View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5510_low_2 (Length: 455)
Name: NF5510_low_2
Description: NF5510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5510_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 446
Target Start/End: Original strand, 19751192 - 19751627
Alignment:
| Q |
10 |
catcatcatcaagatgaaaaccaaataaaatgtagtaacttagggaagaagaagaaatctgagataatgaaaactgtttatcgaattgtgtcgagtttgt |
109 |
Q |
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| T |
19751192 |
catcatcatcaagatgaaaaccaaataaaatgtagtaacttagggaagaagaagaaatctgagaaaatgaaaactgtttatcgaattgtgtcgagtttgt |
19751291 |
T |
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| Q |
110 |
tacatttcatctatatttagaagtcattgttctaactagctattagatcttcctaccaattaacagctggcactaactactatatggttagattactcac |
209 |
Q |
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| T |
19751292 |
tacatttcatctatatatagaagtcattgttctaactagctattagatcttcctaccaattaacagctggcactaactactatatggttagattactcac |
19751391 |
T |
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| Q |
210 |
tttatgtacgatacactatagtaatagtgtagcttaatgctcaagttaactaataccgagttacagttttgcaggtttaacaccaatcaccacaaaattc |
309 |
Q |
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| T |
19751392 |
tctatgtaccatacactatagtaatagtgtagc-taaagctcaagttaactaataccgagttacagttttgcaggtttaacaacaatcaccacaaaattc |
19751490 |
T |
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| Q |
310 |
aaagtaattcctcaacctcccacaaaacagaacctgaaaccatatccctcgttgacaaacatggtgagaattcactgctatacatgaaaaaatatcccaa |
409 |
Q |
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| T |
19751491 |
aaagtaattcctcaacctcctacaaaacagaacctgaaaccatatccctcgttgacaaacatggtgagaattcactgctatgcatgaaaaaatatcccaa |
19751590 |
T |
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| Q |
410 |
ccaacattaaataatttggttaatgtccgagaataat |
446 |
Q |
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| T |
19751591 |
ccaacactaaataatttggttaatgtccgagaataat |
19751627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 172
Target Start/End: Original strand, 1820236 - 1820390
Alignment:
| Q |
12 |
tcatcatcaagatgaaaaccaaataaaatgtagtaacttagggaagaagaagaaatctgagataatgaaaactgtttatcgaattgtgtcgagtttgtta |
111 |
Q |
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| T |
1820236 |
tcatcatcataatgaaaaccaaagaaaatgcagaagcttat---agaagaagaaatctcagaaaattaaaa-tgtttatcgaattgtgttgagtttgtta |
1820331 |
T |
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| Q |
112 |
catttcatctatatttagaagtcattgttctaactagctattagatcttcctaccaattaa |
172 |
Q |
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| T |
1820332 |
cggttgatctatatatagaacctatagttctaactaac--ttagatcttccaaccaattaa |
1820390 |
T |
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