View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5510_low_3 (Length: 287)
Name: NF5510_low_3
Description: NF5510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5510_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 19751728 - 19751990
Alignment:
| Q |
1 |
tactcccaaaacctgctcgaaccaaaatagaaattgtcttagaacaagtacaaatatagatttacatcaagcgattacatcccttaaatagagaacaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19751728 |
tactcccaaaacctgctcgaaccaaaatagaaattgtcttagaacaagtacaaatatagatttacatcaagcgattacatcccttaaatagagaacaaat |
19751827 |
T |
|
| Q |
101 |
gtgttacaaaaagctactaaaaaattaacagtaatgttatacatagcgagaaacattatcccaaacggatcacgaaccgaaaatagaccaacgaaaaatc |
200 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19751828 |
gtgtaacaa---gctactaaaaaattaacagtaatgttatacatagcgagaaacattatcccaaacggatcacaaaccgaaaatagaccaacgaaaaatc |
19751924 |
T |
|
| Q |
201 |
agtgatgggcgacaataacggaaggtttggaacataaattgaagtcaacaaataaagggtgagtgg |
266 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19751925 |
agtgatgggtgacaataaaggaaggtttggaacataaattgaagtcaacaaataaagggtgagtgg |
19751990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University