View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5512-Insertion-9 (Length: 272)
Name: NF5512-Insertion-9
Description: NF5512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5512-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 42433473 - 42433686
Alignment:
| Q |
8 |
gaacaaagcagcaggtataataggctctttcgagcttaacaatccgataacagccacattgactgagatggataagaggt-agaaccaaaggggag---- |
102 |
Q |
| |
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||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| |||| || || |||| |
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| T |
42433473 |
gaacaaagcagcaggtataatag-ctctttcgaacttaacagtccgataacagccacattgactaagatggataagaggtcagaatcagagaggagagga |
42433571 |
T |
|
| Q |
103 |
-gtaaccttgaagacttgaggcctgcaaatctcaacagacctgaaacttcagggagtcaaacacacatgaacaccaactcaaccgattgcaaagaaccct |
201 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
42433572 |
ggtaaccttgaagacttgaggcctgcagatctcaacagacctgaaacttcagggagtcaaacacacaagaacaccaactcaaccgattgcaaagaatcct |
42433671 |
T |
|
| Q |
202 |
aacaaccctttcggg |
216 |
Q |
| |
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||||||||||||||| |
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| T |
42433672 |
aacaaccctttcggg |
42433686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 557611 - 557386
Alignment:
| Q |
8 |
gaacaaagcagcaggtataataggctctttcgagcttaacaatccgataacagccacattgactgagatggataagaggtagaaccaaaggggaggtaac |
107 |
Q |
| |
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||||||| || |||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||||||||| |||| ||| || ||| ||||| |
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| T |
557611 |
gaacaaaacatcaggtataatag-ctctttcgagcttaacagttcgataacaatcacattgactgagatggataacaggt--aactggagaggacgtaac |
557515 |
T |
|
| Q |
108 |
cttgaagacttgaggcctgcaaatctcaacagacctgaaacttcagggagtcaaacacacatgaacaccaactcaaccgattgcaaagaaccctaacaac |
207 |
Q |
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| T |
557514 |
cctgaagacttgaagcctgcagatctcaacagacctggaacatcagagag-caa--gcacaagagtacaaaatcaaccgattgcaaagaacccgaacaac |
557418 |
T |
|
| Q |
208 |
cctttcgggattaaaagaaccacaccctttcgg |
240 |
Q |
| |
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||||||| | |||||||||||| |||||||||| |
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| T |
557417 |
cctttcgag-ttaaaagaaccaaaccctttcgg |
557386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 9192482 - 9192530
Alignment:
| Q |
116 |
cttgaggcctgcaaatctcaacagacctgaaacttcagggagtcaaaca |
164 |
Q |
| |
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|||||| |||||||||||||||||||||| ||| |||| || ||||||| |
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|
| T |
9192482 |
cttgagacctgcaaatctcaacagacctggaacatcagagaatcaaaca |
9192530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 17303563 - 17303340
Alignment:
| Q |
8 |
gaacaaagcagcaggtataataggctctttcgagcttaacaatccgataacagccacattgactgagatggataagaggt-agaaccaaaggggaggtaa |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||| ||||||| || | |||||| |
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|
| T |
17303563 |
gaacaaagcagcaggtataatag-ctctttcgagcttaacagtccgataacagtcacaatgactgagatggataagaggtcagaaccagagagaaggtaa |
17303465 |
T |
|
| Q |
107 |
ccttgaagacttgaggcctgcaaatctcaacagacctgaaacttcagggagtcaaacacacatgaacaccaactcaaccgattgcaaagaaccctaacaa |
206 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| ||||||| || |||| |||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
17303464 |
ccttgaagacttgaagcctgcagatctcaacagacctggaacttca-ggtttcaagcacacatgaacatcaactcaaccgattgcaaagaaccctaacaa |
17303366 |
T |
|
| Q |
207 |
ccctttcgggattaaaagaaccacacc |
233 |
Q |
| |
|
| |||| ||| ||||||| |||||||| |
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|
| T |
17303365 |
ctcttttggg-ttaaaaggaccacacc |
17303340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 33050884 - 33050961
Alignment:
| Q |
8 |
gaacaaagcagcaggtataataggctctttcgagcttaacaatccgataacagccacattgactgagatggataagagg |
86 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | ||||||| |||||||||| |||| |||||||||| ||| ||||| |
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|
| T |
33050884 |
gaacaaagcagcaggtataata-gccctttcaaacttaacagtccgataacaatcacaatgactgagatcgattagagg |
33050961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 22065825 - 22065597
Alignment:
| Q |
9 |
aacaaagcagcaggtataataggctctttcgagcttaacaatccgataacagccacattgactgagatggataagaggt-agaaccaaaggggaggtaac |
107 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| |||||||||| ||||||||| ||||||||||| |||| ||||| || ||| |||| |
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|
| T |
22065825 |
aacaaagcagcaggtataatagttt-tttcgagcttaacagtccgataacaatcacattgaccgagatggataacaggtcagaactggagaggacgtaat |
22065727 |
T |
|
| Q |
108 |
cttgaagacttgaggcctgcaaatctcaacagacctgaaacttcagggagtcaaacacacatgaacaccaactcaaccgattgcaaagaaccctaacaac |
207 |
Q |
| |
|
| ||||||||||| ||||||| ||||||||||||||| ||| |||| ||||||| |||| || ||| || ||||| ||||||||||||||| |||||| |
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|
| T |
22065726 |
cctgaagacttgaagcctgcagatctcaacagacctggaacatcagagagtcaa--gcacaagagcacaaaatcaacggattgcaaagaacccaaacaac |
22065629 |
T |
|
| Q |
208 |
cctttcgggattaaaagaaccacaccctttcgg |
240 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| |
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| T |
22065628 |
cctttcggg-ttaaaagaaccaaaccctttcgg |
22065597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 47810543 - 47810754
Alignment:
| Q |
13 |
aagcagcaggtataataggctctttcgagcttaacaatccgataacagccacattgactgagatggataagaggtagaaccaaaggggaggtaaccttga |
112 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||| ||||||| |||| |||||||||||||| |||| || ||| ||| |||||||| ||| |
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|
| T |
47810543 |
aagcagcaggtataataa-ctctttcgagcttaacagtccaataacagtcacaatgactgagatggattagagacagtaccgaaga--aggtaaccctga |
47810639 |
T |
|
| Q |
113 |
agacttgaggcctgcaaatctcaacagacctgaaacttcagggagtcaaacacacatgaacaccaactcaaccgattgcaaagaaccctaacaacccttt |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| | | ||||||| ||||||| |||||| |||||||||| |||||||||| ||||||||||| |
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|
| T |
47810640 |
agacttgaggcctgcagatctcaacagacctggaacat--gagagtcaa--gcacatgagcaccaattcaaccgatttcaaagaacccaaacaacccttt |
47810735 |
T |
|
| Q |
213 |
cgggattaaaagaaccacac |
232 |
Q |
| |
|
|||| ||||||||||||||| |
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|
| T |
47810736 |
cggg-ttaaaagaaccacac |
47810754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 31750262 - 31750137
Alignment:
| Q |
12 |
aaagcagcaggtataataggctctttcgagcttaacaatccgataacagccacattgactgagatggataa-gaggtagaaccaaaggggaggtaacctt |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| ||||||| || ||| |||||||||||||| || || | | || |||||| ||| | |
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|
| T |
31750262 |
aaagcagcaggtataatag-ctctttcgagc---acaatccaataacagacatatttactgagatggataataagacagtatcggagaggaggtgaccct |
31750167 |
T |
|
| Q |
111 |
gaagacttgaggcctgcaaatctcaacaga |
140 |
Q |
| |
|
||||||||||| |||||| ||||||||||| |
|
|
| T |
31750166 |
gaagacttgagacctgcagatctcaacaga |
31750137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 3925483 - 3925438
Alignment:
| Q |
99 |
ggaggtaaccttgaagacttgaggcctgcaaatctcaacagacctg |
144 |
Q |
| |
|
|||||| ||| |||||||||||| |||||| ||||||||||||||| |
|
|
| T |
3925483 |
ggaggtgaccctgaagacttgagacctgcagatctcaacagacctg |
3925438 |
T |
|
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