View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5512-Insertion-8 (Length: 280)

Name: NF5512-Insertion-8
Description: NF5512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5512-Insertion-8
NF5512-Insertion-8
[»] chr3 (2 HSPs)
chr3 (8-274)||(36082620-36082886)
chr3 (95-274)||(22931671-22931850)
[»] chr1 (1 HSPs)
chr1 (96-274)||(51866432-51866602)
[»] chr2 (1 HSPs)
chr2 (97-152)||(7468128-7468183)
[»] chr8 (3 HSPs)
chr8 (110-151)||(44912715-44912756)
chr8 (110-191)||(44913657-44913739)
chr8 (110-154)||(25479825-25479869)
[»] chr4 (2 HSPs)
chr4 (110-151)||(24412976-24413017)
chr4 (110-153)||(26905357-26905400)
[»] scaffold0019 (1 HSPs)
scaffold0019 (112-153)||(59573-59614)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 36082620 - 36082886
Alignment:
Q  8 gaatcttgctattcgtaatgttttggagcggaatgcaaacttgaatttgttagttttaattcaagnnnnnnnnnnnnnnnnnnatattaaaacatggtta 107  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||    
T  36082620 gaatcttgctatttgtaatgttttggagcggaatgcaaacttgaatttgttagttttaattcaagtttttatttttattttttatattaaaacatggtta 36082719  T
Q  108 gtagtttgttacaagttagttaggtgatctagctaagtttgttagtatgattagatttcttactaagcaacgaacgtgaataagtcttatataaagggaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36082720 gtagtttgttacaagttagttaggtgatctagctaagtttgttagtatgattagatttcttactaagcaacaaacgtgaataagtcttatataaagggaa 36082819  T
Q  208 tgttgtaactactttcataatccaatgaatacacatagcttacaacaataatctcttccttcttctc 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36082820 tgttgtaactactttcataatccaatgaatacacatagcttacaacaataatcccttccttcttctc 36082886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 274
Target Start/End: Complemental strand, 22931850 - 22931671
Alignment:
Q  95 taaaacatggttagtagtttgttacaagttagttaggtgatctagctaagtttgtt-agtatgattagatttcttactaagcaacgaacgtgaataagtc 193  Q
    ||||||||| ||||||||||||||||||| ||| ||||||| |||||||||||||| ||| || ||||||| ||||||||||||  ||  ||||||||||    
T  22931850 taaaacatgtttagtagtttgttacaagtgagtcaggtgatgtagctaagtttgttaagtttgtttagattgcttactaagcaagcaaattgaataagtc 22931751  T
Q  194 ttatataaagggaatgttgtaactactttcataatccaatg-aatacacatagcttacaacaa-taatctcttccttcttctc 274  Q
     |||||||  ||| ||||||||||| ||||| |||  |||| ||||||||||| ||||||||| |||||||||| ||||||||    
T  22931750 ctatataa--ggagtgttgtaactattttcacaat-taatgaaatacacatagtttacaacaattaatctcttctttcttctc 22931671  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 96 - 274
Target Start/End: Complemental strand, 51866602 - 51866432
Alignment:
Q  96 aaaacatggttagtagtttgttacaagttagttaggtgatctagctaagtttgttagtatgattagatttcttactaagcaacgaacgtgaataagtctt 195  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||||||||||        ||||||| |||||||| |||  || ||||||||||| |    
T  51866602 aaaacatgtttagtagtttgttacaagttagttagatgatctagctaagtttgt--------ttagattacttactaaacaagcaaagtgaataagtcct 51866511  T
Q  196 atataaagggaatgttgtaactactttcataatccaatg-aatacacatagcttacaacaa-taatctcttccttcttctc 274  Q
    ||||||  || |||||||||||| ||||| |||| |||| || | |||||| ||||||||| || ||||||| ||||||||    
T  51866510 atataa--ggcatgttgtaactattttcacaatctaatgaaaaagacatagtttacaacaattattctcttcattcttctc 51866432  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 7468183 - 7468128
Alignment:
Q  97 aaacatggttagtagtttgttacaagttagttaggtgatctagctaagtttgttag 152  Q
    ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||    
T  7468183 aaacatgtttagtagtttgttacaagttagttagatgacctagctaagtttgttag 7468128  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 44912756 - 44912715
Alignment:
Q  110 agtttgttacaagttagttaggtgatctagctaagtttgtta 151  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  44912756 agtttgttacaagttagttaggtaatctagctaagtttgtta 44912715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 44913739 - 44913657
Alignment:
Q  110 agtttgttacaagttagttaggtgatctagctaagtttgtta-gtatgattagatttcttactaagcaacgaacgtgaataag 191  Q
    ||||||||||||||||||||||| |||||||||  ||||||| || || ||||||  ||||||||||||  || |||||||||    
T  44913739 agtttgttacaagttagttaggtaatctagctatatttgttatgtttgtttagatagcttactaagcaagcaatgtgaataag 44913657  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 25479825 - 25479869
Alignment:
Q  110 agtttgttacaagttagttaggtgatctagctaagtttgttagta 154  Q
    ||||||||| ||||||||||||  |||||||||||||| ||||||    
T  25479825 agtttgttaaaagttagttaggaaatctagctaagttttttagta 25479869  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 24413017 - 24412976
Alignment:
Q  110 agtttgttacaagttagttaggtgatctagctaagtttgtta 151  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  24413017 agtttgttacaagttagttaggtaatctagctaagtttgtta 24412976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 26905357 - 26905400
Alignment:
Q  110 agtttgttacaagttagttaggtgatctagctaagtttgttagt 153  Q
    |||||||||||||||||||||   ||||||||||||||||||||    
T  26905357 agtttgttacaagttagttagaaaatctagctaagtttgttagt 26905400  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Complemental strand, 59614 - 59573
Alignment:
Q  112 tttgttacaagttagttaggtgatctagctaagtttgttagt 153  Q
    ||||||||||||||||||||  |||| |||||||||||||||    
T  59614 tttgttacaagttagttaggaaatcttgctaagtttgttagt 59573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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