View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5510-Insertion-2 (Length: 892)
Name: NF5510-Insertion-2
Description: NF5510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5510-Insertion-2 |
 | |
|
| [»] scaffold0477 (2 HSPs) |
| | |
|
| [»] scaffold0288 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 8 - 452
Target Start/End: Complemental strand, 3088050 - 3087598
Alignment:
| Q |
8 |
tgtcaatcagttggaaagaacttcattcaaccctttggtgaacttcttcgtcgaattcatgactctgccgatgctggtcttattccaccagttacttgct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3088050 |
tgtcaatcagttggaaagaacttcattcaaccctttggtgaacttcttcgtcgaattcatgactctgccgatgctggtcttattccaccagttacttgct |
3087951 |
T |
|
| Q |
108 |
tagtagctgatttttacatgccatttaccatacaagttgctgaagagaatgcactcccaatccttctcttttcaccagccagtgcatgtaacttcttaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3087950 |
tagtagctgatttttacatgccatttaccatacaagttgctgaagagaatgcactcccaatccttctcttttcaccagccagtgcatgtaacttcttaac |
3087851 |
T |
|
| Q |
208 |
tactttccactttcgtacaatatttgacaaaggtctaacaccgctcaaaggtaataatttgcgatctctc--------tctcataaatctaacattcgta |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
3087850 |
tactttccactttcgtacaatatttgacaaaggtctaataccgctcaaaggtaataatttgcgatctctctctctttctctcataaatataacattcgtg |
3087751 |
T |
|
| Q |
300 |
gctatgtaatatgagagtatgttcgttcaaatttgtttcataaagga-aatttagtttaaagactttatagcaagttgtcgagtagatatactcaatgag |
398 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| ||||| ||||||||| ||||||||| |||||||| |||||| |
|
|
| T |
3087750 |
gctatgtaatatgagagtatgttcgtttgaatttgtttcataaagtataatttagtttgaagaccttatagcaatttgtcgagttgatatacttaatgag |
3087651 |
T |
|
| Q |
399 |
aacttttaatttgacggttggattgataaaatttaatattgataatgagtcatt |
452 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
3087650 |
aacttttaattcgacggttggattgataaaatttaatatcga-aatgagtcatt |
3087598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 499 - 892
Target Start/End: Complemental strand, 3087518 - 3087125
Alignment:
| Q |
499 |
tatgaataatattagtaacgaactctttgtcaaacacttttcaacacactctttctgatttacattcatgagtcccacataatttgacgagactcataaa |
598 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
3087518 |
tatgaataatattagtaacaaactctttgtcaaacacttttcaacgcactctttctgattaacattcatgagtcccacataatttaacgaaactcataaa |
3087419 |
T |
|
| Q |
599 |
tgttaaccaatnnnnnnngtgtgttagaaagcgttagagagtgtattcctagtaagctattgacttcttctataattatgacaagcagatgagatttta- |
697 |
Q |
| |
|
||| ||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
3087418 |
tgtaaaccagtgaaaaaagtgtgttagaaagcgtt-gagagtgtattcctagcaagctattgacttcttctataattatgacaagcatatgagagtttct |
3087320 |
T |
|
| Q |
698 |
gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat |
797 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3087319 |
gacgccagagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat |
3087220 |
T |
|
| Q |
798 |
ttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatat |
892 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3087219 |
ttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatat |
3087125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 5e-37; HSPs: 25)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 63 - 266
Target Start/End: Complemental strand, 4623557 - 4623354
Alignment:
| Q |
63 |
ttcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttaccatacaagttgctgaagagaatgcact |
162 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||| | |||| ||||||| ||||||| ||||||| |||||||||| ||||||| |
|
|
| T |
4623557 |
ttcatgactctgccactgctggtcttgttccaccagttacttgcttagtttccgattgttacatgtcatttacaatacaagctgctgaagagcatgcact |
4623458 |
T |
|
| Q |
163 |
cccaatccttctcttttcaccagccagtgcatgtaacttcttaactactttccactttcgtacaatatttgacaaaggtctaacaccgctcaaaggtaat |
262 |
Q |
| |
|
|||||| || |||| || ||||| |||||| ||| |||||| || ||| ||||||| |||| | ||||| |||||||||| ||| ||||||||||| |
|
|
| T |
4623457 |
cccaattgttttcttctccccagctagtgcaagtaccttcttgtctgttttacactttcatacactgtttgagaaaggtctaataccactcaaaggtaac |
4623358 |
T |
|
| Q |
263 |
aatt |
266 |
Q |
| |
|
|||| |
|
|
| T |
4623357 |
aatt |
4623354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 21 - 267
Target Start/End: Original strand, 4259012 - 4259258
Alignment:
| Q |
21 |
gaaagaacttcattcaaccctttggtgaacttcttcgtcgaattcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgattt |
120 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| | | |||| ||||| ||| | ||||| || ||||||| |||||||||||||| |||||| |
|
|
| T |
4259012 |
gaaagaacttccttcagccctttggtgaacttcttgctaaacttcaagactcagccactactggtattgttccacctgttacttgcttagtttctgattg |
4259111 |
T |
|
| Q |
121 |
ttacatgccatttaccatacaagttgctgaagagaatgcactcccaatccttctcttttcaccagccagtgcatgtaacttcttaactactttccacttt |
220 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||| ||||||||||||| || |||| || ||||| |||||| ||| |||||| || ||| |||||| |
|
|
| T |
4259112 |
ttacatgtcatttagtatacaagctgctgaagagcatgcactcccaattgttttcttctctccagctagtgcaagtaccttcttgtctgttttacacttt |
4259211 |
T |
|
| Q |
221 |
cgtacaatatttgacaaaggtctaacaccgctcaaaggtaataattt |
267 |
Q |
| |
|
|||||| | ||||| |||||||||| ||| ||||||||||| ||||| |
|
|
| T |
4259212 |
cgtacactgtttgaaaaaggtctaataccactcaaaggtaacaattt |
4259258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 694 - 885
Target Start/End: Original strand, 4299050 - 4299241
Alignment:
| Q |
694 |
tttagacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccatttta |
793 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||| |||| ||||| ||||| | |||||| | | ||| ||| ||| ||| || |
|
|
| T |
4299050 |
tttagacatcaaactagactgtattccaggattgcagaactttcgattgaaagatctaactgactttataaggagtacaaatccaaatgatgtcatggta |
4299149 |
T |
|
| Q |
794 |
gaatttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgc |
885 |
Q |
| |
|
||||||| |||||||| || ||||| || |||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4299150 |
gaatttgccattgaagcggcagatagatttcacaaagcatctgctattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgc |
4299241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 21 - 267
Target Start/End: Complemental strand, 4627442 - 4627196
Alignment:
| Q |
21 |
gaaagaacttcattcaaccctttggtgaacttcttcgtcgaattcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgattt |
120 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| | | |||||||||| ||| |||||||||| || ||||||||||||||||||| | |||| |
|
|
| T |
4627442 |
gaaagaacttccttcagccctttggtgaacttcttgctaaacttcatgactcagccactgctggtcttgttgcaccagttacttgcttagtttcagattg |
4627343 |
T |
|
| Q |
121 |
ttacatgccatttaccatacaagttgctgaagagaatgcactcccaatccttctcttttcaccagccagtgcatgtaacttcttaactactttccacttt |
220 |
Q |
| |
|
|| ||| ||||||||||||||| ||||||||| ||||||||||||| ||||||||| | | ||||||||| ||||| ||| ||| |||||| |
|
|
| T |
4627342 |
tttaatgtcatttaccatacaagctgctgaagaacatgcactcccaattgctctcttttctacttctagtgcatgttctttcttgtctattttgcacttt |
4627243 |
T |
|
| Q |
221 |
cgtacaatatttgacaaaggtctaacaccgctcaaaggtaataattt |
267 |
Q |
| |
|
|||||| | ||||| |||||||||| ||| ||||||||||| ||||| |
|
|
| T |
4627242 |
cgtacactgtttgaaaaaggtctaataccactcaaaggtaacaattt |
4627196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 4298334 - 4298509
Alignment:
| Q |
21 |
gaaagaacttcattcaaccctttggtgaacttcttcgtcgaattcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgattt |
120 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| | | ||| ||| |||||| |||||||||| | |||||||||||||||||||| |||||||| |
|
|
| T |
4298334 |
gaaagaacttccttcagccctttggtgaacttcttgctaaacttcgtgattctgccactgctggtcttgtaccaccagttacttgcttagttgctgattt |
4298433 |
T |
|
| Q |
121 |
ttacatgccatttaccatacaagttgctgaagagaatgcactcccaatccttctcttttcaccagccagtgcatgt |
196 |
Q |
| |
|
|| ||| ||||||||||||||| ||| ||||| ||||||||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
4298434 |
tttaatgtcatttaccatacaagctgcggaagaacatgcactcccaattattctcttttgtccagctagtgcatgt |
4298509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 90 - 268
Target Start/End: Original strand, 4255544 - 4255722
Alignment:
| Q |
90 |
ttccaccagttacttgcttagtagctgatttttacatgccatttaccatacaagttgctgaagagaatgcactcccaatccttctcttttcaccagccag |
189 |
Q |
| |
|
|||||| ||||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||| ||||||||||||| ||||| |||| |||| | |
|
|
| T |
4255544 |
ttccactagttacttgcttagtttctgattgttacatgtcatttaccatacaagctgctgaagagcatgcactcccaattgttctcctttccccagatat |
4255643 |
T |
|
| Q |
190 |
tgcatgtaacttcttaactactttccactttcgtacaatatttgacaaaggtctaacaccgctcaaaggtaataatttg |
268 |
Q |
| |
|
|||||||| ||||| || |||| ||||| |||||| | ||| | |||||||||| ||| |||| ||||| |||||| |
|
|
| T |
4255644 |
tgcatgtatgttcttctctgctttacacttccgtacactgtttaagaaaggtctaataccattcaatggtaaaaatttg |
4255722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 27 - 180
Target Start/End: Complemental strand, 4471203 - 4471050
Alignment:
| Q |
27 |
acttcattcaaccctttggtgaacttcttcgtcgaattcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacat |
126 |
Q |
| |
|
||||| ||||||||||||||||||||||| | || || ||| ||||||| |||||||||||| || |||||||||||| || | |||||| |||||| |
|
|
| T |
4471203 |
acttccttcaaccctttggtgaacttcttactagacttgatgcctctgccactgctggtcttatccctccagttacttgcataatttctgattgttacat |
4471104 |
T |
|
| Q |
127 |
gccatttaccatacaagttgctgaagagaatgcactcccaatccttctcttttc |
180 |
Q |
| |
|
||||||||| || | | ||||||||| ||||||||||||| |||||||||| |
|
|
| T |
4471103 |
gccatttacagtagatgctgctgaagaacgtgcactcccaatcgttctcttttc |
4471050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 180
Target Start/End: Original strand, 4265897 - 4266052
Alignment:
| Q |
25 |
gaacttcattcaaccctttggtgaacttcttcgtcgaattcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttac |
124 |
Q |
| |
|
||||||| |||||||||||| |||||||||| | || ||||| | |||||| ||| |||| ||||||||||| |||||||||| || | |||| |||| |
|
|
| T |
4265897 |
gaacttccttcaaccctttgatgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttac |
4265996 |
T |
|
| Q |
125 |
atgccatttaccatacaagttgctgaagagaatgcactcccaatccttctcttttc |
180 |
Q |
| |
|
||||| ||||| ||| | | ||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
4265997 |
atgccttttacaatagatgctgcggaagaacatgcactcccaatccttttcttttc |
4266052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 698 - 888
Target Start/End: Complemental strand, 4623039 - 4622849
Alignment:
| Q |
698 |
gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat |
797 |
Q |
| |
|
|||||| ||||||||||| |||| |||||| |||||||||| | |||||| |||||||| | |||||| || ||| | ||| ||| ||| |||||| |
|
|
| T |
4623039 |
gacaccgaagtagactgtgttcctggattgaagaactttcggttaaaggatttgcctgactttataaggattacagagccaaatgatgtcatggtagaat |
4622940 |
T |
|
| Q |
798 |
ttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgct |
888 |
Q |
| |
|
|| ||||||||| || || | || |||||| ||||||||||||| ||||| |||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
4622939 |
ttctcattgaagcggcagaacgatttcacaaatcctctgctattatttttaatacttataatgaacttgagactgatgcgatgaatgcgct |
4622849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 698 - 766
Target Start/End: Complemental strand, 4558024 - 4557956
Alignment:
| Q |
698 |
gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagg |
766 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
4558024 |
gacactaaagtggattgtattccaggattgcagaactttcgactgaaggatctgcctgactttataagg |
4557956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 694 - 888
Target Start/End: Complemental strand, 4626854 - 4626660
Alignment:
| Q |
694 |
tttagacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccatttta |
793 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| || | | || | |||||| | ||| || ||| ||| || |
|
|
| T |
4626854 |
tttagacaccaaactagattgtattcccggattgcagaactttcggctgaaggaccttcttaactttataaggacaacaaatcctaatgatgtcatggta |
4626755 |
T |
|
| Q |
794 |
gaatttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgct |
888 |
Q |
| |
|
|||||| ||||||||| || ||||| || |||| ||| || |||||| | || |||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
4626754 |
gaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgct |
4626660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 698 - 884
Target Start/End: Complemental strand, 4586535 - 4586349
Alignment:
| Q |
698 |
gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat |
797 |
Q |
| |
|
||||| ||||| |||||||||||||||||| ||||||||||||| |||||| |||||||| | |||||| || |||| ||| ||| | || |||||| |
|
|
| T |
4586535 |
gacactaaagtggactgtattccaggattggagaactttcgactaaaggatttgcctgactttataaggattactgatccaaatgattcgatcatagaat |
4586436 |
T |
|
| Q |
798 |
ttgtcattgaagtgg--gggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatg |
884 |
Q |
| |
|
|| ||||||||| | || | ||| ||||||| ||||||| |||| ||||| |||| |||||||||||||| |||||||| |||| |
|
|
| T |
4586435 |
ttatcattgaaggcgcaggaacggct--cacaaagactctgcttttatttttaatacttctgatgaacttgagaaggatgtaataaatg |
4586349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 374 - 455
Target Start/End: Complemental strand, 4623217 - 4623136
Alignment:
| Q |
374 |
ttgtcgagtagatatactcaatgagaacttttaatttgacggttggattgataaaatttaatattgataatgagtcattaag |
455 |
Q |
| |
|
|||| |||| |||||||||||| |||| ||||||||||||||||||||||||||||| | || || | ||||||| |||||| |
|
|
| T |
4623217 |
ttgttgagttgatatactcaataagaatttttaatttgacggttggattgataaaatctgatgtttacaatgagttattaag |
4623136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 845 - 884
Target Start/End: Original strand, 4259534 - 4259573
Alignment:
| Q |
845 |
tttaacacttatgatgaacttgagagtgatgtaatgaatg |
884 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4259534 |
tttaacacttatgatgaacttgagagtgatgtaatgaatg |
4259573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 4482115 - 4481977
Alignment:
| Q |
63 |
ttcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttaccatacaagttgctgaagagaatgcact |
162 |
Q |
| |
|
||||||| |||||| ||||||| |||| || ||||| ||||||||||| |||||| |||||||||||||| || | | ||| ||||| ||||||| |
|
|
| T |
4482115 |
ttcatgaatctgccactgctggtattatccccccagtcacttgcttagtttctgattgctacatgccatttacagtagatgctgccgaagaacatgcact |
4482016 |
T |
|
| Q |
163 |
cccaatccttctcttttcaccagccagtgcatgtaactt |
201 |
Q |
| |
|
|||||| |||||||||| || | |||||||||| |||| |
|
|
| T |
4482015 |
cccaattgttctcttttccccggtcagtgcatgttactt |
4481977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 704 - 750
Target Start/End: Original strand, 4612957 - 4613003
Alignment:
| Q |
704 |
aaagtagactgtattccaggattgcagaactttcgactgaaggatct |
750 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4612957 |
aaagtggactgtattcaaggattgcagaactttcgactgaaggatct |
4613003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 829 - 885
Target Start/End: Original strand, 4255985 - 4256041
Alignment:
| Q |
829 |
agcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgc |
885 |
Q |
| |
|
||||||||||||| | |||||||||||| ||||||||||||| |||||| ||||||| |
|
|
| T |
4255985 |
agcctctgctattgtttttaacacttataatgaacttgagagcgatgtattgaatgc |
4256041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 4462498 - 4462327
Alignment:
| Q |
25 |
gaacttcattcaaccctttggtgaacttcttcgtcgaattcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttac |
124 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || || ||| ||||||| ||| | |||||| || || ||||||||| |||| |||||| |||| |
|
|
| T |
4462498 |
gaacttcattcaaccctttagtgaacttcttacaagacttgatgcctctgccactgccgatcttatccctccggttacttgcatagtttctgattgttac |
4462399 |
T |
|
| Q |
125 |
atgccatttaccatacaagttgctgaagagaatgcactcccaatccttctcttttcaccagccagtgcatgt |
196 |
Q |
| |
|
||||||||||| | | | |||||| | ||||||||||||| |||||||||| || | |||||||||| |
|
|
| T |
4462398 |
atgccatttacagtggatgccgctgaacaacgtgcactcccaatcgttctcttttccccggtcagtgcatgt |
4462327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 4575705 - 4575600
Alignment:
| Q |
63 |
ttcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttaccatacaagttgctgaagagaatgcact |
162 |
Q |
| |
|
|||| ||||||||| |||||||||||| || ||||| ||||||||||| |||||| |||||||||||||| || | | ||||||||| |||| || |
|
|
| T |
4575705 |
ttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttctgattgctacatgccatttacagtagatgctgctgaagaacatgccct |
4575606 |
T |
|
| Q |
163 |
cccaat |
168 |
Q |
| |
|
|||||| |
|
|
| T |
4575605 |
cccaat |
4575600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 4561912 - 4561840
Alignment:
| Q |
63 |
ttcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttac |
135 |
Q |
| |
|
|||| ||||||||| |||||||||||| || ||||| ||||||||||| |||||| |||||||||||||| |
|
|
| T |
4561912 |
ttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttctgattgctacatgccatttac |
4561840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 824 - 883
Target Start/End: Complemental strand, 3172514 - 3172455
Alignment:
| Q |
824 |
cacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaat |
883 |
Q |
| |
|
|||||||| ||||||||| | || ||||||| | ||||||||||||||||||| |||||| |
|
|
| T |
3172514 |
cacaaagcttctgctattgttttcaacacttctaatgaacttgagagtgatgttatgaat |
3172455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 4503174 - 4503241
Alignment:
| Q |
66 |
atgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccattt |
133 |
Q |
| |
|
||||||||||| |||||||||||| || ||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
4503174 |
atgactctgccactgctggtcttatccctccagttacttgcttagtttctgattgcaacatgccattt |
4503241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 4489078 - 4489192
Alignment:
| Q |
66 |
atgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttaccatacaagttgctgaagagaatgcactccc |
165 |
Q |
| |
|
|||||||||| |||||||||||| || ||||||||||||||||| |||||| | ||| ||||||| || | | ||||||||| |||||||||| |
|
|
| T |
4489078 |
atgactctgctactgctggtcttatccctccagttacttgcttagtttctgattgcaatatggcatttacagtagatgctgctgaagaacatgcactccc |
4489177 |
T |
|
| Q |
166 |
aatccttctcttttc |
180 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
4489178 |
aattgttctcttttc |
4489192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 858 - 892
Target Start/End: Complemental strand, 4602531 - 4602497
Alignment:
| Q |
858 |
atgaacttgagagtgatgtaatgaatgcgctatat |
892 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
4602531 |
atgaacttgagagtgatgtaatgaatgcactatat |
4602497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 698 - 755
Target Start/End: Complemental strand, 4571871 - 4571814
Alignment:
| Q |
698 |
gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctg |
755 |
Q |
| |
|
||||| ||||| |||||||| |||||| || ||||||||||||||| |||| |||||| |
|
|
| T |
4571871 |
gacactaaagtggactgtatgccaggactgaagaactttcgactgagggatttgcctg |
4571814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 77; Significance: 3e-35; HSPs: 2)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 63 - 267
Target Start/End: Original strand, 3400 - 3604
Alignment:
| Q |
63 |
ttcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttaccatacaagttgctgaagagaatgcact |
162 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| |||||||||| |||| ||||||| ||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
3400 |
ttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccatacaagctgctgaagaacatgcact |
3499 |
T |
|
| Q |
163 |
cccaatccttctcttttcaccagccagtgcatgtaacttcttaactactttccactttcgtacaatatttgacaaaggtctaacaccgctcaaaggtaat |
262 |
Q |
| |
|
|||||| |||||||||| | | |||||||||| ||||| || |||| |||||| ||||| | ||| | ||||| |||| ||| ||||||||||| |
|
|
| T |
3500 |
cccaattgttctcttttccaccggcagtgcatgttctttcttgtctgctttacacttttgtacactgtttcaaaaaggactaataccactcaaaggtaaa |
3599 |
T |
|
| Q |
263 |
aattt |
267 |
Q |
| |
|
||||| |
|
|
| T |
3600 |
aattt |
3604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 706 - 747
Target Start/End: Original strand, 3930 - 3971
Alignment:
| Q |
706 |
agtagactgtattccaggattgcagaactttcgactgaagga |
747 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
3930 |
agtagacggtattccaggattgcagaactttcggctgaagga |
3971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 71 - 267
Target Start/End: Original strand, 2340 - 2536
Alignment:
| Q |
71 |
tctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttaccatacaagttgctgaagagaatgcactcccaatcc |
170 |
Q |
| |
|
|||||| || |||||||||| || ||||| ||| ||||||| |||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
2340 |
tctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcatttaccatacaagctgctgaagaatatgcactcccaatcc |
2439 |
T |
|
| Q |
171 |
ttctcttttcaccagccagtgcatgtaacttcttaactactttccactttcgtacaatatttgacaaaggtctaacaccgctcaaaggtaataattt |
267 |
Q |
| |
|
|||| | ||| |||| |||||||| |||||| || || |||||||| ||| | ||||||||||||||| ||| ||||||||||| ||||| |
|
|
| T |
2440 |
ttctttattcgccaggtagtgcatgctccttcttgtctgtttcgcactttcgcacactgattgacaaaggtctaataccactcaaaggtaacaattt |
2536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 824 - 888
Target Start/End: Original strand, 3077 - 3141
Alignment:
| Q |
824 |
cacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgct |
888 |
Q |
| |
|
|||| ||| ||||| ||| | |||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
3077 |
cacagagcttctgcaattgtttttaacacttataatgaacttgagagtgatgtactgaatgcgct |
3141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 698 - 766
Target Start/End: Original strand, 16685519 - 16685587
Alignment:
| Q |
698 |
gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagg |
766 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |||||| |
|
|
| T |
16685519 |
gacactaaagtggactgtattccaggattgcagaatattcgactgaaggatctgcctgactttataagg |
16685587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 20862682 - 20862787
Alignment:
| Q |
63 |
ttcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttaccatacaagttgctgaagagaatgcact |
162 |
Q |
| |
|
||||||||||| || | |||||||||| || || |||||||||||||| ||||| || |||| || |||||||||||||||||||||| |||||| |
|
|
| T |
20862682 |
ttcatgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgatagtttcatgtcagttaccatacaagttgctgaagaacttgcact |
20862781 |
T |
|
| Q |
163 |
cccaat |
168 |
Q |
| |
|
|||||| |
|
|
| T |
20862782 |
cccaat |
20862787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 24104383 - 24104273
Alignment:
| Q |
25 |
gaacttcattcaaccctttggtgaacttcttcgtcgaattcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttac |
124 |
Q |
| |
|
||||||| |||| ||||||| |||||||||| | || ||||| | |||||| ||| |||| ||||||||||| ||||||||||||| | |||| |||| |
|
|
| T |
24104383 |
gaacttccttcagccctttgatgaacttcttactagacttcatcaatctgccaatgatggtgttattccaccaattacttgcttagtttcggattgttac |
24104284 |
T |
|
| Q |
125 |
atgccatttac |
135 |
Q |
| |
|
||||||||||| |
|
|
| T |
24104283 |
atgccatttac |
24104273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 836 - 888
Target Start/End: Complemental strand, 24107136 - 24107084
Alignment:
| Q |
836 |
gctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgct |
888 |
Q |
| |
|
|||||| | |||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24107136 |
gctattgtttttaacgcttatgatgaacttgagagtgatgtaatgaatacgct |
24107084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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