View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5508_low_1 (Length: 486)
Name: NF5508_low_1
Description: NF5508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5508_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 16 - 479
Target Start/End: Complemental strand, 35369914 - 35369442
Alignment:
| Q |
16 |
aaaatagactaatataattttgggaagggtgcttcacctggaaaattataataaagttaacggccaagatgaaaggaaaaatgtcactactatcatcgtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||| |
|
|
| T |
35369914 |
aaaatagactaatataattttgggaagggtgcttcacctggaaaattataataaagttaagggccaaggtgaaaggaaaaatgtcactaccatcattgtt |
35369815 |
T |
|
| Q |
116 |
tttgaagaaaaaatatgagtgagaaaagaaagcagtgagtgtcagttaaagtgccgtctttcaacttcaaaactacaaaaagcaacttctcctacgttgt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
35369814 |
tttgaagaaaaaatatgagtgagaaaagaaagcagtgagtgtcagttaaagtgccgtcttccaacttcaaagctacaaaaagcaacttctcctacgttct |
35369715 |
T |
|
| Q |
216 |
ctcattaccgtttagccattttctaatctttagttttggtttgtcaaaaatgatgaaagtccacaaatcataattcaaccggt-aaaaatgtcaaaattg |
314 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||| |||||||||| |
|
|
| T |
35369714 |
ctcattaccgtttagccattttctagtctttagttttggtttgtcaaaaatgatgaaagtccacaaattatagttcaattggtaaaaaaagtcaaaattg |
35369615 |
T |
|
| Q |
315 |
ttagatcgaatgtcgtaac--aggattaaatttcaacttctttattttcatgtgtattgagtttccaatggctatttcaatttgtttgtctacccaaga- |
411 |
Q |
| |
|
|||| ||||| |||||||| ||| | ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35369614 |
ttaggtcgaacgtcgtaaccgaggttcaaattccaacttctttatttttatgtgtattgagtttccaatggctatttcaatttgtttgtctacccaagaa |
35369515 |
T |
|
| Q |
412 |
-----tgaaagattaggccaagattgcagttgtaggctgtagccattgttctacttgcttctctccgcctttg |
479 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35369514 |
aatggtgaaagattaggctaagattgcagttgtaggctgtagccattgttctacttgcttctctccgtctttg |
35369442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 1216219 - 1216183
Alignment:
| Q |
297 |
gtaaaaatgtcaaaattgttagatcgaatgtcgtaac |
333 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
1216219 |
gtaaaaatgtcaaaattgttagatcgagtgttgtaac |
1216183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 35373114 - 35373074
Alignment:
| Q |
40 |
aagggtgcttcacctggaaaattataataaagttaacggcc |
80 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| |||| |
|
|
| T |
35373114 |
aaggatgcttcacctggaaaattataataaatttaagggcc |
35373074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 327
Target Start/End: Complemental strand, 33116437 - 33116393
Alignment:
| Q |
283 |
tcataattcaaccggtaaaaatgtcaaaattgttagatcgaatgt |
327 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
33116437 |
tcataattaaaccgataaaaatatcaaaattattagatcgaatgt |
33116393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University