View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5511-Insertion-6 (Length: 284)
Name: NF5511-Insertion-6
Description: NF5511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5511-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 53 - 284
Target Start/End: Complemental strand, 45746877 - 45746646
Alignment:
| Q |
53 |
agtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatctcagcaagagacttggcttggaaaataaacaagtcaaattctggtttcaga |
152 |
Q |
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| T |
45746877 |
agtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcaga |
45746778 |
T |
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| Q |
153 |
atcgtcgaacccaaatgaaggtgaatgttaaatatcatgttccattttcttttaaaaatctgcactcgcgatctgagttgtggcattaaggtttttaatg |
252 |
Q |
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| T |
45746777 |
atcgtcgaacccaaatgaaggtgaatgttaaatatcatgttccattttcttttaaaaatctgcagtcgcgatctgagttgcggcattaaggtttttaatg |
45746678 |
T |
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| Q |
253 |
tctccacaacaaggttgcctaagctgcttttg |
284 |
Q |
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| T |
45746677 |
tctccacaacaaggttgcctaagccgcttttg |
45746646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 45746920 - 45746890
Alignment:
| Q |
7 |
atgtggttgatgtgttttgttcttttattgg |
37 |
Q |
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| T |
45746920 |
atgtggttgatgtgttttgttcttttattgg |
45746890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 53 - 174
Target Start/End: Complemental strand, 10081 - 9960
Alignment:
| Q |
53 |
agtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatctcagcaagagacttggcttggaaaataaacaagtcaaattctggtttcaga |
152 |
Q |
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| T |
10081 |
agtttcttcaaggagtgtccacatcctgatgagaagcaaagaactgaccttagcaagaagcttggcttggcaaacaaacaagtcaagttctggtttcaga |
9982 |
T |
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| Q |
153 |
atcgtcgaacccaaatgaaggt |
174 |
Q |
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| T |
9981 |
atcggcgaactcagatgaaggt |
9960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 28597614 - 28597652
Alignment:
| Q |
59 |
ttcaaggagtgtcctcatcctgatgaaaaacaaaggttg |
97 |
Q |
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| T |
28597614 |
ttcaaggagtgtcctcatcctgatgagaaacaaaggttg |
28597652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 12327178 - 12327055
Alignment:
| Q |
53 |
agtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatctcagcaagagacttggcttggaaaataaacaagtcaaattctggtttcaga |
152 |
Q |
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||||| || |||||||||||||| || ||||| |||||||| ||||| || ||||| || ||| | ||||||| | |||||| || || ||||| || | |
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| T |
12327178 |
agtttgtttaaggagtgtcctcacccagatgagaaacaaagattggaacttagcaaaaggctttgtttggaaacaagacaagttaagttttggttccaaa |
12327079 |
T |
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| Q |
153 |
atcgtcgaacccaaatgaaggtga |
176 |
Q |
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| T |
12327078 |
atcgaagaacacaaatgaaggtga |
12327055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 174
Target Start/End: Complemental strand, 28599429 - 28599320
Alignment:
| Q |
65 |
gagtgtcctcatcctgatgaaaaacaaaggttggatctcagcaagagacttggcttggaaaataaacaagtcaaattctggtttcagaatcgtcgaaccc |
164 |
Q |
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| T |
28599429 |
gagtgtcctcatcctgatgaaaaacaaagacttgaacttagcaaaaggctttgtttggaaacaagacaagtcaagttttggttccaaaatagaagaacac |
28599330 |
T |
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| Q |
165 |
aaatgaaggt |
174 |
Q |
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| T |
28599329 |
aaatgaaggt |
28599320 |
T |
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