View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5510_high_1 (Length: 497)
Name: NF5510_high_1
Description: NF5510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5510_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 44 - 295
Target Start/End: Original strand, 18524722 - 18524972
Alignment:
| Q |
44 |
aaaaagcaaacgaagttgcagcaagatgcaacccctggatatattaataacagatgaaagaacaaaacgggggaatgaggggggacataaacctaaccct |
143 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||||||||||||||| |
|
|
| T |
18524722 |
aaaaagcaaaggaagttgcaggaagatgcaacccctggatatattaataacagatgaaagaacaaaaaaggg-aataaagggggacataaacctaaccct |
18524820 |
T |
|
| Q |
144 |
caaaagagttaacaaagtctaaaa-ttaggaataccaagtccattcctatcaaaatggtcatatatttctacaggcagattttgaaacctaagtgtaaga |
242 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
18524821 |
caaaagagttaacaaagtctaaaaattaggaataccaagtccattcctatcaaaatggtcatatatttgtacaggcagattttgaaacc-aagtgtaaga |
18524919 |
T |
|
| Q |
243 |
aggtatgaagagaccaaagttagccagttgatatgcaaaatggtttccttctc |
295 |
Q |
| |
|
||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
18524920 |
aggtatggagagaccaaagttagcaagttgatctgcaaaatggtttccttctc |
18524972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 293 - 484
Target Start/End: Original strand, 18525281 - 18525473
Alignment:
| Q |
293 |
ctccatcagtgttgtatt-attacaatcaagaattggaggggaccaacgaacctctttactgatagtttgatttgagggattaattctaacatcaaatga |
391 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
18525281 |
ctccatcagtgttgtatttaatacaatcaagaattggaggggaccaacgaacctctttactgatagttggctttgagagattaattctaacatcaaatga |
18525380 |
T |
|
| Q |
392 |
tttaaggatggagaagtcggtgattgatgagttagcagaaagatttgaagcattgtcagaaattgaggcagctgacagaactaagttaaaggt |
484 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18525381 |
tttaaggatggagaagtcagtgattgatgagttagtagaaagatttgaagcattgtcagaaattgaggcacctgacagaactaagttaaaggt |
18525473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 6162237 - 6162314
Alignment:
| Q |
123 |
gggggacataaa-cctaaccctcaaaagagttaacaaagtctaaaattaggaataccaagtccattcctatcaaaatg |
199 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||| ||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
6162237 |
gggggacataaaacctaaccctcaggagagttaatgaagcctaaaattaggaatatcaagactattcctatcaaaatg |
6162314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 369 - 430
Target Start/End: Complemental strand, 38360273 - 38360212
Alignment:
| Q |
369 |
ggattaattctaacatcaaatgatttaaggatggagaagtcggtgattgatgagttagcaga |
430 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| || ||||| ||||||||||| |||||||| |
|
|
| T |
38360273 |
ggattaattctaacttcaaagaatttaaggatagaaaagtctgtgattgatgaattagcaga |
38360212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University