View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5508-Insertion-1 (Length: 864)
Name: NF5508-Insertion-1
Description: NF5508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5508-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 8 - 689
Target Start/End: Complemental strand, 780359 - 779672
Alignment:
| Q |
8 |
tcttctttatctcacagatgacaaatcctgattttgttccatttggcaccggaacattcacattgagctcttgcaaagtttgagtccaggaatatttctc |
107 |
Q |
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| T |
780359 |
tcttctttatctcacagatgacaaaccctgattttgttccatttggcaccggaacattcacattgagctcttgcaaagtttgagtccaggaatatttctc |
780260 |
T |
|
| Q |
108 |
cagatccatgccattaccatgatttggag-tgtccattataaagaacaaaggtgtnnnnnnnccttaaaatagtaaagttgataaccatttagtgttatt |
206 |
Q |
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| T |
780259 |
cagatccatgccattaccttgatttggagctgtccattataaagaacaaaggtgtaaaaaaaccttaaaatagtaaagttgataaccatttagtgttatt |
780160 |
T |
|
| Q |
207 |
tgttactattccag----taatgaatagttaagtgatataaaacacaaaattgattccatcacgcacaatcaaattgattcc-------taaacggtttc |
295 |
Q |
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| T |
780159 |
tgttactattccagtagctaatgaatagttaagtgatataaaacacaaaattgattccatcatgcacaatcaaattgattcctagtatttaaacggtttc |
780060 |
T |
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| Q |
296 |
caaccagcttcgtcactgtttgttgatggattgtctaggtcattagctttatagcacatacacttatgatagatgacgtctatgatgtctaacatgtgtc |
395 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
780059 |
caaccagcttcgtcgctgtttgttgatggattgtctaggtcattagctttatagcacatacacttatgatagatgacgtctatgatgtctaacatgtgtc |
779960 |
T |
|
| Q |
396 |
ggacaaattaaatgtgataagttcaataaactcattcgcttattaatttttacgtgtcttaagtccgtaacggtgtttcatagatcattatcctattgac |
495 |
Q |
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| T |
779959 |
ggac-----aactgtgataagttcaataaactcattcgcttattaatttttacgtgtcttaagtccgtaacagtgtttcatagatcattatcctattgac |
779865 |
T |
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| Q |
496 |
tatgactctccattacaat-nnnnnnnccatgaaattaataaacaactaacattctcagctcaagaattagtatcaaaactcatgttataatcatataaa |
594 |
Q |
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| T |
779864 |
tatgactctccattacaataaaacaaaccatgaaattaataaacaactaacattctcagctcaagaattagtatcaaaactcatgttataatcatataaa |
779765 |
T |
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| Q |
595 |
aatgtcaaacagacacaattattatcattcatnnnnnnnnnnnttcaaaaatactcaacaagacatcaataacacaaggatcatgactaatagtt |
689 |
Q |
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| T |
779764 |
aatgtcaaacagacacaattgttatcattcat--aaaaaaacattctaaaatactcaacaagacatcaataacacaaggatcatgactaatagtt |
779672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 770986 - 771133
Alignment:
| Q |
8 |
tcttctttatctcacagatgacaaatcctgattttgttccatttggcaccggaacattcacattgagctcttgcaaagtttgagtccaggaatatttctc |
107 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
770986 |
tcttcttaatctcacagatgacaaaccctgattttgttccatttggcactggaacattcacattcagctcttgcaaagtttgagtccaggaatacttctc |
771085 |
T |
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| Q |
108 |
cagatccatgccattaccatgatttggag-tgtccattataaagaaca |
154 |
Q |
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| T |
771086 |
caaatccataccattaccctgatttggtgctgtccattataaaaaaca |
771133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 751 - 843
Target Start/End: Complemental strand, 779610 - 779518
Alignment:
| Q |
751 |
gctagggcaaagaatgaaattcgttattttcttacctgctaagccactttccccatccttcttctccgtcccaaccccggacttctcatcgtt |
843 |
Q |
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| T |
779610 |
gctagggcaaagaatgaaattcgttattttcttacctgctaagccactttccccatccttcttctccgtcccaaccccggacttctcatcgtt |
779518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 785054 - 784904
Alignment:
| Q |
8 |
tcttctttatctcacagatgacaaatcctgattttgttccatttggcaccggaacattcacattgagctcttgcaaagtttgagtccaggaatatttctc |
107 |
Q |
| |
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|||||||||||||||| ||||||| | |||||||||||| |||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||| |
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| T |
785054 |
tcttctttatctcacatgtgacaaaccttgattttgttccgtttggcactggaacattcacattgagctcttgaagagtttgagtccaagaatatttctc |
784955 |
T |
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| Q |
108 |
cagatccatgccattaccatgatttggag-tgtccattataaagaacaaag |
157 |
Q |
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| T |
784954 |
cagatccataccattaccctgattgggagctgtcaattaaaaagagcaaag |
784904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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