View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5512_high_4 (Length: 319)

Name: NF5512_high_4
Description: NF5512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5512_high_4
NF5512_high_4
[»] chr3 (8 HSPs)
chr3 (18-284)||(42433209-42433477)
chr3 (132-226)||(557723-557817)
chr3 (132-283)||(47721030-47721182)
chr3 (24-74)||(557614-557664)
chr3 (25-72)||(8819373-8819420)
chr3 (26-72)||(26373389-26373435)
chr3 (24-72)||(30499011-30499059)
chr3 (24-72)||(47720917-47720965)
[»] chr2 (4 HSPs)
chr2 (24-285)||(17303566-17303831)
chr2 (128-254)||(33050647-33050773)
chr2 (18-75)||(44742215-44742273)
chr2 (31-72)||(33050833-33050874)
[»] chr4 (5 HSPs)
chr4 (128-285)||(22065939-22066098)
chr4 (24-72)||(20626624-20626672)
chr4 (24-72)||(22065829-22065877)
chr4 (29-72)||(23096509-23096552)
chr4 (26-86)||(50300487-50300547)
[»] chr1 (3 HSPs)
chr1 (18-72)||(43031359-43031413)
chr1 (128-282)||(43031148-43031302)
chr1 (24-72)||(23043551-23043599)
[»] scaffold0445 (1 HSPs)
scaffold0445 (24-72)||(10431-10479)
[»] scaffold0042 (1 HSPs)
scaffold0042 (18-72)||(31163-31218)
[»] chr7 (1 HSPs)
chr7 (24-63)||(43574029-43574068)
[»] chr5 (2 HSPs)
chr5 (24-72)||(35078051-35078099)
chr5 (23-63)||(18012898-18012938)
[»] chr6 (1 HSPs)
chr6 (24-72)||(31750270-31750317)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 42433477 - 42433209
Alignment:
Q  18 tgttcaggggttgctggtacgtggatctcgataccgtgttggcggtggatccatttgctaattataaaccnnnnnnnaattctatggatgttcacacttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||       |||||||||||||||||| ||||    
T  42433477 tgttcaggggttgctggtacgtggatctcgataccgtgttggcggtggatccattcgtcaattataaacctttttttaattctatggatgttcactcttc 42433378  T
Q  118 atannnnnnn--aatctggtttcgtgctcgtacgcgagcatgcttggttctgttcgtggggagtgatctttctgttaggattatttaaggcagggctacc 215  Q
    |||         |||||||||||||||||||||| ||||||||| ||||  ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42433377 atatttttttgtaatctggtttcgtgctcgtacgtgagcatgctgggttgcgttcgtgaggagtgatctttctgttaggattatttaaggcagggctacc 42433278  T
Q  216 tgggttgtattgtattgtgttattctcttttgagttgtagctgggtcaggcctaatacccccagtctct 284  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  42433277 tgggttgtattgtattgtgttattcccttttgggttgtagctgggtcaggcctaatacccccagtctct 42433209  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 557723 - 557817
Alignment:
Q  132 tggtttcgtgctcgtacgcgagcatgcttggttctgttcgtggggagtgatctttctgttaggattatttaaggcagggctacctgggttgtatt 226  Q
    |||||||||||||||||||| ||||||| ||||  ||||||| |||||  ||||||||||||||||||||| || ||||||||||||||||||||    
T  557723 tggtttcgtgctcgtacgcgggcatgctgggttgcgttcgtgaggagttctctttctgttaggattatttagggtagggctacctgggttgtatt 557817  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 132 - 283
Target Start/End: Original strand, 47721030 - 47721182
Alignment:
Q  132 tggtttcgtgctcgtacgcgagcatgcttggttctgttcgtggggagtgatctttctgttaggattatttaaggcagggctacctgggttgtattgtatt 231  Q
    |||||||||||||||||||  ||| | | | ||  ||||||| |||||| ||||| ||||| ||||||||| || ||||||||| |||||||||| ||||    
T  47721030 tggtttcgtgctcgtacgcaggcacgttggattgcgttcgtgaggagtgctctttttgttatgattatttagggtagggctaccggggttgtattatatt 47721129  T
Q  232 gtgttattctcttttgagttgtagctgggtcaggcctaat-acccccagtctc 283  Q
    || |||||| | |||| |||||| ||||||||||||||||  |||||||||||    
T  47721130 gtattattcccatttgggttgtacctgggtcaggcctaatgtcccccagtctc 47721182  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 557614 - 557664
Alignment:
Q  24 ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatttg 74  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  557614 ggggttgttggtacgtggatcttgataccgtgttggcggtcgatccatttg 557664  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 8819420 - 8819373
Alignment:
Q  25 gggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 72  Q
    ||||||||||||||||||||| || ||||| |||||||||||||||||    
T  8819420 gggttgctggtacgtggatcttgaaaccgtattggcggtggatccatt 8819373  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 26373435 - 26373389
Alignment:
Q  26 ggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 72  Q
    |||||||||||||||||||| |||||||||||| |||| ||||||||    
T  26373435 ggttgctggtacgtggatcttgataccgtgttgacggtcgatccatt 26373389  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 30499059 - 30499011
Alignment:
Q  24 ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 72  Q
    |||||||||||||| ||||||| || |||||||||||||| ||||||||    
T  30499059 ggggttgctggtacttggatcttgaaaccgtgttggcggtcgatccatt 30499011  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 47720917 - 47720965
Alignment:
Q  24 ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 72  Q
    ||||||| |||||||||||||| |||||| |||||||||| ||||||||    
T  47720917 ggggttgttggtacgtggatcttgataccttgttggcggtcgatccatt 47720965  T

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Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 24 - 285
Target Start/End: Original strand, 17303566 - 17303831
Alignment:
Q  24 ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatttgctaattataaaccnnnnnnnaattctatggatgttcacacttcatannn 123  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||| ||| || |||||||||||       |||||||||||||||||| |||||||       
T  17303566 ggggttgttggtacgtggatctcgatatcgtgttggcggtggatctattcgccaattataaacctttttttaattctatggatgttcactcttcatattt 17303665  T
Q  124 nnnn---aatctggtttcgtgctcgtacgcgagcatgcttggttctgttcgtggggagtgatctttctgttaggattatttaaggcagggctacctgggt 220  Q
           ||| | ||||||||||||| |||||| ||||| ||||  ||||||| |||||||||||||||||||||||||||||||  || ||||||||||    
T  17303666 tttttgtaatatagtttcgtgctcgtgcgcgagtatgctgggttgcgttcgtgaggagtgatctttctgttaggattatttaaggttggactacctgggt 17303765  T
Q  221 tgtattgtattgtgttattctcttttgagttgtagctgggtcaggcctaat-acccccagtctctg 285  Q
    ||||||| ||||||||||||  |||||  ||||| ||||||||||||||||  |||||||||||||    
T  17303766 tgtattgcattgtgttattcatttttggattgtacctgggtcaggcctaatgccccccagtctctg 17303831  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 254
Target Start/End: Complemental strand, 33050773 - 33050647
Alignment:
Q  128 aatctggtttcgtgctcgtacgcgagcatgcttggttctgttcgtggggagtgatctttctgttaggattatttaaggcagggctacctgggttgtattg 227  Q
    |||||| ||||||||||||||||| ||||||| ||||  |||||||  ||| | ||||||| ||| ||||| ||| || ||||||| || | || |||||    
T  33050773 aatctgatttcgtgctcgtacgcgggcatgctgggttgcgttcgtgatgagggttctttctattaagattaattagggtagggctaactagtttatattg 33050674  T
Q  228 tattgtgttattctcttttgagttgta 254  Q
    |||||| |||||||| |||| ||||||    
T  33050673 tattgtattattctcatttgggttgta 33050647  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 44742215 - 44742273
Alignment:
Q  18 tgttcagg-ggttgctggtacgtggatctcgataccgtgttggcggtggatccatttgc 75  Q
    |||||||| |||||||||||||||||||| ||||| ||||||||| | |||| ||||||    
T  44742215 tgttcaggaggttgctggtacgtggatcttgatactgtgttggcgattgatctatttgc 44742273  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 33050874 - 33050833
Alignment:
Q  31 ctggtacgtggatctcgataccgtgttggcggtggatccatt 72  Q
    ||||||||||||| | ||||||||||||||||| ||||||||    
T  33050874 ctggtacgtggatttggataccgtgttggcggtcgatccatt 33050833  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 128 - 285
Target Start/End: Original strand, 22065939 - 22066098
Alignment:
Q  128 aatctggtttcgtgctcgtacgcgagcatgcttggttctgttcgtggggagtgatctttctgttaggattatttaaggcagggctacctgggttgtattg 227  Q
    |||||||||||||| ||||||||| ||| ||| ||||  ||||||| |||||| ||||||||||||||||||||| || ||||||||||||||||||||     
T  22065939 aatctggtttcgtgttcgtacgcgggcacgctgggttgcgttcgtgaggagtgctctttctgttaggattatttagggaagggctacctgggttgtatta 22066038  T
Q  228 tattgtgttattctcttttgagttgtagctgggtcaggcctaa--tacccccagtctctg 285  Q
    |||||| |||||| | |||   ||||| |||| ||||||||||  | |||||||||||||    
T  22066039 tattgtattattcccatttagattgtacctggatcaggcctaatgtccccccagtctctg 22066098  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 20626672 - 20626624
Alignment:
Q  24 ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 72  Q
    ||||||||| |||||||||||| ||||||||||||||||| ||||||||    
T  20626672 ggggttgctagtacgtggatcttgataccgtgttggcggttgatccatt 20626624  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 22065829 - 22065877
Alignment:
Q  24 ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 72  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||    
T  22065829 ggggttgttggtacgtggatcttgataccgtgttggcggtcgatccatt 22065877  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 23096552 - 23096509
Alignment:
Q  29 tgctggtacgtggatctcgataccgtgttggcggtggatccatt 72  Q
    ||||||||||||||| | ||||||||||||||||| ||||||||    
T  23096552 tgctggtacgtggattttgataccgtgttggcggtcgatccatt 23096509  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 50300547 - 50300487
Alignment:
Q  26 ggttgctggtacgtggatctcgataccgtgttggcggtggatccatttgctaattataaac 86  Q
    |||||||| || |||||||| ||||||||||||| ||| |||||||| || |||| |||||    
T  50300547 ggttgctgatatgtggatcttgataccgtgttggtggtcgatccattcgccaattctaaac 50300487  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 43031413 - 43031359
Alignment:
Q  18 tgttcaggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 72  Q
    |||||| ||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  43031413 tgttcatgggttgctggtacgtggatctggttaccgtgttggcggtagatccatt 43031359  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 282
Target Start/End: Complemental strand, 43031302 - 43031148
Alignment:
Q  128 aatctggtttcgtgctcgtacgcgagcatgcttggttctgttcgtggggagtgatctttctgttaggattatttaaggcagggctacctgggttgtattg 227  Q
    ||||| |||||||||| |||||||  |||| |  |||  ||||||| | |||| ||||| |||||| |||| ||| || ||| |||||||| ||||||||    
T  43031302 aatctagtttcgtgcttgtacgcggacatgttgagttgcgttcgtgagaagtgctctttttgttagaattaattagggtaggcctacctggattgtattg 43031203  T
Q  228 tattgtgttattctcttttgagttgtagctgggtcaggcctaatacccccagtct 282  Q
    | || | |||||| |||||| || |||  |||||| || || |||||||||||||    
T  43031202 ttttattttattcccttttgggtggtatttgggtccggtcttatacccccagtct 43031148  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 23043551 - 23043599
Alignment:
Q  24 ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 72  Q
    |||||||||||||||||||| | ||||||||||||| ||| ||||||||    
T  23043551 ggggttgctggtacgtggatattgataccgtgttggtggtcgatccatt 23043599  T

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Target: scaffold0445 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 10431 - 10479
Alignment:
Q  24 ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 72  Q
    |||||||||||||||||||||| || || ||||||||||||||||||||    
T  10431 ggggttgctggtacgtggatcttgaaactgtgttggcggtggatccatt 10479  T

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Target: scaffold0042 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 31163 - 31218
Alignment:
Q  18 tgttcagg-ggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 72  Q
    |||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||    
T  31163 tgttcaggaggttgctggtacgtggatcttgataccgtgttgacggtcgatccatt 31218  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 43574068 - 43574029
Alignment:
Q  24 ggggttgctggtacgtggatctcgataccgtgttggcggt 63  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  43574068 ggggttgctggtacgtggatcttgataccgtgttggcggt 43574029  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 35078099 - 35078051
Alignment:
Q  24 ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 72  Q
    |||||| ||||||||||||||| || |||||||||||||| ||||||||    
T  35078099 ggggtttctggtacgtggatcttgaaaccgtgttggcggtcgatccatt 35078051  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 18012898 - 18012938
Alignment:
Q  23 aggggttgctggtacgtggatctcgataccgtgttggcggt 63  Q
    |||||||| |||||||||||||| |||||||| ||||||||    
T  18012898 aggggttgttggtacgtggatcttgataccgtattggcggt 18012938  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 31750270 - 31750317
Alignment:
Q  24 ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 72  Q
    |||||||||||||||||||| | | ||||||||||||||| ||||||||    
T  31750270 ggggttgctggtacgtggat-ttgttaccgtgttggcggtcgatccatt 31750317  T

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