View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5511-Insertion-5 (Length: 490)

Name: NF5511-Insertion-5
Description: NF5511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5511-Insertion-5
NF5511-Insertion-5
[»] chr2 (14 HSPs)
chr2 (8-490)||(15781551-15782034)
chr2 (200-261)||(17142819-17142880)
chr2 (209-273)||(2256969-2257033)
chr2 (203-273)||(6471258-6471329)
chr2 (211-278)||(10058871-10058938)
chr2 (204-237)||(917360-917393)
chr2 (208-273)||(12599864-12599929)
chr2 (209-278)||(22608525-22608594)
chr2 (211-272)||(27152353-27152414)
chr2 (209-238)||(27412870-27412899)
chr2 (209-266)||(35372945-35373002)
chr2 (209-273)||(7206123-7206187)
chr2 (209-272)||(18936855-18936919)
chr2 (209-265)||(31815894-31815950)
[»] chr5 (9 HSPs)
chr5 (208-274)||(36105173-36105239)
chr5 (210-280)||(35109399-35109469)
chr5 (212-272)||(781864-781924)
chr5 (208-260)||(3738766-3738817)
chr5 (209-265)||(6489005-6489061)
chr5 (209-265)||(7112592-7112648)
chr5 (209-265)||(27721682-27721738)
chr5 (210-254)||(31308661-31308705)
chr5 (209-280)||(43354442-43354514)
[»] chr7 (12 HSPs)
chr7 (202-265)||(7994891-7994954)
chr7 (212-262)||(7481226-7481276)
chr7 (311-421)||(5712900-5713012)
chr7 (211-280)||(23069849-23069918)
chr7 (203-239)||(41469360-41469396)
chr7 (212-270)||(25226602-25226660)
chr7 (212-270)||(25236434-25236492)
chr7 (209-255)||(32062021-32062067)
chr7 (210-272)||(48007547-48007609)
chr7 (210-279)||(20521024-20521093)
chr7 (211-279)||(1627928-1627996)
chr7 (209-237)||(16355511-16355539)
[»] chr4 (14 HSPs)
chr4 (209-272)||(31041365-31041428)
chr4 (210-280)||(11269693-11269763)
chr4 (203-265)||(20098762-20098824)
chr4 (203-256)||(44918229-44918282)
chr4 (205-265)||(21317345-21317405)
chr4 (209-273)||(32180828-32180892)
chr4 (210-280)||(7371540-7371610)
chr4 (210-280)||(18635529-18635599)
chr4 (210-272)||(19124622-19124684)
chr4 (212-254)||(48171882-48171924)
chr4 (211-264)||(24921055-24921108)
chr4 (211-280)||(34595928-34595997)
chr4 (216-280)||(11144657-11144721)
chr4 (211-255)||(40847084-40847128)
[»] chr3 (12 HSPs)
chr3 (218-273)||(52089323-52089378)
chr3 (211-280)||(13042792-13042861)
chr3 (211-280)||(13050869-13050938)
chr3 (209-266)||(49600270-49600327)
chr3 (209-265)||(27185475-27185531)
chr3 (209-280)||(35191809-35191880)
chr3 (210-280)||(43796829-43796899)
chr3 (209-258)||(21967554-21967603)
chr3 (209-258)||(21989990-21990039)
chr3 (209-265)||(2078238-2078294)
chr3 (209-273)||(21506757-21506821)
chr3 (209-257)||(52535880-52535928)
[»] chr8 (9 HSPs)
chr8 (204-254)||(10982719-10982769)
chr8 (212-280)||(9019556-9019624)
chr8 (211-265)||(32421569-32421623)
chr8 (215-273)||(42829474-42829532)
chr8 (210-238)||(2114886-2114914)
chr8 (213-265)||(29546895-29546947)
chr8 (209-273)||(36781406-36781470)
chr8 (209-265)||(39821882-39821938)
chr8 (209-265)||(40482337-40482393)
[»] chr1 (15 HSPs)
chr1 (209-254)||(37013986-37014031)
chr1 (209-273)||(5280629-5280693)
chr1 (203-271)||(34766852-34766920)
chr1 (211-253)||(619427-619469)
chr1 (211-273)||(28039859-28039921)
chr1 (209-254)||(1091177-1091222)
chr1 (209-238)||(15729428-15729457)
chr1 (209-254)||(27172740-27172785)
chr1 (204-280)||(912301-912377)
chr1 (210-274)||(16580797-16580861)
chr1 (209-273)||(29506825-29506889)
chr1 (209-257)||(40535201-40535249)
chr1 (203-251)||(42267192-42267240)
chr1 (217-273)||(42767019-42767075)
chr1 (209-273)||(52441510-52441574)
[»] chr6 (7 HSPs)
chr6 (209-265)||(29283813-29283869)
chr6 (209-238)||(331920-331949)
chr6 (207-280)||(404159-404232)
chr6 (209-254)||(5040851-5040896)
chr6 (209-265)||(12412275-12412331)
chr6 (209-265)||(17151234-17151290)
chr6 (209-265)||(27834337-27834393)
[»] scaffold0262 (1 HSPs)
scaffold0262 (209-280)||(15922-15993)
[»] scaffold0309 (1 HSPs)
scaffold0309 (212-246)||(2852-2886)
[»] scaffold0238 (1 HSPs)
scaffold0238 (210-280)||(25388-25458)
[»] scaffold0118 (1 HSPs)
scaffold0118 (209-271)||(45410-45472)
[»] scaffold0012 (1 HSPs)
scaffold0012 (209-238)||(240289-240318)


Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 490
Target Start/End: Complemental strand, 15782034 - 15781551
Alignment:
Q  8 aaaagtctagttgctgtgaaaaagacggagagacaaaccctaannnnnnncgttgttgaggaaaactctaaattatttttgtttcttatttaccggtgaa 107  Q
    |||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||  |||||||||||| |||||||||||||| |||||    
T  15782034 aaaagtctagttgctgcgaaaaagacggagagacaaaccctaatttttttcgttgttgaggaaaatcctaaattattttggtttcttatttaccagtgaa 15781935  T
Q  108 aggtctttcaacttttggttgggagggtggatccaattagccttctagtagaaaacttctaatttcacaccccatagttacaaactacactcatgttgtt 207  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  15781934 aggtctttgaacttttggttgggagggtggatccaattagccttctagtagaaaacttctaatttcacaccccatagttacaaactatactcatgttgtc 15781835  T
Q  208 ttcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacaccnnnnnnnncaataaactagactcat-t 306  Q
    ||||| ||||||||||| |||||||||| |||||||||||||||||||||  ||||||||||| ||| |||||        ||| ||||||||||||| |    
T  15781834 ttcgtaagcttaactcaattggtagagataaaatataatgtatgcaaagttcggggtttgaacaccatacacc-aaaaaaacaaaaaactagactcatat 15781736  T
Q  307 gttgacaccc-ttgaaccccaaaaacaacatttaatgcaaatgaaataattattcataaatattcaaggtgatacgtcattattaactcaacatgcataa 405  Q
      |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  15781735 tgtgacaccctttgaaccccaaaaacaacatttaatgcaaatgaaacaattattcataaatattcaaggtgatatttcattattaactcaacatgtataa 15781636  T
Q  406 ttctgttttcataaaattttgcagcagaataaaaacatcgcaaggtctcagcaatatatctcaatctcaaaatacatcaattaaa 490  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15781635 ttctgttttcataaaattttgcagcagaataaaaacatctcaaggtctcagcaatatatctcaatctcaaaatacatcaattaaa 15781551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 17142819 - 17142880
Alignment:
Q  200 atgttgttttcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctgg 261  Q
    |||| ||| ||||||||||| |||||||||||| |||||  |||||| ||||||||||||||    
T  17142819 atgtggttctcgtgagcttagctcagttggtagtgacaatgtataatatatgcaaagtctgg 17142880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 2256969 - 2257033
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacccc 273  Q
    |||||||||||||||||||||||  |||||   ||||| ||||||| |||||||||| |||||||    
T  2256969 tcgtgagcttaactcagttggtatggacaatgcataatatatgcaaggtctggggttcgaacccc 2257033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 6471258 - 6471329
Alignment:
Q  203 ttgttttcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctgggg-tttgaacccc 273  Q
    ||||| |||| ||||||||||||||||||  |||||  ||||||||||||||  ||||||| ||||||||||    
T  6471258 ttgttctcgtaagcttaactcagttggtatggacaatgtataatgtatgcaagatctggggatttgaacccc 6471329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 10058871 - 10058938
Alignment:
Q  211 gtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagaca 278  Q
    |||||||||||||| |||||||||||||   ||||| |||||||||   |||||||||||||| ||||    
T  10058871 gtgagcttaactcaattggtagagacaatgcataatatatgcaaaggtcggggtttgaaccccggaca 10058938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 917393 - 917360
Alignment:
Q  204 tgttttcgtgagcttaactcagttggtagagaca 237  Q
    ||||| ||||||||||||||||||||||||||||    
T  917393 tgtttccgtgagcttaactcagttggtagagaca 917360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 12599929 - 12599864
Alignment:
Q  208 ttcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacccc 273  Q
    ||||| |||||||||||||| |||  ||||| | ||||| ||||||| |||||||||| |||||||    
T  12599929 ttcgtaagcttaactcagttagtatggacaatacataatatatgcaaggtctggggttcgaacccc 12599864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 22608525 - 22608594
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagaca 278  Q
    ||||||||||| ||||||||||||||||||   ||||| ||||||| || || ||||  |||||||||||    
T  22608525 tcgtgagcttagctcagttggtagagacaatgcataatatatgcaaggtatgaggttcaaaccccagaca 22608594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 27152353 - 27152414
Alignment:
Q  211 gtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccc 272  Q
    |||||||||||||||||||||| || ||   ||||| ||||||| |||||||||| ||||||    
T  27152353 gtgagcttaactcagttggtagggataatgcataatatatgcaaggtctggggttcgaaccc 27152414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 27412899 - 27412870
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaa 238  Q
    ||||||||||||||||||||||||||||||    
T  27412899 tcgtgagcttaactcagttggtagagacaa 27412870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 35373002 - 35372945
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggttt 266  Q
    |||||||| || |||||||||||  ||||| ||||||| ||||||| |||||||||||    
T  35373002 tcgtgagcatagctcagttggtaaggacaatatataatatatgcaaggtctggggttt 35372945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 7206123 - 7206187
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacccc 273  Q
    ||||||||||| ||||||||||||||||||   ||||| ||||||| ||| | ||||| ||||||    
T  7206123 tcgtgagcttagctcagttggtagagacaatgcataatatatgcaaggtccgaggtttaaacccc 7206187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 272
Target Start/End: Complemental strand, 18936919 - 18936855
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaa-tataatgtatgcaaagtctggggtttgaaccc 272  Q
    |||||||||||| |||||||||||||||||||  ||||| |||||||  | ||||||| ||||||    
T  18936919 tcgtgagcttaattcagttggtagagacaaaagcataatatatgcaagatttggggttcgaaccc 18936855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 31815950 - 31815894
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    |||||||||||||||||||||||| |||||   ||||| ||||||| ||| ||||||    
T  31815950 tcgtgagcttaactcagttggtagggacaatgcataatatatgcaaggtccggggtt 31815894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 36105173 - 36105239
Alignment:
Q  208 ttcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacccca 274  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||| |||||||||||||| ||||    
T  36105173 ttcgtgagcttaactcagttggtagagacaaagtataatacatgcaaggtctggggtttgaatccca 36105239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 35109399 - 35109469
Alignment:
Q  210 cgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    |||||||||||||||||||||| |||||| | ||||| ||||||| ||| | |||| ||| ||| ||||||    
T  35109399 cgtgagcttaactcagttggtaaagacaatacataatatatgcaaggtccgaggttcgaatcccggacacc 35109469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 781864 - 781924
Alignment:
Q  212 tgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccc 272  Q
    ||||||||||||||||| ||| |||||  |||||  ||||||| |||||||||| ||||||    
T  781864 tgagcttaactcagttgatagggacaatgtataaaatatgcaaggtctggggttcgaaccc 781924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 3738817 - 3738766
Alignment:
Q  208 ttcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctg 260  Q
    |||||||||||||||||||||||| ||||||  ||| || |||||||||||||    
T  3738817 ttcgtgagcttaactcagttggtatagacaatgtat-atatatgcaaagtctg 3738766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 6489005 - 6489061
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    ||||||||||| |||||||||||| |||||   ||||| ||||||| ||||||||||    
T  6489005 tcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtctggggtt 6489061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 7112592 - 7112648
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    |||||||||||||||| ||||||| || |||||||||| |||| || ||||| ||||    
T  7112592 tcgtgagcttaactcaattggtagggataaaatataatatatgtaaggtctgaggtt 7112648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 27721738 - 27721682
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    ||||||||||| ||||||||||||  ||||   ||||| ||||||||||||||||||    
T  27721738 tcgtgagcttagctcagttggtaggaacaatgcataatatatgcaaagtctggggtt 27721682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 31308705 - 31308661
Alignment:
Q  210 cgtgagcttaactcagttggtagagacaaaatataatgtatgcaa 254  Q
    |||||||||| ||||||||||| |||||| ||||||| |||||||    
T  31308705 cgtgagcttagctcagttggtaaagacaatatataatatatgcaa 31308661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 43354442 - 43354514
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataa-tgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    |||||| |||| |||||||| ||||||||| | |||| | ||||||||||| |||||| ||||||| ||||||    
T  43354442 tcgtgatcttagctcagttgatagagacaatacataaatatatgcaaagtccggggttcgaaccccggacacc 43354514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 7994954 - 7994891
Alignment:
Q  202 gttgttttcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    |||||| |||||||| ||||||||||||||| ||||||| ||||| |||| || ||||||||||    
T  7994954 gttgttctcgtgagcataactcagttggtagggacaaaacataatatatgtaaggtctggggtt 7994891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 7481226 - 7481276
Alignment:
Q  212 tgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggg 262  Q
    |||||||||||||||||||| |||||| | ||||||||||||| |||||||    
T  7481226 tgagcttaactcagttggtaaagacaatacataatgtatgcaaggtctggg 7481276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 311 - 421
Target Start/End: Complemental strand, 5713012 - 5712900
Alignment:
Q  311 acacccttgaaccccaaaaacaacatttaatgcaaatgaaataattattcataaatattcaaggtgatacgtcattattaactc--aacatgcataattc 408  Q
    |||||||||||||||| || ||| ||||||||||||| ||  ||||||||| ||  ||||||| || || ||| | |||  |||  ||||||||||||||    
T  5713012 acacccttgaaccccacaagcaatatttaatgcaaataaatcaattattcaaaagaattcaagatgttatgtcttcattttctcaaaacatgcataattc 5712913  T
Q  409 tgttttcataaaa 421  Q
     ||||||||||||    
T  5712912 agttttcataaaa 5712900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 23069918 - 23069849
Alignment:
Q  211 gtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    ||||||||| ||||||||||| |||||| | ||||| ||||||| || ||||||| ||||||| ||||||    
T  23069918 gtgagcttagctcagttggtaaagacaacacataatatatgcaaggtatggggttcgaaccccggacacc 23069849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 41469396 - 41469360
Alignment:
Q  203 ttgttttcgtgagcttaactcagttggtagagacaaa 239  Q
    |||||||||||||||||||||||||||||| ||||||    
T  41469396 ttgttttcgtgagcttaactcagttggtagggacaaa 41469360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 25226660 - 25226602
Alignment:
Q  212 tgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaac 270  Q
    |||||||||||||||||| | ||||||  |||||  ||||||||||||| |||||||||    
T  25226660 tgagcttaactcagttggcatagacaatgtataaaatatgcaaagtctgaggtttgaac 25226602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 25236492 - 25236434
Alignment:
Q  212 tgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaac 270  Q
    |||||||||||||||||| | ||||||  |||||  ||||||||||||| |||||||||    
T  25236492 tgagcttaactcagttggcatagacaatgtataaaatatgcaaagtctgaggtttgaac 25236434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 32062021 - 32062067
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaa 255  Q
    ||||||| ||||||||||||||||||||||  |||||| ||||||||    
T  32062021 tcgtgagattaactcagttggtagagacaatgtataatatatgcaaa 32062067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 48007609 - 48007547
Alignment:
Q  210 cgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccc 272  Q
    ||||||||||||||||||||||  |||||   ||||| ||||||| |||||| ||||||||||    
T  48007609 cgtgagcttaactcagttggtaatgacaatgcataatatatgcaaggtctggagtttgaaccc 48007547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 279
Target Start/End: Complemental strand, 20521093 - 20521024
Alignment:
Q  210 cgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacac 279  Q
    |||||||||| |||||||||||  |||||   ||||||||||||| ||| || ||||||||||| |||||    
T  20521093 cgtgagcttagctcagttggtaaggacaatccataatgtatgcaaggtccggcgtttgaaccccggacac 20521024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 1627996 - 1627928
Alignment:
Q  211 gtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacac 279  Q
    ||||||||||||||||||| | ||||||   || || ||||||| |||||| ||| |||||||||||||    
T  1627996 gtgagcttaactcagttggcaaagacaatgcatgatatatgcaaggtctggagttcgaaccccagacac 1627928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 16355511 - 16355539
Alignment:
Q  209 tcgtgagcttaactcagttggtagagaca 237  Q
    |||||||||||||||||||||||||||||    
T  16355511 tcgtgagcttaactcagttggtagagaca 16355539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 272
Target Start/End: Complemental strand, 31041428 - 31041365
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccc 272  Q
    |||||||||||||||| |||||||| ||||  |||||| ||||||| ||||||||||| |||||    
T  31041428 tcgtgagcttaactcatttggtagaaacaatgtataatatatgcaaggtctggggtttaaaccc 31041365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 11269693 - 11269763
Alignment:
Q  210 cgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    ||||||||||||| ||||||||  ||||| | ||||| ||||||| |||| ||||| ||||||||||||||    
T  11269693 cgtgagcttaacttagttggtaaggacaatacataatatatgcaaggtcttgggttcgaaccccagacacc 11269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 20098824 - 20098762
Alignment:
Q  203 ttgttttcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    |||| |||||||||||||||||||||| |||||||| | ||||| ||||||| || |||||||    
T  20098824 ttgtcttcgtgagcttaactcagttggcagagacaatacataatatatgcaatgtttggggtt 20098762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 44918282 - 44918229
Alignment:
Q  203 ttgttttcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaag 256  Q
    |||| |||||||| |||||||||||| ||||||||| ||||||| |||||||||    
T  44918282 ttgtcttcgtgagtttaactcagttgatagagacaatatataatatatgcaaag 44918229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 21317405 - 21317345
Alignment:
Q  205 gttttcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    ||||||||||||||| ||||||||||||||||||   ||||| ||||||| ||| ||||||    
T  21317405 gttttcgtgagcttagctcagttggtagagacaatgcataatatatgcaaggtcaggggtt 21317345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 32180828 - 32180892
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacccc 273  Q
    ||||||||||| ||||||||||| ||||||   ||||  |||||||||||||||||| |||||||    
T  32180828 tcgtgagcttagctcagttggtatagacaatgcataaaatatgcaaagtctggggttcgaacccc 32180892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 7371610 - 7371540
Alignment:
Q  210 cgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    ||||||||||||||||||| ||  ||||| | ||||| ||||||| ||| |||||| ||||||| ||||||    
T  7371610 cgtgagcttaactcagttgataaggacaatacataatatatgcaaggtccggggttcgaaccccggacacc 7371540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 18635529 - 18635599
Alignment:
Q  210 cgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    ||||||||||||||||||| ||  |||||   ||||| ||| ||| |||||||||||||| ||||||||||    
T  18635529 cgtgagcttaactcagttgataaggacaatgcataatatatacaaggtctggggtttgaatcccagacacc 18635599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 19124684 - 19124622
Alignment:
Q  210 cgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccc 272  Q
    ||||||||||||||||||| || |||||| | ||||| ||||||| ||||| |||| ||||||    
T  19124684 cgtgagcttaactcagttgataaagacaatacataatatatgcaaggtctgaggttcgaaccc 19124622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 48171882 - 48171924
Alignment:
Q  212 tgagcttaactcagttggtagagacaaaatataatgtatgcaa 254  Q
    |||||||||||||||||||||||||||  |||||| |||||||    
T  48171882 tgagcttaactcagttggtagagacaatgtataatatatgcaa 48171924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 24921055 - 24921108
Alignment:
Q  211 gtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggt 264  Q
    ||||| ||| |||||||||||| ||||| ||||||| ||||||| |||||||||    
T  24921055 gtgaggttagctcagttggtagggacaacatataatatatgcaaggtctggggt 24921108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 34595997 - 34595928
Alignment:
Q  211 gtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    ||||| |||||||||||||||  |||||   ||||| |||| |||||  |||||||||||||||||||||    
T  34595997 gtgagtttaactcagttggtaaggacaatgcataatatatgtaaagttcggggtttgaaccccagacacc 34595928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 11144721 - 11144657
Alignment:
Q  216 cttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    |||| |||||||| || ||||||   ||||| ||||||| |||||||||||||||||| ||||||    
T  11144721 cttacctcagttgataaagacaatgcataatatatgcaaggtctggggtttgaaccccggacacc 11144657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 40847128 - 40847084
Alignment:
Q  211 gtgagcttaactcagttggtagagacaaaatataatgtatgcaaa 255  Q
    |||||||||||||||||| ||||||||| | ||||| ||||||||    
T  40847128 gtgagcttaactcagttgatagagacaatacataatatatgcaaa 40847084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 52089323 - 52089378
Alignment:
Q  218 taactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacccc 273  Q
    ||||||||||||||||||||| ||||||| ||||||| || ||||||| |||||||    
T  52089323 taactcagttggtagagacaatatataatatatgcaaggtttggggttcgaacccc 52089378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 13042861 - 13042792
Alignment:
Q  211 gtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    ||||||||| ||||||||||| ||||||  |||||| ||||||| ||| |||||| |||||||| |||||    
T  13042861 gtgagcttagctcagttggtaaagacaatttataatatatgcaaggtccggggttcgaaccccaaacacc 13042792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 13050938 - 13050869
Alignment:
Q  211 gtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    ||||||||| ||||||||||| ||||||  |||||| ||||||| ||| |||||| |||||||| |||||    
T  13050938 gtgagcttagctcagttggtaaagacaatttataatatatgcaaggtccggggttcgaaccccaaacacc 13050869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 49600327 - 49600270
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggttt 266  Q
    ||||||||||| ||||||| |||||||||| | ||||| ||||||| |||||||||||    
T  49600327 tcgtgagcttagctcagttagtagagacaataaataatatatgcaaggtctggggttt 49600270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 27185475 - 27185531
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    ||||||||||| |||||||||||| ||||| | ||||| ||||||| ||||||||||    
T  27185475 tcgtgagcttagctcagttggtagggacaatacataatatatgcaaggtctggggtt 27185531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 35191880 - 35191809
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    ||||| ||||| |||||||||||  |||||   ||||| ||||||| |||||||||| ||||||||||||||    
T  35191880 tcgtgcgcttagctcagttggtaaggacaatgcataatatatgcaaggtctggggttcgaaccccagacacc 35191809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 43796899 - 43796829
Alignment:
Q  210 cgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    ||||||||||||||||||||||  |||||  ||||||  |||||||||||| |||| ||| ||| ||||||    
T  43796899 cgtgagcttaactcagttggtatggacaatgtataatacatgcaaagtctgaggttcgaatccctgacacc 43796829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 21967554 - 21967603
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtc 258  Q
    |||||||||||||||||||||||  |||||  |||||| |||||||||||    
T  21967554 tcgtgagcttaactcagttggtaaggacaatgtataatatatgcaaagtc 21967603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 258
Target Start/End: Original strand, 21989990 - 21990039
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtc 258  Q
    |||||||||||||||||||||||  |||||  |||||| |||||||||||    
T  21989990 tcgtgagcttaactcagttggtaaggacaatgtataatatatgcaaagtc 21990039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 2078238 - 2078294
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    |||||| |||||||||||||||||||||||   ||||| ||||||| || |||||||    
T  2078238 tcgtgaacttaactcagttggtagagacaatgcataatatatgcaaggtttggggtt 2078294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 21506821 - 21506757
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacccc 273  Q
    ||||||||||| |||||||||||  |||||   ||||  ||||||| ||||||||||||||||||    
T  21506821 tcgtgagcttagctcagttggtatggacaatgcataaaatatgcaaggtctggggtttgaacccc 21506757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 52535928 - 52535880
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagt 257  Q
    ||||||||||||||||||| ||| |||||| | ||||| ||||||||||    
T  52535928 tcgtgagcttaactcagttagtatagacaatacataatatatgcaaagt 52535880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 10982719 - 10982769
Alignment:
Q  204 tgttttcgtgagcttaactcagttggtagagacaaaatataatgtatgcaa 254  Q
    ||||||||||||||||||||||||||||  ||||| ||||||| |||||||    
T  10982719 tgttttcgtgagcttaactcagttggtatggacaatatataatatatgcaa 10982769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 9019624 - 9019556
Alignment:
Q  212 tgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    |||||||||| ||||||||| ||||||   ||||| ||||||| |||| |||||||||||||| |||||    
T  9019624 tgagcttaacgcagttggtaaagacaatgcataatatatgcaaggtcttgggtttgaaccccaaacacc 9019556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 32421569 - 32421623
Alignment:
Q  211 gtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    |||||||||||||||||||||  ||||| ||||||| ||||||| ||| ||||||    
T  32421569 gtgagcttaactcagttggtatggacaatatataatatatgcaaggtccggggtt 32421623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 42829532 - 42829474
Alignment:
Q  215 gcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacccc 273  Q
    ||||| |||||||||||  ||||||||||||  ||||||| |||||||||| |||||||    
T  42829532 gcttagctcagttggtatggacaaaatataaaatatgcaaggtctggggttcgaacccc 42829474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 238
Target Start/End: Original strand, 2114886 - 2114914
Alignment:
Q  210 cgtgagcttaactcagttggtagagacaa 238  Q
    |||||||||||||||||||||||||||||    
T  2114886 cgtgagcttaactcagttggtagagacaa 2114914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 29546895 - 29546947
Alignment:
Q  213 gagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    |||||||||||||||| ||| ||||| | ||||| ||||||| ||||||||||    
T  29546895 gagcttaactcagttgatagggacaatagataatatatgcaaggtctggggtt 29546947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 36781406 - 36781470
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacccc 273  Q
    |||||||| || |||||||||||  ||||| | ||||| ||||||||||| ||||||| ||||||    
T  36781406 tcgtgagcctagctcagttggtaaggacaatacataatatatgcaaagtccggggtttaaacccc 36781470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 39821882 - 39821938
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    ||||||||||| |||||||||||| |||||   ||||| ||||||| ||||||||||    
T  39821882 tcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtctggggtt 39821938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 40482337 - 40482393
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    |||||||||||| | |||||||| ||| || ||||||||||||||| ||| ||||||    
T  40482337 tcgtgagcttaatttagttggtatagataatatataatgtatgcaaggtccggggtt 40482393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 37013986 - 37014031
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaa 254  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||    
T  37013986 tcgtgagcttaactcagttggtagggacaaaatataaaatatgcaa 37014031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 5280629 - 5280693
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacccc 273  Q
    ||||||||||||||||||||| |||||||    ||||| ||||||| |||||||||| |||||||    
T  5280629 tcgtgagcttaactcagttggaagagacagtgcataatatatgcaaggtctggggttcgaacccc 5280693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 34766852 - 34766920
Alignment:
Q  203 ttgttttcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacc 271  Q
    |||| ||||||||||||||||||||||||  |||||  ||||||  |||||| |||||||||| |||||    
T  34766852 ttgtcttcgtgagcttaactcagttggtatggacaatgtataatacatgcaaggtctggggttcgaacc 34766920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 619469 - 619427
Alignment:
Q  211 gtgagcttaactcagttggtagagacaaaatataatgtatgca 253  Q
    ||||||||||||||||||||||||||||  |||||| ||||||    
T  619469 gtgagcttaactcagttggtagagacaatgtataatatatgca 619427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 28039921 - 28039859
Alignment:
Q  211 gtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacccc 273  Q
    |||||||||||||||||||||  |||||   ||||| ||||||| ||||| ||||||||||||    
T  28039921 gtgagcttaactcagttggtaaggacaatgcataatatatgcaaggtctgaggtttgaacccc 28039859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 1091177 - 1091222
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaa 254  Q
    ||||||||||||||||||||||| ||||||   |||||||||||||    
T  1091177 tcgtgagcttaactcagttggtatagacaatgcataatgtatgcaa 1091222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 238
Target Start/End: Original strand, 15729428 - 15729457
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaa 238  Q
    ||||||||||||||||||||||||||||||    
T  15729428 tcgtgagcttaactcagttggtagagacaa 15729457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 27172785 - 27172740
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaa 254  Q
    |||||||||||||||||||||||  ||||||| ||||| |||||||    
T  27172785 tcgtgagcttaactcagttggtatggacaaaacataatatatgcaa 27172740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 912301 - 912377
Alignment:
Q  204 tgttttcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    ||||||||| |||||||| |||||| || || |||  |||||| |||  || ||||| |||||||||||||||||||    
T  912301 tgttttcgtaagcttaacacagttgataaagtcaatgtataatatatataaggtctgaggtttgaaccccagacacc 912377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 16580861 - 16580797
Alignment:
Q  210 cgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacccca 274  Q
    ||||||||||| ||||||||||  |||||  |||||| ||||||| |||||||||| ||| ||||    
T  16580861 cgtgagcttaattcagttggtatggacaatgtataatatatgcaaggtctggggttcgaatccca 16580797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 29506825 - 29506889
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacccc 273  Q
    |||||||||||||| |||||||| |||||| | ||||| ||||||| |||  ||||| |||||||    
T  29506825 tcgtgagcttaacttagttggtatagacaatacataatatatgcaaggtccagggttcgaacccc 29506889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 40535249 - 40535201
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagt 257  Q
    |||||||||||||||||||||||| | ||| ||| ||| ||||||||||    
T  40535249 tcgtgagcttaactcagttggtagggtcaatataaaatatatgcaaagt 40535201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 42267192 - 42267240
Alignment:
Q  203 ttgttttcgtgagcttaactcagttggtagagacaaaatataatgtatg 251  Q
    ||||| |||||||||||  ||||||||||||||||| ||||||| ||||    
T  42267192 ttgttctcgtgagcttagttcagttggtagagacaacatataatatatg 42267240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 42767019 - 42767075
Alignment:
Q  217 ttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacccc 273  Q
    |||| ||||||| ||  ||||| | ||||||||||||||||||||||||| ||||||    
T  42767019 ttaattcagttgatatggacaatagataatgtatgcaaagtctggggtttaaacccc 42767075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 52441574 - 52441510
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacccc 273  Q
    ||||||||||| ||||||||||| ||||||   ||||| ||||||| ||| || |||||||||||    
T  52441574 tcgtgagcttagctcagttggtatagacaatgcataatatatgcaaggtccggcgtttgaacccc 52441510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 29283813 - 29283869
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    |||| |||||||||||||||||||||||||  |||||| ||||||| |||| |||||    
T  29283813 tcgtaagcttaactcagttggtagagacaatgtataatatatgcaaggtctagggtt 29283869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 331949 - 331920
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaa 238  Q
    ||||||||||||||||||||||||||||||    
T  331949 tcgtgagcttaactcagttggtagagacaa 331920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 404159 - 404232
Alignment:
Q  207 tttcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    |||||||||||||||| ||||||||  |||||   ||||| ||||||| ||| | |||| ||||||||||||||    
T  404159 tttcgtgagcttaacttagttggtaaggacaatgcataatatatgcaatgtccgaggttcgaaccccagacacc 404232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 5040896 - 5040851
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaa 254  Q
    ||||||||||| ||||||||||| |||||||| ||||| |||||||    
T  5040896 tcgtgagcttagctcagttggtaaagacaaaacataatatatgcaa 5040851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 12412275 - 12412331
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    |||||||||||||| |||||||||||||||   ||||| ||||||| ||||| ||||    
T  12412275 tcgtgagcttaacttagttggtagagacaatgcataatatatgcaaggtctgcggtt 12412331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 17151234 - 17151290
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    ||||||||||| || ||||||||| ||||| | ||||| ||||||| ||||||||||    
T  17151234 tcgtgagcttagctaagttggtagtgacaatacataatatatgcaaggtctggggtt 17151290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 27834337 - 27834393
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtt 265  Q
    |||||||||||||||||| ||||| |||||   ||||| ||||||| ||||||||||    
T  27834337 tcgtgagcttaactcagtgggtagggacaaggcataatatatgcaaggtctggggtt 27834393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 280
Target Start/End: Complemental strand, 15993 - 15922
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    |||||||||||||||| ||||||  |||||  |||||| ||||||| ||||||||||  |||||||| ||||    
T  15993 tcgtgagcttaactcaattggtaaggacaatgtataatatatgcaaggtctggggttcaaaccccagccacc 15922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 246
Target Start/End: Complemental strand, 2886 - 2852
Alignment:
Q  212 tgagcttaactcagttggtagagacaaaatataat 246  Q
    |||||||||||||||||||| ||||||||||||||    
T  2886 tgagcttaactcagttggtaaagacaaaatataat 2852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 25388 - 25458
Alignment:
Q  210 cgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaaccccagacacc 280  Q
    ||||||||||||||||||||||  |||||   ||||| ||||||| |||  ||||| ||||||||||||||    
T  25388 cgtgagcttaactcagttggtaaggacaatgcataatatatgcaaggtccagggttcgaaccccagacacc 25458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 45410 - 45472
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaaaatataatgtatgcaaagtctggggtttgaacc 271  Q
    ||||||||||||||||||||||   ||||| | ||||| ||||||| ||| ||||||||||||    
T  45410 tcgtgagcttaactcagttggtttggacaatacataatatatgcaaggtccggggtttgaacc 45472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 240318 - 240289
Alignment:
Q  209 tcgtgagcttaactcagttggtagagacaa 238  Q
    ||||||||||||||||||||||||||||||    
T  240318 tcgtgagcttaactcagttggtagagacaa 240289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University