View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5509-Insertion-1 (Length: 143)
Name: NF5509-Insertion-1
Description: NF5509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5509-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 86; Significance: 2e-41; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 7716012 - 7716142
Alignment:
| Q |
8 |
gctatttggcaccttattcgttgttggattgggannnnnnnctgtcaacccttttggtatttcagaccattttgttatgtttggtcatttaacatacgtt |
107 |
Q |
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| T |
7716012 |
gctatttggcaccttaatcattgttggattgggatttttt-ctgtcaacccttttggtattttagaccattttgttatgtttggtcatttaacatacgtt |
7716110 |
T |
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| Q |
108 |
tctaaagttccgcgatctatctcgcacgtcat |
139 |
Q |
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| T |
7716111 |
tctaaagttcagcgatctatctcacacgtcat |
7716142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 7723784 - 7723918
Alignment:
| Q |
8 |
gctatttggcaccttattcgttgttggattgggannnnnnnctgtcaacccttttggtatttcagaccattttgttatgtttggtcatttaacatacgtt |
107 |
Q |
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| T |
7723784 |
gctatttgacaccttgttcgtcgttggattgggatttttt-cggtcaacccttttggtattttagaatattttgttctatttggtcatttagcatacgtt |
7723882 |
T |
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| Q |
108 |
tctaaagttccgcgatctatctcgcacgtcatttgg |
143 |
Q |
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| T |
7723883 |
tctaaagttcagcgatctatctcgcacgtcatttgg |
7723918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 7729934 - 7730068
Alignment:
| Q |
8 |
gctatttggcaccttattcgttgttggattgggannnnnnnctgtcaacccttttggtatttcagaccattttgttatgtttggtcatttaacatacgtt |
107 |
Q |
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||||||||||||||| ||||| |||||||||||| | |||||||||||||||||| || |||||||||| |||| |||||||| || ||||| |
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| T |
7729934 |
gctatttggcaccttgttcgtcgttggattgggatttttt-cgatcaacccttttggtattttaggccattttgttttgttatgtcatttagcacacgtt |
7730032 |
T |
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| Q |
108 |
tctaaagttccgcgatctatctcgcacgtcatttgg |
143 |
Q |
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| T |
7730033 |
tctaaagttccgcgatctatctcgcacgtcatttgg |
7730068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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