View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5512-Insertion-2 (Length: 757)
Name: NF5512-Insertion-2
Description: NF5512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5512-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 8 - 475
Target Start/End: Original strand, 42824585 - 42825050
Alignment:
| Q |
8 |
taggtaacataaagatgcatgacact--agcgagtctcggagtttcctaaaaattagtagtatgtttgtttgtgaagacagttggcaaccaaataaatat |
105 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42824585 |
taggtaacataaagatgcatgacactctagcgagtctcggagtttcctaaaaattagtagtatgtttgtttgtgaagacagttggcaaccaaataaatat |
42824684 |
T |
|
| Q |
106 |
tacagcagcaacaacatcatatccttgctggaaaccttgaagatttttcattaaattgaagtcaatatcatattctattcccaccccccaaaagtttatc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42824685 |
tacagcagcaacaacatcatatccttgctggaaaccttgaagatttttcattaaattgaagtcaatatcatattctattcccaccccccaaaagtttatc |
42824784 |
T |
|
| Q |
206 |
ctattacttggcattatgaattcattcatattaattctaacgtactaaaaataattcaaacaaaggaaaacagaacataatttatatcgaaaaggactca |
305 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42824785 |
ctactacttggcattatgaattc----atattaattctaacgtactaaaaataattcaaacaaaggaaaacagaacataatttatattgaaaaggactca |
42824880 |
T |
|
| Q |
306 |
catctttaagatcttcatcggttgagtatccaaatttcagcattgttgctgccacatacacagctaaactaaccttatttgcaaatttgtgacagacctg |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42824881 |
catctttaagatcttcatcggttgagtatccaaatttcagcattgttgctgccacatacacagctaaactaaccttatttgcaaatttgtgacaggcctg |
42824980 |
T |
|
| Q |
406 |
agtaatactcaaccctcctgcactgtgtccaaccaatataacctatacaaaccaaacatatcatatgttc |
475 |
Q |
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| T |
42824981 |
agtaatactcaaccctcctgcactgtgtccaaccaatataacctatacaaaccaaacatatcatatgttc |
42825050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 538 - 757
Target Start/End: Original strand, 42825113 - 42825332
Alignment:
| Q |
538 |
aggtggggagaaagggaatgaaaatgaaaatatacatacctgttcattatctggtaaagcagacatgaaatcaataacaggtttattataatcatcaaaa |
637 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42825113 |
aggtggggagaaagggaatgaaaatgaaaatatacatacctgttcattatctggtaaagcagacatgaaatcaataacaggtttattataatcatcaaaa |
42825212 |
T |
|
| Q |
638 |
gttagaatagaatcagcatcagattgatcaattccactacttttaaggtctatgcatgagactttgtacccagaattctccataaggcacttaattttgt |
737 |
Q |
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| T |
42825213 |
gttagaatagaatcagcatcagattgatcaattccactacttttaaggtctatgcatgagactttgtacccagaattctccataaggcacttaattttgt |
42825312 |
T |
|
| Q |
738 |
accagcaccaacctccacca |
757 |
Q |
| |
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|||||||||||||||||||| |
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| T |
42825313 |
accagcaccaacctccacca |
42825332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 575 - 753
Target Start/End: Complemental strand, 28794979 - 28794801
Alignment:
| Q |
575 |
acctgttcattatctggtaaagcagacatgaaatcaataacaggtttattataatcatcaaaagttagaatagaatcagcatcagattgatcaattccac |
674 |
Q |
| |
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||||||||||| || || |||| |||||||||||| | | |||| ||||||||||||||||| |||| |||||||||||||||||||| |||||| |
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| T |
28794979 |
acctgttcattttcaggcaaagaagacatgaaatccaagaggggttgattataatcatcaaaagaaagaacagaatcagcatcagattgattaattcctg |
28794880 |
T |
|
| Q |
675 |
tacttttaaggtctatgcatgagactttgtacccagaattctccataaggcacttaattttgtaccagcaccaacctcc |
753 |
Q |
| |
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|||||| ||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
28794879 |
cacttttgaggtctatgcaagagactttgtagccagaattctccataaggcacctgattttgtaccagcaccaacctcc |
28794801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 301 - 450
Target Start/End: Complemental strand, 28795411 - 28795262
Alignment:
| Q |
301 |
actcacatctttaagatcttcatcggttgagtatccaaatttcagcattgttgctgccacatacacagctaaactaaccttatttgcaaatttgtgacag |
400 |
Q |
| |
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|||||||||| | ||||||||||| || | |||| ||||| ||||| ||||| ||||||||||| ||||||| | || || |||||||||||||| |
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| T |
28795411 |
actcacatctcttagatcttcatctgtacaaaatcccaatttgagcatagttgcagccacatacactgctaaacatattttcttggcaaatttgtgacaa |
28795312 |
T |
|
| Q |
401 |
acctgagtaatactcaaccctcctgcactgtgtccaaccaatataaccta |
450 |
Q |
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| || ||||||||||||||||||||||| ||||| |||||||| ||||| |
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| T |
28795311 |
gcatgggtaatactcaaccctcctgcactatgtcccaccaatattaccta |
28795262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 303 - 385
Target Start/End: Original strand, 31590561 - 31590641
Alignment:
| Q |
303 |
tcacatctttaagatcttcatcggttgagtatccaaatttcagcattgttgctgccacatacacagctaaactaaccttattt |
385 |
Q |
| |
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|||||||||||||||||| |||||||||||||| || |||||||| || |||||||| |||| |||||| |||||||||| |
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| T |
31590561 |
tcacatctttaagatctttgtcggttgagtatcctaacttcagcatagtcgctgccac--acactgctaaatgaaccttattt |
31590641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 395
Target Start/End: Original strand, 4486660 - 4486755
Alignment:
| Q |
300 |
gactcacatctttaagatcttcatcggttgagtatccaaatttcagcattgttgctgccacatacacagctaaactaaccttatttgcaaatttgt |
395 |
Q |
| |
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||||| ||||||||||||||| ||| ||||||||||| || ||| | | ||| |||||||| |||| |||| | ||||||||||||||| |||| |
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| T |
4486660 |
gactcccatctttaagatctttatcagttgagtatcctaacttcgggagagtttctgccacacacactgctacatgaaccttatttgcaaacttgt |
4486755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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