View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5512-Insertion-6 (Length: 344)
Name: NF5512-Insertion-6
Description: NF5512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5512-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 344
Target Start/End: Complemental strand, 23896003 - 23895667
Alignment:
| Q |
8 |
ttgtaagtatgatacaaagaattagaactgacaggatcgacaaaatgtagagactgagtgaattttgttagatgttgcactcagtcttcccctaaatggt |
107 |
Q |
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| T |
23896003 |
ttgtaagtatgatacaaagaattagaactgacaggatcgacaaaatgtagagactgagtgaattttgttagatgttgcactcagtcttcccctaaatggt |
23895904 |
T |
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| Q |
108 |
gttcttgatgctgaaaagctttttgatacactagttactgaatatggtgtgtaattttggtgtggcttttgtaatgtttctttgggtagtttgagaaatg |
207 |
Q |
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| T |
23895903 |
gttcttgatgctgaaaagctttttgatacactagttactgaatatggtgtgtaatcttggtgtggcttttgtaatgtttctttgggtagtttgagaaatg |
23895804 |
T |
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| Q |
208 |
atgagtctatggagagctcaacaggtgtaaaaaattgtatctacgtaccttaattctacttagtttaatatatttcttgaatcttttcaaaacgagccaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23895803 |
atgagtctatggagagctcaacaggtgtaaaaaattgtatctatgtaccttaattctacttagtttaatatatttcttgaatcttttcaaaacatgccaa |
23895704 |
T |
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| Q |
308 |
ttttttgtttgaattggttgaaatatgtcctatataa |
344 |
Q |
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||||| ||||||||||||||||||||||||| ||||| |
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| T |
23895703 |
tttttggtttgaattggttgaaatatgtcctctataa |
23895667 |
T |
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