - 54619510
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  54619453 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 54619510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 27078818 - 27078870
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 183  Q
    ||||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  27078818 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 27078870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 27084615 - 27084667
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 183  Q
    ||||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  27084615 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 27084667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 50258735 - 50258791
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  50258735 tgaggcccatccttgagggaggcccagctcatttgagctgtttgcaccccctcaggg 50258791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 179
Target Start/End: Complemental strand, 33426399 - 33426368
Alignment:
Q  148 gggaggcccagctccattgagctgtttgcacc 179  Q
    ||||||||||||||||||||||||||||||||    
T  33426399 gggaggcccagctccattgagctgtttgcacc 33426368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 23641464 - 23641510
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcac 178  Q
    ||||||||||||||| ||||||||| | |||||||||| ||||||||    
T  23641464 tgaggcccataccttggggaggcccggttccattgagcggtttgcac 23641510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 3954868 - 3954909
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  3954868 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 3954909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 36605911 - 36605862
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcacccc 181  Q
    |||||||||| | | |||||||||||||||  ||||||||||||||||||    
T  36605911 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcacccc 36605862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 5128247 - 5128313
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    |||||||||||| ||| | ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5128247 atgaggcccatatcttggagaggcccagctccattgagctgtttacaccccccaagggccgggcctg 5128313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 9173256 - 9173322
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 198  Q
    ||||||||||  || ||||||||||| |||  |||||||||||||||||||| ||||||||||||||    
T  9173256 tgaggcccatgactgagggaggcccaactctgttgagctgtttgcaccccctcagggccgggcctga 9173322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 1367112 - 1367177
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| ||||||| |||||    
T  1367112 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggccgtgcctg 1367177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 13913717 - 13913782
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||| ||||||||    
T  13913717 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 13913782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 39135063 - 39135132
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgatta 201  Q
    ||||||||||||||| ||||||||||| ||||||||||| ||||||| ||| ||||  ||| ||||||||    
T  39135063 tgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaaggttcggccctgatta 39135132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 40502025 - 40502090
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||| ||||||||    
T  40502025 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctg 40502090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 44895517 - 44895466
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctga 198  Q
    |||||||||||||||  |||||||||||||||||||| ||||||| ||||||    
T  44895517 agggaggcccagctctgttgagctgtttgcaccccctcagggccgagcctga 44895466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 17168834 - 17168769
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  || ||||||||| ||||| ||||||||||||||| ||||| |||| ||||||||    
T  17168834 tgaggcccatgactgagggaggccaagctctattgagctgtttgcatcccctcagggtcgggcctg 17168769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 44655605 - 44655548
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  44655605 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 44655548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 6771761 - 6771705
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  6771761 tgaggcccatccttaagggaggcccagctcgtttgagctgtttgcaccccctcaggg 6771705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 14146270 - 14146214
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  14146270 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 14146214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 27906948 - 27907000
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 183  Q
    ||||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  27906948 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 27907000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 23181756 - 23181711
Alignment:
Q  152 ggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  |||||||||||||||||||| |||||||| ||||    
T  23181756 ggcccagctcggttgagctgtttgcaccccctcagggccggccctg 23181711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 41697295 - 41697336
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||||||||  |||||||||||||||||||| ||||    
T  41697295 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 41697336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 6888534 - 6888478
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||| | | ||||||||||| |||  |||||||||||||||||||| ||||    
T  6888534 tgaggcccatccttgagggaggcccaactcgtttgagctgtttgcaccccctcaggg 6888478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 10912112 - 10912160
Alignment:
Q  149 ggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    |||||||||||||  |||||||||| ||||||||| |||||||| ||||    
T  10912112 ggaggcccagctcgtttgagctgttcgcaccccctcagggccggccctg 10912160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 50146095 - 50146055
Alignment:
Q  140 ataccttagggaggcccagctccattgagctgtttgcaccc 180  Q
    ||||||||| |||||||| |||||||||||||||| |||||    
T  50146095 ataccttagtgaggcccaactccattgagctgtttacaccc 50146055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 51607673 - 51607741
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgat 199  Q
    |||||||||||   | ||| ||||||||||| ||||||||||||||||| ||| | | |||||||||||    
T  51607673 atgaggcccatgattgaggaaggcccagctctattgagctgtttgcaccacctcatgaccgggcctgat 51607741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 42600649 - 42600582
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgat 199  Q
    ||||||||||  || |||||||||||||||  |||||||||||||||||||| |||| ||||||||||    
T  42600649 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccccctcagggacgggcctgat 42600582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 18808694 - 18808755
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccggg 193  Q
    ||||||| |||||||| |||||||| ||||||| |||||||||||||||||| ||||||||||    
T  18808694 atgaggctcataccttggggaggcctagctccaatgagctgtttgcaccccc-aagggccggg 18808755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 9107849 - 9107804
Alignment:
Q  134 aggcccataccttagggaggcccagctccattgagctgtttgcacc 179  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||    
T  9107849 aggcccataccttggggaggcccaactccattgagctgtttgcacc 9107804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 2952472 - 2952529
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  2952472 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 2952529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 5860995 - 5861052
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  5860995 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 5861052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 3048773 - 3048825
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccccct 183  Q
    ||||||||||| | | |||||||||||||||  ||||||||||||||||||||    
T  3048773 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccct 3048825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 5973367 - 5973407
Alignment:
Q  137 cccataccttagggaggcccagctccattgagctgtttgca 177  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  5973367 cccataccttggggaggcccagctccattgagcggtttgca 5973407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 20003877 - 20003933
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
    |||||||||| | | |||||||||||||||  |||||||||||||||||||| ||||    
T  20003877 tgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccccctcaggg 20003933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 5721490 - 5721444
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcac 178  Q
    |||||||||| |||| ||||||||||| |||||||||| ||||||||    
T  5721490 tgaggcccatgccttggggaggcccagttccattgagcggtttgcac 5721444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 10917244 - 10917194
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    |||||||||||||||  |||||||||||||||||||| | || ||||||||    
T  10917244 agggaggcccagctctgttgagctgtttgcaccccctcaaggacgggcctg 10917194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 23606856 - 23606914
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggcc 190  Q
    ||||||||||  || ||||||||||| |||  |||||||||||||||||||| ||||||    
T  23606856 tgaggcccatgactgagggaggcccaactctgttgagctgtttgcaccccctcagggcc 23606914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 23798496 - 23798565
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgatta 201  Q
    ||||||||||  || ||||||||||||||   |||||||||| ||||||||| | |||| ||||||||||    
T  23798496 tgaggcccatgactgagggaggcccagctttgttgagctgttcgcaccccctcaaggccaggcctgatta 23798565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 30883176 - 30883127
Alignment:
Q  131 atgaggcccataccttagggaggcccagctccattgagctgtttgcaccc 180  Q
    ||||||||||| | | |||||||||||||||  |||||||||||||||||    
T  30883176 atgaggcccatccttgagggaggcccagctcgtttgagctgtttgcaccc 30883127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 106444 - 106379
Alignment:
Q  132 tgaggcccataccttagggaggcccagctccattgagctgtttgcaccccctaagggccgggcctg 197  Q
    ||||||||||  || |||||||||||||||  ||||||||||||||||| || |||||||||||||    
T  106444 tgaggcccatgactgagggaggcccagctctgttgagctgtttgcaccctctcagggccgggcctg 106379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 4197 - 4135
Alignment:
Q  149 ggaggcccagctccattgagctgtttgcaccccctaagggccgggcctgattacaatacaaca 211  Q
    |||||||||||||  ||||||||||||||||| || |||||||| |||||| |||| ||||||    
T  4197 ggaggcccagctctgttgagctgtttgcaccctctcagggccggccctgataacaacacaaca 4135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 1061 - 1020
Alignment:
Q  147 agggaggcccagctccattgagctgtttgcaccccctaaggg 188  Q
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T  1061 agggaggcccagctcgtttgagctgtttgcaccccctcaggg 1020  T

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