View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5512-Insertion-7 (Length: 338)

Name: NF5512-Insertion-7
Description: NF5512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5512-Insertion-7
NF5512-Insertion-7
[»] chr2 (3 HSPs)
chr2 (8-325)||(16488307-16488624)
chr2 (43-93)||(10618962-10619012)
chr2 (43-96)||(44439268-44439321)
[»] chr6 (4 HSPs)
chr6 (45-96)||(1485164-1485215)
chr6 (43-96)||(2234529-2234582)
chr6 (43-96)||(30926796-30926849)
chr6 (43-96)||(31305865-31305918)
[»] chr4 (6 HSPs)
chr4 (43-96)||(33843991-33844044)
chr4 (48-96)||(4243406-4243454)
chr4 (111-151)||(29632561-29632601)
chr4 (42-95)||(2206849-2206902)
chr4 (25-93)||(2635159-2635227)
chr4 (9-41)||(33560662-33560694)
[»] chr7 (1 HSPs)
chr7 (46-96)||(27571879-27571929)
[»] chr3 (5 HSPs)
chr3 (43-91)||(35058375-35058423)
chr3 (44-96)||(44958624-44958676)
chr3 (45-96)||(35264429-35264480)
chr3 (54-96)||(46853552-46853594)
chr3 (25-78)||(40147886-40147939)
[»] chr1 (1 HSPs)
chr1 (43-84)||(47892418-47892459)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 325
Target Start/End: Original strand, 16488307 - 16488624
Alignment:
Q  8 gttggttgctctcgtgtagaattgattttgcctccagctagaaattggagctgttgattctagaattgattataacaatcaaatttattctagagctgta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16488307 gttggttgctctcgtgtagaattgattttgcctccagctagaaattggagctgttgattctagaattgattataacaatcaaatttattctagagctgta 16488406  T
Q  108 tttattatgcttgcataaaaacttcatttttatttgatcttattatgctgaagatgcttgtattgattggtgatagtgttttgcttagtacatgtttgga 207  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16488407 tttattatgcttgcataaaaactttatttttatttgattttattatgctgaagatgcttgtattgattggtgatagtgttttgcttagtacatgtttgga 16488506  T
Q  208 ttcacttccgggagacccaaaagtgatttttgtttgtttgggttcgtgattagaacggattttgactctagatttgatcttaaattgattaatccttttg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16488507 ttcacttccgggagacccaaaagtgatttttgtttgtttgggttcgtgattagaatggattttgactctagatttgatcttaaattgattaatccttttg 16488606  T
Q  308 gtaaatgctgctagtttt 325  Q
    ||||||| ||||||||||    
T  16488607 gtaaatggtgctagtttt 16488624  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 10619012 - 10618962
Alignment:
Q  43 agctagaaattggagctgttgattctagaattgattataacaatcaaattt 93  Q
    ||||||||||| ||||| ||||||||| |||||||| ||||| ||||||||    
T  10619012 agctagaaattagagcttttgattctataattgattttaacactcaaattt 10618962  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 44439268 - 44439321
Alignment:
Q  43 agctagaaattggagctgttgattctagaattgattataacaatcaaatttatt 96  Q
    ||||| || |||||||| ||||||||| |||||||| ||||| |||||||||||    
T  44439268 agctaaaatttggagcttttgattctaaaattgattttaacactcaaatttatt 44439321  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 1485215 - 1485164
Alignment:
Q  45 ctagaaattggagctgttgattctagaattgattataacaatcaaatttatt 96  Q
    ||||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  1485215 ctagaaattggagcttttgattctagaattgattttaacactcaaatttatt 1485164  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 2234529 - 2234582
Alignment:
Q  43 agctagaaattggagctgttgattctagaattgattataacaatcaaatttatt 96  Q
    ||||| ||| || |||| |||||||||||||||||| ||||| |||||||||||    
T  2234529 agctaaaaactgaagcttttgattctagaattgattttaacactcaaatttatt 2234582  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 30926849 - 30926796
Alignment:
Q  43 agctagaaattggagctgttgattctagaattgattataacaatcaaatttatt 96  Q
    ||||||||||||||| | || ||||||||||||||| | ||| |||||||||||    
T  30926849 agctagaaattggagttttttattctagaattgatttttacactcaaatttatt 30926796  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 31305918 - 31305865
Alignment:
Q  43 agctagaaattggagctgttgattctagaattgattataacaatcaaatttatt 96  Q
    ||||| ||||||||||| ||||||||||||||||||   ||| |||||||||||    
T  31305918 agctaaaaattggagcttttgattctagaattgatttatacactcaaatttatt 31305865  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 33843991 - 33844044
Alignment:
Q  43 agctagaaattggagctgttgattctagaattgattataacaatcaaatttatt 96  Q
    ||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||    
T  33843991 agctagaaattggagcttttgattctaaaattgattttaacactcaaatttatt 33844044  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 4243406 - 4243454
Alignment:
Q  48 gaaattggagctgttgattctagaattgattataacaatcaaatttatt 96  Q
    |||||||||||| |||||||||||||||||| | ||| |||||||||||    
T  4243406 gaaattggagcttttgattctagaattgatttttacactcaaatttatt 4243454  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 29632561 - 29632601
Alignment:
Q  111 attatgcttgcataaaaacttcatttttatttgatcttatt 151  Q
    ||||||||||||| | |||||||||||||||||||||||||    
T  29632561 attatgcttgcattagaacttcatttttatttgatcttatt 29632601  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 2206849 - 2206902
Alignment:
Q  42 cagctagaaattggagctgttgattctagaattgattataacaatcaaatttat 95  Q
    |||||| ||||||||||| |||||| ||||||||| | ||||| ||||||||||    
T  2206849 cagctaaaaattggagcttttgattttagaattgactttaacactcaaatttat 2206902  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 2635159 - 2635227
Alignment:
Q  25 agaattgattttgcctccagctagaaattggagctgttgattctagaattgattataacaatcaaattt 93  Q
    |||||||||| ||| |  ||||||| ||||||||| |||| ||||||||||||| ||| | ||||||||    
T  2635159 agaattgattatgcttgaagctagagattggagcttttgagtctagaattgattttaagactcaaattt 2635227  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 33560694 - 33560662
Alignment:
Q  9 ttggttgctctcgtgtagaattgattttgcctc 41  Q
    ||||||||||||| |||||||||||||||||||    
T  33560694 ttggttgctctcgagtagaattgattttgcctc 33560662  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 27571879 - 27571929
Alignment:
Q  46 tagaaattggagctgttgattctagaattgattataacaatcaaatttatt 96  Q
    |||||||||||||| |||||||||||||||||| ||||| |||| ||||||    
T  27571879 tagaaattggagcttttgattctagaattgattttaacactcaagtttatt 27571929  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 35058375 - 35058423
Alignment:
Q  43 agctagaaattggagctgttgattctagaattgattataacaatcaaat 91  Q
    ||||||||||| ||||| |||||||||||||||||| ||||| ||||||    
T  35058375 agctagaaattcgagcttttgattctagaattgattttaacactcaaat 35058423  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 44958676 - 44958624
Alignment:
Q  44 gctagaaattggagctgttgattctagaattgattataacaatcaaatttatt 96  Q
    |||||||||||||||| |||||||||||| ||||| ||||| |||| ||||||    
T  44958676 gctagaaattggagcttttgattctagaaatgattttaacactcaactttatt 44958624  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 35264480 - 35264429
Alignment:
Q  45 ctagaaattggagctgttgattctagaattgattataacaatcaaatttatt 96  Q
    ||||||||| ||||| |||||||||||||||||| ||||| | |||||||||    
T  35264480 ctagaaattagagcttttgattctagaattgattttaacacttaaatttatt 35264429  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 46853594 - 46853552
Alignment:
Q  54 ggagctgttgattctagaattgattataacaatcaaatttatt 96  Q
    |||||| |||||||||||||||||| ||||| |||||||||||    
T  46853594 ggagcttttgattctagaattgattttaacactcaaatttatt 46853552  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 40147939 - 40147886
Alignment:
Q  25 agaattgattttgcctccagctagaaattggagctgttgattctagaattgatt 78  Q
    |||||||||| | | || |||||||| |||||||| ||||||||||||||||||    
T  40147939 agaattgattctacttcaagctagaatttggagcttttgattctagaattgatt 40147886  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 47892459 - 47892418
Alignment:
Q  43 agctagaaattggagctgttgattctagaattgattataaca 84  Q
    |||||||||||| |||| |||||||||||||||||| |||||    
T  47892459 agctagaaattgaagcttttgattctagaattgattttaaca 47892418  T

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