View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5511_low_1 (Length: 344)
Name: NF5511_low_1
Description: NF5511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5511_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 172 - 337
Target Start/End: Original strand, 28692686 - 28692851
Alignment:
| Q |
172 |
ccttcagtatctaagaaagcagtgagggaggtgttgttttgtggaagggggtgagaataggaataagagttttgaagatgagagatgaaagacctaagtt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28692686 |
ccttcagtatctaagaaagcagtgagggaggtgttgttttgtggaagggggtgagaataggaataagagttttgaagatgagagatgaaagacctaagtt |
28692785 |
T |
|
| Q |
272 |
catgtttgagatagtcatgttgattagggtaaagggtttcaagcatctccaactcttcctttgctt |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28692786 |
catgtttgagatagtcatgttgattagggtaaagggtttcaagcatctccaactcttcctttgctt |
28692851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 28692535 - 28692640
Alignment:
| Q |
20 |
ctctctctggtaaagcaagttgaatactctttatatgctccaagcttgttgattctgcattacaagaatagaataaaacaacctcaaaaaccatgtttag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28692535 |
ctctctctggtaaagcaagttgaatactctttatatgctccaagcttgttgattctgcattacaagaatagaataaaacaacctcaaaaaccatgtttcg |
28692634 |
T |
|
| Q |
120 |
cagcac |
125 |
Q |
| |
|
|||||| |
|
|
| T |
28692635 |
cagcac |
28692640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University