View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5512-Insertion-4 (Length: 389)
Name: NF5512-Insertion-4
Description: NF5512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5512-Insertion-4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 34387805 - 34387423
Alignment:
| Q |
7 |
aaaatccgcggtggaattgttaccgacgattgaaatcaacgagagtcatatgaatgtagaatcacattgtgccgtttgtaaagagccttttgaacttgga |
106 |
Q |
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| T |
34387805 |
aaaatccgcggtggaattgttaccgacgattgaaatcaacgagagtcatatgaatgtagaatcacattgtgccgtttgtaaagagccttttgaacttgga |
34387706 |
T |
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| Q |
107 |
atttcagctagtgaaatgccatgcaaacacatataccataatgaatgcatacttccatggcttgcaattcaaaattcttgtcccgtttgtcgacatgaat |
206 |
Q |
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| T |
34387705 |
atttcagctagggaaatgccatgcaaacacatataccataatgaatgcatacttccatggcttgcaattcaaaattcttgtcccgtttgtcgacatgaat |
34387606 |
T |
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| Q |
207 |
tgccttgtgaatcaccacaaattaacaatgaaatttccaattcgaatgaagacgagaatgttgggttgacaatttggaggttaccgggtggagggtttgc |
306 |
Q |
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| T |
34387605 |
tgccttgtgaatcaccacaaattaacaatgaaatttccaattcgaatgaagacgagaatgttgggttgacaatttggaggttaccgggtggagggtttgc |
34387506 |
T |
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| Q |
307 |
cgttggaagattttctggtgatggaggtgggggtgagaatagaatggagcatcctattgtttacacagaagtggatggtgcat |
389 |
Q |
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| T |
34387505 |
cgttggaagattttctggtgacggaggtgggggtgagaatagaatggagcatcctattgtttacacagaagtggatggtgcat |
34387423 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 319
Target Start/End: Complemental strand, 41697456 - 41697403
Alignment:
| Q |
266 |
gttgggttgacaatttggaggttaccgggtggagggtttgccgttggaagattt |
319 |
Q |
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| T |
41697456 |
gttggattgacaatatggaggttaccgggaggtggatttgctgttggaagattt |
41697403 |
T |
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