View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5510-Insertion-3 (Length: 611)
Name: NF5510-Insertion-3
Description: NF5510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5510-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 3596058 - 3596439
Alignment:
| Q |
7 |
ataatatacacctttctgatatgatctccaaaaaagtaatcaaataaccacgtaatttgaatatgacataaactaccttgagcacacaaactattaatat |
106 |
Q |
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| T |
3596058 |
ataatatacacctttctgatatgatcttcaaaaaagtaatcaaataatcacgtaatttgaatatgacataaagtaccttgaggacacaaactattaatat |
3596157 |
T |
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| Q |
107 |
gaacccaacattagtattagttgcaggggttataaagtactcccaaaatatttaagttatgagcatacctttgaaagagatagtgacaatgattattacg |
206 |
Q |
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| T |
3596158 |
gaacccaacattagtattagttgcaggggttataaagtactcccaaaatatttaagttatgagcatacctttggaagagatagtgacaatgatcattatg |
3596257 |
T |
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| Q |
207 |
gaca-ttttttacttattcaagagtactgccataacattattagctaccattttgtacaatttgaaaggctcaaaacatgagctatcaatgaaagtgctg |
305 |
Q |
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| T |
3596258 |
gacatttttttacttattcaagagtacttccataacattattagcaaccattttgtacaatttgaaaggctcaaaacatgagctatcaatgaaagtgctg |
3596357 |
T |
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| Q |
306 |
ctattttggaatttataaaaaaggctaggcaacctccctcttggccaataatgaatttatcat-aaaaaactcagattatta |
386 |
Q |
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| T |
3596358 |
ctattttggaatttataaaaaaggctaggcaacctccctcttggccaataatgaatttatcataaaaaaactcagattatta |
3596439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 525 - 611
Target Start/End: Original strand, 3596664 - 3596750
Alignment:
| Q |
525 |
aatacatgtaagtaatacttactatagaaattgtacctttaatcaaatattaaccatgcagactatctaaactgatgagaaagatta |
611 |
Q |
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| T |
3596664 |
aatacatataagtaatacttactatagaaattgtacctttaatcaaatattaaccatgcagactatctaaactgatgagaaagatta |
3596750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 404 - 507
Target Start/End: Original strand, 3596428 - 3596530
Alignment:
| Q |
404 |
ctcagataattaacaaaaaagtgtacatgcaaaaaatagcaatacaatagtgtgcactttggaaacatcaagttcaagctcataagtttgcatcttcaac |
503 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3596428 |
ctcagattattaacaaaaaagtgtacatgcaaaa-atagcaatacaatagcgtgcactttggaaacatcaagttcaagctcataagttcacatcttcaac |
3596526 |
T |
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| Q |
504 |
acgg |
507 |
Q |
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|||| |
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| T |
3596527 |
acgg |
3596530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 539 - 608
Target Start/End: Original strand, 8772451 - 8772523
Alignment:
| Q |
539 |
atacttactatagaaattgtacctttaatcaaa---tattaaccatgcagactatctaaactgatgagaaaga |
608 |
Q |
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| T |
8772451 |
atactaactattgagattgtacctttaatcaaatattattaaccatccagactgcctaaactgatgagaaaga |
8772523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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