View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5511-Insertion-2 (Length: 985)
Name: NF5511-Insertion-2
Description: NF5511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5511-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 7 - 544
Target Start/End: Complemental strand, 28692540 - 28692002
Alignment:
| Q |
7 |
agagagaagaagtaatgaaggagggtaagaaaggtgctgaaaattctgagcttgaatctcccaagagtgttgtcatcaagcgttgccctagtagaagaaa |
106 |
Q |
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| T |
28692540 |
agagagaagaagtaatgaaggagggtaagaaaggtgctgaaaattctgagcttgaatctcccaagagtgttgtcatcaagcattgccctagtagaagaaa |
28692441 |
T |
|
| Q |
107 |
gaataagagaaaagatagggttgatttggttcttgagaaagcacaaaattgtctcnnnnnnnttcgacatttcaaaacatctttattttctccttcttga |
206 |
Q |
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| T |
28692440 |
gaataagagaaaagatagggttgatttggttcttgagaaagcacaaaattgtctcaaaaaaattcgacatttcaaaacatctttattttctccttcttga |
28692341 |
T |
|
| Q |
207 |
ttgatttaattttaacattttagtgttgttgttacatttaatttaatggat-tttaatagtaaagtc-tttag-nnnnnnnnncttattttgtcatgtgg |
303 |
Q |
| |
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| T |
28692340 |
ttgatttaattttaacattttagtgttgttg-tacatttaatttaatggatatttaatagtagagtcttttagtagtttttttcttattttgtcatgtgg |
28692242 |
T |
|
| Q |
304 |
atgctgaaaaggttatcaatggttcacctcatatctatgttccagaattgacctactttatgaaaaagacaaaaacaaagggagcgnnnnnnnnctttta |
403 |
Q |
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| T |
28692241 |
atgctgaaaaggttatcaatggttcacctcatatctatgttccagaattcacctactttatgaaaaagacaaaaacaaagggagcgttttttttctttta |
28692142 |
T |
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| Q |
404 |
aatgaaaagttatcttttgggttagacaagtataatggaagaaccacaagggtcagttttagactttattattaaactatgcgtcatgataacgattgtt |
503 |
Q |
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| T |
28692141 |
aatgaaaagttatcttttgggttagacaagtataatggaagaacca-aagggtcagttttagactttattattaaactatgcgtcatgttatcgattgtt |
28692043 |
T |
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| Q |
504 |
tctgtggcactctttaagcatattaaattaagtaattattc |
544 |
Q |
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|||| |||||||||| ||||||||||||||||||||||| |
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| T |
28692042 |
cttgtgacactctttaaacatattaaattaagtaattattc |
28692002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 609 - 985
Target Start/End: Complemental strand, 28691936 - 28691551
Alignment:
| Q |
609 |
atcatttaaaatccttaaccaatgttccaagaggactagttaacatttccatgttatgttcctttattttagttggatcaagtatacatgcattattttc |
708 |
Q |
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| T |
28691936 |
atcatttaaaatctttaaccaatgatccaagatccctagataatatttccatgttatgttcctttattttagttggatcaagtatacatgcattattttc |
28691837 |
T |
|
| Q |
709 |
atgattgcattactttctacatttttt-atatccactgagattgattctttgcataacctggacatgtgtgcatttagatagaaaatgttttatcatagt |
807 |
Q |
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| T |
28691836 |
atgattgcattactttctacatttttttatatccactgagattgattctttgcataacctggacatgggtgcatttagatagaaaatgttttataatagt |
28691737 |
T |
|
| Q |
808 |
gcctcaaatagaattggcttcaatgaatagaatatatggagaga-aaaaacacgacttttgcatttggtc-aaattgattttgatgtaagtaataatttt |
905 |
Q |
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| T |
28691736 |
acctcaaatagaattggcttcaatgaaaagaatatatggagagagaaaaacacgacttttgcatttggtcaaaattgattttgatgtaagtaataatttt |
28691637 |
T |
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| Q |
906 |
taactgttattaatta-ttgtc----nnnnnnnnnctttgttattgaatagactttacctctagtgagag-tagatataccaatct |
985 |
Q |
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| T |
28691636 |
taactgttattaattatttgtcaaaaaaaaaaaaactttgttattgaatagactttacctctagtgagagttagatataccaatct |
28691551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 730 - 801
Target Start/End: Complemental strand, 28684940 - 28684868
Alignment:
| Q |
730 |
ttttttatatccactgagattgattctttgcataacctggacatgtgtgca-tttagatagaaaatgttttat |
801 |
Q |
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| T |
28684940 |
ttttttatatccaatgagattgattctctgcataacctggacatgggtgcattttagatagaaaatgttttat |
28684868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 511 - 544
Target Start/End: Complemental strand, 39316404 - 39316371
Alignment:
| Q |
511 |
cactctttaagcatattaaattaagtaattattc |
544 |
Q |
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| T |
39316404 |
cactctttaagcatattaaattaagtaattattc |
39316371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 509 - 544
Target Start/End: Complemental strand, 12848585 - 12848550
Alignment:
| Q |
509 |
ggcactctttaagcatattaaattaagtaattattc |
544 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
12848585 |
ggcactctttaagcatattaaattaagtaactattc |
12848550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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