View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5511-Insertion-4 (Length: 560)
Name: NF5511-Insertion-4
Description: NF5511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5511-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 560
Target Start/End: Complemental strand, 51964879 - 51964327
Alignment:
| Q |
8 |
gtttgtttagtagatatttttgttgtctacctcaaagtctctatttacaagcacctttagatagatatgaatggggtttaaagtcgaggttgtaggctgt |
107 |
Q |
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| T |
51964879 |
gtttgtttagtagatatttttgttgtctacctcaaagtctctatttacaagcatctttagatagatatgaatggggtttaaagtcgaggttgtaggctgt |
51964780 |
T |
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| Q |
108 |
tgataaatacaaaggccaactgattgtaagattgaaagcgtttcatggtccgtctcaatcagcaagcttagcttcctctgtttgacaacaaattttcagc |
207 |
Q |
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| T |
51964779 |
tgataaatacaaaggccaactgattgtaagattgaaagcgtttcatggtccgtctcaatcagcaagcttagcttcctctgtttgacaacaaattttcagc |
51964680 |
T |
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| Q |
208 |
tactttgtgcaaaataaataagagaggggggaaatttaattaaggtagtttgcatcaaaacaggatcttaagtagagagcacagttgtggagcccaataa |
307 |
Q |
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| T |
51964679 |
tactttgtgcaaaataaataagagagaggggaaatttaattaaggtagtttgcatcaaaacaggatcttaagtagagagcacagttgtggagcccaataa |
51964580 |
T |
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| Q |
308 |
gtgtctcagttgtctaatccatcaccatctaggcatttgtgattcttggcagaccttgtgttcttttggttttacttagctagataccacatannnnnnn |
407 |
Q |
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||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51964579 |
gtgtcccagttgtctaatccatcactatctaggcctttgtgattcttggcagaccttgtgttcttttggttttacttagctagctaccacataaacaaca |
51964480 |
T |
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| Q |
408 |
nnnnnnnnnnnnccggtcaagacacgattgagtgggggcatgcttattattatgtcacttagcctttgtctatcatttgaagaggaaatctgagattagt |
507 |
Q |
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| T |
51964479 |
acaacaacaacaccggtcaagacacgattgagtgggggcatgcttattattatgtcacttagccttagtctattatttgaagaggaaatctgagattagt |
51964380 |
T |
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| Q |
508 |
ttttcactttttattttgaaatgaaatcagaaagattataaaaactctgttga |
560 |
Q |
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| T |
51964379 |
ttttcactttttattttgaaatgaaatcagaaagattataaaaactatgttga |
51964327 |
T |
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